|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061995 ID=TCONS_00061995|Name=TCONS_00061995|organism=Clytia hemisphaerica|type=transcript|length=2038bp
ATATAGACAACAACGctgaaaaaatgtttgaaaaattgaatattattttt
ccAGTGAGTTATCTGGCTATCATTTTCTCAAGTATTGCAACACTTTATTG
CTACCAATCTTCACGCGTTATTCATAAGCCAGAGGGAACAAAAATCTCAG
TCAATATCAGTTACATTCGTGTTAAATATATGACAGGTCATCGAATGGTC
GACCCCCCAATAAAGGCTTTAACAACAAACGATAAGGAAGGCTGCGTGAA
AGAGTGCTTATTAACAAGTGGAAAATGCCAGAGTATGAATCTCAAATTAA
CTTTGAGTGGATTTGATTGTGAAATTTTACAAACAGATATTTATACCTCA
AATAATCTGACCGCAGATGTAGGGTCTATCCATGTCGTTATTGTTaatgg
tTGTAGTAAAGATCCTTGTCAAAGAGAGGAGAATTGTGTACCAAACTACC
AGGATGACTCGTACGCATGCGTGAACATAAACGCACGAACGTGCAAAGAG
ATGAAAGATAGAAAGCCTTTAGCAACATCAGGATATTACAAGATCAATTT
GAACGGGAAAATGCGAGATGTTTACTGtgatatggacactgatcaTGGTG
GATGGATGATGTTGGCTAACTATACAAACAAATTTGCAAGCTCAACTGCA
ACTGAAATGACAATTGGTGACTTGGATTCATTTCTTCAGCTTCAAAATGG
AGATTTTCTATTGGATGGGGACACTATCTTCCGCAAATTCATTCTCAAAC
TCCAATCACAGAAATCAGGTTTTATTGTCACAAGCCAAACGTTGGAAGAA
CAATAAGCTTCGTCACAAACCATAATGCAGTTGGTGTTGAGCTAAAAGAA
TATATCTTAGGTCTCAATAATGGTGGGTTATGTAACCGTGCAATAGGTCG
AACCGAATCTGTCAGAACATTGGATGATGATACTAGCTTTCTATCACGTA
ATATTAACTGTTTTGGTGGAAGCAGCTGGTTCACACCAAATCAAAGACTT
TATGATCACCCAGTGTGGGCTGATTATTGGCCTAATGGTTTGAGCTCCAA
AGTTCATTTTGTTGTGTTGCCAAATCGTCTAGACTGTGATGATGGGACTC
AGGGTCAAGACACTAAAAAACCTGGCACTTTCAGAGTATACATACGATAA
TATGATATTGATCATCAAATTAGAGCATTCCCACAAAATCccaaaaatat
acaaacatTAGACATgagcttgaaaatgaaaagtttcatttAATCATAAA
CAATGAGATCTTTTCTTAGAGCAAGGATTTACGGTCAACTGATTTACAGT
ACCATACAAACTTATCaaacttaaaaactttacatataGAATGTTTTTAA
TAAACAATTTACAAGGAACTCACAGACAACATTTATGTATGTATACCGAA
TTCATCGTTCTACATTTGCAATTATGACTTTACTAAGCTAATTTGACATC
GATTGCCTAAAAGGTTGATAGTGAAACATGCTATAACGATAGCTTTAGAC
TAAATCTCCGATATCAACATTACAGGATTTACCGTGCGGCtagatttcac
tttcgtttttagttgtttcaatttttcaaatttcaaaccagCATCTTGGC
AATAGCATTTAAAGTTTTTGCTGACATCATATTGAAAACagcaataattt
caataatttttggaTGCTTTCGAACTTGCCTCAACCTACCTGACACTGGT
AATGAGTGCAGTGCCTTCTTTATTTCATGGAAGTAATTGTATTGAGTTTT
AATCAATCAATAAGAATAAAActgccatttttcaaaaaatgggaaaacaa
aagtgacacaAATCAATTAACAAAAGAGATATCGTATACTTTCTGTTGTG
TATGTATACGTATATTAGAATTATTCACATAAGCTGTCTAGAAAGgaaat
ttttctctgaaataataagaatacgttaagaatatttcaccctcaatttt
agcaatttcttaagaatacttcaCCCTCAGTCAAAGTACataattcttat
aagaaaaagcgtgtagtctTTTGTCCTGGCTGAGGGCA Run BLAST on NCBI protein sequence of TCONS_00061995-protein >TCONS_00061995-protein ID=TCONS_00061995-protein|Name=TCONS_00061995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
