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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061967 ID=TCONS_00061967|Name=TCONS_00061967|organism=Clytia hemisphaerica|type=transcript|length=2520bpRun BLAST on NCBI protein sequence of TCONS_00061967-protein >TCONS_00061967-protein ID=TCONS_00061967-protein|Name=TCONS_00061967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp MDKSIEHGGGRKKSFGRGFDFMMYNVDDIPPWYYTILLSLQHYMTMVGSTRun BLAST on NCBI transcript from alignment at scaffold_361:103757..112372- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061967 ID=TCONS_00061967|Name=TCONS_00061967|organism=Clytia hemisphaerica|type=transcript|length=8616bp|location=Sequence derived from alignment at scaffold_361:103757..112372- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:103757..112372- >TCONS_00061967 ID=TCONS_00061967|Name=TCONS_00061967|organism=Clytia hemisphaerica|type=CDS|length=18960bp|location=Sequence derived from alignment at scaffold_361:103757..112372- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061967 vs. Swiss-Prot (Human)
Match: S23A1 (Solute carrier family 23 member 1 OS=Homo sapiens GN=SLC23A1 PE=1 SV=3) HSP 1 Score: 418.313 bits (1074), Expect = 6.258e-135 Identity = 216/435 (49.66%), Postives = 292/435 (67.13%), Query Frame = 2
Query: 782 QHDWRVGMREIQGSIMLASLFQVVIGMTGIIGFLMRFIGPLTIAPTVSLVGIALFESTGDFAGKQWGIAALTVLCVILFSQVLGH-----------------RFSFFNLFPVILAIFTAWGVSAIITIAGGFPEDSPA-----RTDKRISVVYEAEWIRVPYPGQWGMPTAHVAGVFGMIAGVFASMIESIGDYYACARIAGVPPPPKHSVNRGILCEGLCCILAGAFGSGNGTTSYSENIAAMGITRVASRRVVQVSGVIMILLSILGKFGAIFTLIPDPVIGGMLWSLFGFIIAVGLSNLQFVNLNSSRNLFVLGFALFNGMVVPTWIVKNQEAINTGIEEIDQVLFVLLKTNMAVGGLTAAIFDNLLPGSKEDRGLYAWKSMQGFD---GSACRTYDLPYIQGFLDRHSWVKYIPFLPHNKQRKISRSSELQ 2011
H W +RE+QG+IM++S+ +VVIG+ G+ G L+ +IGPLT+ PTVSL+G+++F++ GD AG WGI+A ++L +ILFSQ L + R F +FP++LAI T W + ++T+ P D A RTD R ++ A WIR+PYP QWG+PT A V GM + A +IESIGDYYACAR+AG PPPP H++NRGI EG+CCI+AG G+GNG+TS S NI +GIT+V SRRVVQ IM++L +GKF A+F+ +PDP++GGM +LFG I AVGLSNLQFV++NSSRNLFVLGF++F G+ +P ++ N AINTGI E+DQ+L VLL T M VGG A I DN +PGS E+RGL WK+ + S+ ++YD P G + R +++KYIP P K S SS+ Q
Sbjct: 146 SHIWHPRIREVQGAIMVSSVVEVVIGLLGLPGALLNYIGPLTVTPTVSLIGLSVFQAAGDRAGSHWGISACSILLIILFSQYLRNLTFLLPVYRWGKGLTLLRIQIFKMFPIMLAIMTVWLLCYVLTLTDVLPTDPKAYGFQARTDARGDIMAIAPWIRIPYPCQWGLPTVTAAAVLGMFSATLAGIIESIGDYYACARLAGAPPPPVHAINRGIFTEGICCIIAGLLGTGNGSTSSSPNIGVLGITKVGSRRVVQYGAAIMLVLGTIGKFTALFSSLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLESNPGAINTGILEVDQILIVLLTTEMFVGGCLAFILDNTVPGSPEERGLIQWKAGAHANSDMSSSLKSYDFPIGMGIVKRITFLKYIPICPVFK--GFSSSSKDQ 578 HSP 2 Score: 107.842 bits (268), Expect = 4.075e-24 Identity = 51/118 (43.22%), Postives = 75/118 (63.56%), Query Frame = 2
Query: 215 MMYNVDDIPPWYYTILLSLQHYMTMVGSTLVIPILLAGPLCIGDNPLALSEIISTVFLISGIATIVQSCVGTRLPIVQGATVAFLGPTISILNLPKYKCNNPSIVSVLSNSTGPLNTT 568
M+Y ++D+PPWY ILL QHY+T T+ +P LLA LC+G + +S++I T+F GI T++Q+ VG RLP+ Q + AFL P +IL L ++KC P + N + PLNT+
Sbjct: 31 MLYKIEDVPPWYLCILLGFQHYLTCFSGTIAVPFLLAEALCVGHDQHMVSQLIGTIFTCVGITTLIQTTVGIRLPLFQASAFAFLVPAKAILALERWKC--PPEEEIYGNWSLPLNTS 146 The following BLAST results are available for this feature:
BLAST of TCONS_00061967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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