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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061961 ID=TCONS_00061961|Name=TCONS_00061961|organism=Clytia hemisphaerica|type=transcript|length=4729bpRun BLAST on NCBI protein sequence of TCONS_00061961-protein >TCONS_00061961-protein ID=TCONS_00061961-protein|Name=TCONS_00061961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1159bp MSSTLLAKRSISPESVSVNGTALPPHYHPRDEFSDNELSGAKSTVDIEQMRun BLAST on NCBI transcript from alignment at scaffold_361:1739149..1767858+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061961 ID=TCONS_00061961|Name=TCONS_00061961|organism=Clytia hemisphaerica|type=transcript|length=28710bp|location=Sequence derived from alignment at scaffold_361:1739149..1767858+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:1739149..1767858+ >TCONS_00061961 ID=TCONS_00061961|Name=TCONS_00061961|organism=Clytia hemisphaerica|type=CDS|length=76560bp|location=Sequence derived from alignment at scaffold_361:1739149..1767858+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061961 vs. Swiss-Prot (Human)
Match: ADCY5 (Adenylate cyclase type 5 OS=Homo sapiens GN=ADCY5 PE=1 SV=3) HSP 1 Score: 794.267 bits (2050), Expect = 0.000e+0 Identity = 462/1087 (42.50%), Postives = 672/1087 (61.82%), Query Frame = 1
Query: 505 ISLFKTIPFPSPKIEELYRRYFFHLNQHFINWFLVILIVTCICEIGLHFHFNRTGSFRYTRGIFLVVQVTVFAALLSIINWNGSSGRLLVLVSYIIVFFNCLMTIFNSVPLEGDI----HGVTKSMNFVIFAIYMTYVMLPLQFRMSICCGMLITTTHLITSVASQASTQKDVWWLIATNILIYIAVNLAGIFSHYPAEQAQREAFLETRGFVETRLKLQRENQEQERLLLSVLPRHVAMEMKADIEGELEESMFSKIYIQRHANVSILFADIEGFTQLASQCTAHELVKTLNELFARFDQLAVKNHCMRIKILGDCYYCVSGLPEPRPDHAHCCINMGLDVIEAIGIVREAVGVKLNMRVGIHTGKVHCGVLGLKKWQYDVWSNDVTIASHMESGGKPGLIHVTEAVCEEIKEEYSIEDGEGYKRDVYLKEHNIKSFFIVPSADKQKERQ---LSRNTKRSTTVANQYNVTPQGTQQAPNNGSARPEGVPNGVNNQNSQPFAKRFFEGVEEDDGSQELKEKKMRERLGLTMTTMSSEDEVNEFLERAIDARNVEHLKEENVRPVILKFRKQEYENKYCEEVDSLFIPHMMXXXXXXXXXXXXXXXXXPRTTKXXXXXXXXXXXXXPTILFSIFHKMEKI----SRLFSPKIVK---NQSLYRVLSITVIFL-----LYISATGTLFICPEQPPSIHSCIYNSSTTTPVELHRDAIPGLADEY---------CVYPQYITYIISLAMITAANSLNCLSTSKFLIILAVALFYSIAIPLKFKPLYDWHDSLAHC-----LSEGMSN--QQFVPLYIHSISSVI--YLFVGLVSHTYMHENISRLDFLWKAQATQERDEMNDKRKYNKKLLYNILPVHVAEHFL--KDNNEDLYAQACSSVAVLFSNICNFSEFYMELEATGDGMECLRVLNQIIVDFDNILQDPKFKTIEKIKTIGETYMAASGLNLQSAEELQNCDHVEELAAFAMKMDDTLDEMNKNAFNNFKLKSGLSFGPVVAGVIGAKKPQYDIWGDTVNVASRMYSTGKPNCIQVTQSVYNLLSKRGFTFECRGLVAVKGKGKMVTYWLLKG 3648