IDNNAEKMFEKLNIIFPVSYLAIIFSSIATLYCYQSSRVIHKPEGTKISV
NISYIRVKYMTGHRMVDPPIKALTTNDKEGCVKECLLTSGKCQSMNLKLT
LSGFDCEILQTDIYTSNNLTADVGSIHVVIVNGCSKDPCQREENCVPNYQ
DDSYACVNINARTCKEMKDRKPLATSGYYKINLNGKMRDVYCDMDTDHGG
WMMLANYTNKFASSTATEMTIGDLDSFLQLQNGDFLLDGDTIFRKFILKL
QSQKSGFIVTSQTLEEQ Run BLAST on NCBI transcript from alignment at scaffold_361:568463..572346- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061995 ID=TCONS_00061995|Name=TCONS_00061995|organism=Clytia hemisphaerica|type=transcript|length=3884bp|location=Sequence derived from alignment at scaffold_361:568463..572346- (Clytia hemisphaerica)
ATATAGACAACAACGCTGAAAAAATGTTTGAAAAATTGAATATTATTTTT
CCAGTGAGTTATCTGGCTATCATTTTCTCAAGTATTGCAACACTTTATTG
CTACCAATCTTCACGCGTTATTCATAAGCCAGAGGGAACAAAAATCTCAG
TCAATATCAGTTACATTCGTGTTAAATATATGACAGGTCATCGAATGGTC
GACCCCCCAATAAAGGCTTTAACAACAAACGATAAGGAAGGCTGCGTGAA
AGAGTGCTTATTAACAAGTGGAAAATGCCAGAGTATGAATCTCAAATTAA
CTTTGAGTGGATTTGATTGTGAAATTTTACAAACAGATATTTATACCTCA
AATAATCTGACCGCAGATGTAGGGTCTATCCATGTCGTTATTGTTGTAAG
TATCTTCATATATTAAAACTATAAAGCCATGCTGATATAGTTTTTAGAGT
TAATAGATTTCTAACAAAAGAAAGGTCTTTTTTTCGGATCTTAAAGAATT
TCTTTGAAGCCGGAAAAATCAATTTCATTTTACACAGAAAGGCCTAGATC
TCTTCAAAACTTTACGATGTATAGGCTGAAACGGGAATTTATTGAAACCG
TCTTTGTAATCGCCTAACACGGGCCTAACACGGTATTGTCTGTACAAAAA
CCCAATATCTACGGCTAATTTCAAAATTCATTGCGCTACGATAGTCGTGA
GATACACTCTGGTACAGAGTAAACACGGTAGAGCATTACACAATGCTTAA
GAAATAAATGAAAAAAATGAAAGGAAAGAAGAATAACATTTTTTCATAGA
CGGAAACCCGTTGATTCTTACCGAACTCCTCGTGTGAACTTCGTGAAATA
GGGGAACGGGAAATGTGGTCTAGAAAGAACTTAATAGCTAATTAAACGAA
AAAATTATTTTTCTTTGTTTTTTTTTAAAAGAATGGTTGTAGTAAAGATC
CTTGTCAAAGAGAGGAGAATTGTGTACCAAACTACCAGGATGACTCGTAC
GCATGCGTGAACATAAGTAAGTACCACATAACTAATTAATGGCCTAAAGT
TAGGGTTTTTATGACAATTACAATTTTGGAGAAAGTTGGACCTTGACTCT
GATCATGCCCGATCTTATTTCCTATATCAATACGCTTCATGAGAGCTTTA
AAAACCTTTATGCAAAGTCTTGGAACTTCATGTCGTCATGCGTTAGGCTG
CACTTAAAAAAAGAGTTTACTTTGAAGATTTCAACTTTTCAAAACAGCAG
GTAGTTGTAAAAGGGAAAGGGATAATATAATAGAAAATATAATTTCTTAA
GCTTAAGATAGAACAGGACAGGCAAGATACAGGTTTTGATATGAAGGTTT
GAAATTTTTGAAGAAAAAATAATTCTACTATAAAATGGCAATAAATATTT
TGGGTCGGCAGGTTTCGGGGTAAGTAGGTCGGGTGAAGACATTCAATACT
TTCTATTATTATCGATTCAAAACATTGGTTGAAACGATATGATCTTCAAA
TTAAAATTCGTTTGAGTTTCTTTTCTGTAGACGCACGAACGTGCAAAGAG
ATGAAAGATAGAAAGCCTTTAGCAACATCAGGATATTACAAGATCAATTT
GAACGGGAAAATGCGAGATGTTTACTGTGATATGGACACTGATCATGGTG
AGTACCGTAAAATATAATTCCTGTTTCACTTTGTTTTAGATACTATATAG
TTGAGTACTCTCGGGTACCTAATAGCCGTCCCCCCCCGCTTATTAATTTT
TGGGAAAATGTTTTTGAAAGGTCCCTCTTTTGTCCTAATTCTGCTGTATT
AGCCTCCTTTTCAAAAATTTTCCACCCAGGACATTTTTATTCCAACCCCT
CATGCTTATTAAGTTTTGAGATATGTTCTGCAGGATCCTCAATTTTATCT
TGACTCTGATCATAGGGATTGATGTTTCTTTCAAAAATAAATTGTTCAGT
GTGTTAAAGATAATAAAATATTCAAAAGCGTTTCTATATTTTTCAAGGTG
GATGGATGATGTTGGCTAACTATACAAACAAATTTGCAAGCTCAACTGCA
ACTGAAATGACAATTGGTGACTTGGATTCATTTCTTCAGCTTCAAAATGG
AGATTTTCTATTGGATGGGGACACTATCTTCCGCAAATTCATTCTCAAAC
TCCAATCACAGAAATCAGGTTTTATTGTCACAAGCCAAACGTTGGAAGAA
CAATAAGCTTCGTCACAAACCATAATGCAGTTGGTGTTGAGCTAAAAGAA
TATATCTTAGGTCTCAATAATGGTGGGTTATGTAACCGTGCAATAGGTCG
AACCGAATCTGTCAGAACATTGGATGATGATACTAGCTTTCTATCACGTA
ATATTAACTGTTTTGGTGGAAGCAGCTGGTTCACACCAAATCAAAGACTT
TATGATCACCCAGTGTGGGCTGATTATTGGCCTAATGGTTTGAGCTCCAA
AGTTCATTTTGTTGTGTTGCCAAATCGTCTAGACTGTGATGATGGGACTC
AGGGTCAAGACACTAAAAAACCTGGCACTTTCAGAGTATACATACGATAA
TATGATATTGATCATCAAATTAGAGCATTCCCACAAAATCCCAAAAATAT
ACAAACATTAGACATGAGCTTGAAAATGAAAAGTTTCATTTAATCATAAA
CAATGAGATCTTTTCTTAGAGCAAGGATTTACGGTCAACTGATTTACAGT
ACCATACAAACTTATCAAACTTAAAAACTTTACATATCGAATTAACTACA
ATATTTTTTATTTATTTTTTCACACTTCTCACAATCTTGTTTCTATGCCT
AGTCCTCGGCCTATATAAAATCATAATATATTTACGAGATATTATTCATC
TAAGAATAGTTTATTTATTTCTTACTGTCTGCCATAATTTATCTAGGACG
ACTATCTTGCGAACAAGCCGTTATCCAGTTTAATTATTACTAATCGAAAA
AACTTCCAAACGTCATATCTCAGTATTCTGATTCCGAGCTTCACTTAGTT
TTCCTTATTCCTTCCGATTGAGTCCTTCTTCCCGTATCTGTTCGTGTTGT
TATTTATTTATATATTTTATACACACAGCATATACATTATATAACACTTT
TCTTGTAAGAAGAACCAATATTTTTGGAGATCAAGGAAATAATAATGTTT
AAAAAAAAACAACAAAAAAAACAAAAAACATATAGAATGTTTTTAATAAA
CAATTTACAAGGAACTCACAGACAACATTTATGTATGTATACCGAATTCA
TCGTTCTACATTTGCAATTATGACTTTACTAAGCTAATTTGACATCGATT
GCCTAAAAGGTTGATAGTGAAACATGCTATAACGATAGCTTTAGACTAAA
TCTCCGATATCAACATTACAGGATTTACCGTGCGGCTAGATTTCACTTTC
GTTTTTAGTTGTTTCAATTTTTCAAATTTCAAACCAGCATCTTGGCAATA
GCATTTAAAGTTTTTGCTGACATCATATTGAAAACAGCAATAATTTCAAT
AATTTTTGGATGCTTTCGAACTTGCCTCAACCTACCTGACACTGGTAATG
AGTGCAGTGCCTTCTTTATTTCATGGAAGTAATTGTATTGAGTTTTAATC
AATCAATAAGAATAAAACTGCCATTTTTCAAAAAATGGGAAAACAAAAGT
GACACAAATCAATTAACAAAAGAGATATCGTATACTTTCTGTTGTGTATG
TATACGTATATTAGAATTATTCACATAAGCTGTCTAGAAAGGAAATTTTT
CTCTGAAATAATAAGAATACGTTAAGAATATTTCACCCTCAATTTTAGCA
ATTTCTTAAGAATACTTCACCCTCAGTCAAAGTACATAATTCTTATAAGA