+ +F++ FPS K+E LY+RYFF LNQ + +++ ++ +C + L FH R + L V V + + N + L Y L+ + +V + G + ++ + + +F IY Y +LP++ R ++ G+L++ HL ++ + A Q + L+ +N+LI+ N+ G+ +HYPAE +QR+AF ETR ++ RL QRENQ+QERLLLSVLPRHVAMEMKADI + E+ MF KIYIQ+H NVSILFADIEGFT LASQCTA ELV TLNELFARFD+LA +NHC+RIKILGDCYYCVSGLPE R DHAHCC+ MG+D+IEAI +VRE GV +NMRVGIH+G+VHCGVLGL+KWQ+DVWSNDVT+A+HME+GGK G IH+T+A + +Y +E G G +R+ YLKEH+I++F I+ K+KE + N +R+ ++ + P+ G+ RP G NQ S+ + FE +D +QE + + EDEV+EFL RAIDAR+++ L+ E+VR +L FR+ + E KY ++VD F ++ +VFLFI + + + P + L + + LL + S+ + K+ + S KIV+ N +L V +IT++FL ++ + L C Q +I + N+ ++ L DE C +P+Y TY + L+++ + L K +++LA+ L Y + + + L+D D L + G S + + + ++ +I + L H E+ +RLDFLWK QAT+E++EM + + YN++LL+NILP VA HFL + N++LY Q+C VAV+F++I NFSEFY+ELEA +G+ECLR+LN+II DFD I+ + +F+ +EKIKTIG TYMAASGLN + +++ H++ LA FAMK+ D + +N+++FNNF++K GL+ GPVVAGVIGA+KPQYDIWG+TVNVASRM STG P+ IQVT +Y +L+ + ECRG+V VKGKG+M+TY+L G
Sbjct: 213 LQIFRSKKFPSDKLERLYQRYFFRLNQSSLT--MLMAVLVLVCLVMLAFHAARP-PLQLPYLAVLAAAVGVILIMAVLCNRAAFHQDHMGLACY------ALIAVVLAVQVVGLLLPQPRSASEGIWWTVFFIYTIYTLLPVRMRAAVLSGVLLSALHLAIALRTNAQDQFLLKQLV-SNVLIFSCTNIVGVCTHYPAEVSQRQAFQETRECIQARLHSQRENQQQERLLLSVLPRHVAMEMKADINAKQEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREVTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLNYLNGDYEVEPGCGGERNAYLKEHSIETFLILRCTQKRKEEKAMIAKMNRQRTNSIGH----------NPPHWGAERPFYNHLG-GNQVSKEMKRMGFED-PKDKNAQE---------------SANPEDEVDEFLGRAIDARSIDRLRSEHVRKFLLTFREPDLEKKYSKQVDDRFGAYVACASLVFLFICFVQITIVPHSIFMLSFYLTCSLLLTLVVFVSVIYSCVKLFPSPLQTLSRKIVRSKMNSTLVGVFTITLVFLAAFVNMFTCNSRDLLGCLAQEHNISASQVNACHVAESAVNYS----LGDEQGFCGSPWPNCNFPEYFTYSVLLSLLACSVFLQISCIGKLVLMLAIELIYVLIVEVPGVTLFDNADLLVTANAIDFFNNGTSQCPEHATKVALKVVTPIIISVFVLALYLHAQQVESTARLDFLWKLQATEEKEEMEELQAYNRRLLHNILPKDVAAHFLARERRNDELYYQSCECVAVMFASIANFSEFYVELEANNEGVECLRLLNEIIADFDEIISEDRFRQLEKIKTIGSTYMAASGLNDSTYDKVGK-THIKALADFAMKLMDQMKYINEHSFNNFQMKIGLNIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPDRIQVTTDMYQVLAANTYQLECRGVVKVKGKGEMMTYFLNGG 1257 The following BLAST results are available for this feature:
BLAST of TCONS_00061961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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