AAAAGCGTGTAGTCTTTTGTCCTGGCTGAGGGCA Coding sequence (CDS) from alignment at scaffold_361:568463..572346- >TCONS_00061995 ID=TCONS_00061995|Name=TCONS_00061995|organism=Clytia hemisphaerica|type=CDS|length=3216bp|location=Sequence derived from alignment at scaffold_361:568463..572346- (Clytia hemisphaerica)
GTGGATGGATGATGTTGGCTAACTATACAAACAAATTTGCAAGCTCAACT
GCAACTGAAATGACAATTGGTGACTTGGATTCATTTCTTCAGCTTCAAAA
TGGAGATTTTCTATTGGATGGGGACACTATCTTCCGCAAATTCATTCTCA
AACTCCAATCACAGAAATCAGGTTTTATTGTCACAAGCCAAACGTTGGAA
GAACAATAAACGCACGAACGTGCAAAGAGATGAAAGATAGAAAGCCTTTA
GCAACATCAGGATATTACAAGATCAATTTGAACGGGAAAATGCGAGATGT
TTACTGTGATATGGACACTGATCATGAATGGTTGTAGTAAAGATCCTTGT
CAAAGAGAGGAGAATTGTGTACCAAACTACCAGGATGACTCGTACGCATG
CGTGAACATAAATAGACAACAACGCTGAAAAAATGTTTGAAAAATTGAAT
ATTATTTTTCCAGTGAGTTATCTGGCTATCATTTTCTCAAGTATTGCAAC
ACTTTATTGCTACCAATCTTCACGCGTTATTCATAAGCCAGAGGGAACAA
AAATCTCAGTCAATATCAGTTACATTCGTGTTAAATATATGACAGGTCAT
CGAATGGTCGACCCCCCAATAAAGGCTTTAACAACAAACGATAAGGAAGG
CTGCGTGAAAGAGTGCTTATTAACAAGTGGAAAATGCCAGAGTATGAATC
TCAAATTAACTTTGAGTGGATTTGATTGTGAAATTTTACAAACAGATATT
TATACCTCAAATAATCTGACCGCAGATGTAGGGTCTATCCATGTCGTTAT
TGTTGTGGATGGATGATGTTGGCTAACTATACAAACAAATTTGCAAGCTC
AACTGCAACTGAAATGACAATTGGTGACTTGGATTCATTTCTTCAGCTTC
AAAATGGAGATTTTCTATTGGATGGGGACACTATCTTCCGCAAATTCATT
CTCAAACTCCAATCACAGAAATCAGGTTTTATTGTCACAAGCCAAACGTT
GGAAGAACAATAAACGCACGAACGTGCAAAGAGATGAAAGATAGAAAGCC
TTTAGCAACATCAGGATATTACAAGATCAATTTGAACGGGAAAATGCGAG
ATGTTTACTGTGATATGGACACTGATCATGAATGGTTGTAGTAAAGATCC
TTGTCAAAGAGAGGAGAATTGTGTACCAAACTACCAGGATGACTCGTACG
CATGCGTGAACATAAATAGACAACAACGCTGAAAAAATGTTTGAAAAATT
GAATATTATTTTTCCAGTGAGTTATCTGGCTATCATTTTCTCAAGTATTG
CAACACTTTATTGCTACCAATCTTCACGCGTTATTCATAAGCCAGAGGGA
ACAAAAATCTCAGTCAATATCAGTTACATTCGTGTTAAATATATGACAGG
TCATCGAATGGTCGACCCCCCAATAAAGGCTTTAACAACAAACGATAAGG
AAGGCTGCGTGAAAGAGTGCTTATTAACAAGTGGAAAATGCCAGAGTATG
AATCTCAAATTAACTTTGAGTGGATTTGATTGTGAAATTTTACAAACAGA
TATTTATACCTCAAATAATCTGACCGCAGATGTAGGGTCTATCCATGTCG
TTATTGTTGTGGATGGATGATGTTGGCTAACTATACAAACAAATTTGCAA
GCTCAACTGCAACTGAAATGACAATTGGTGACTTGGATTCATTTCTTCAG
CTTCAAAATGGAGATTTTCTATTGGATGGGGACACTATCTTCCGCAAATT
CATTCTCAAACTCCAATCACAGAAATCAGGTTTTATTGTCACAAGCCAAA
CGTTGGAAGAACAATAAACGCACGAACGTGCAAAGAGATGAAAGATAGAA
AGCCTTTAGCAACATCAGGATATTACAAGATCAATTTGAACGGGAAAATG
CGAGATGTTTACTGTGATATGGACACTGATCATGAATGGTTGTAGTAAAG
ATCCTTGTCAAAGAGAGGAGAATTGTGTACCAAACTACCAGGATGACTCG
TACGCATGCGTGAACATAAATAGACAACAACGCTGAAAAAATGTTTGAAA
AATTGAATATTATTTTTCCAGTGAGTTATCTGGCTATCATTTTCTCAAGT
ATTGCAACACTTTATTGCTACCAATCTTCACGCGTTATTCATAAGCCAGA
GGGAACAAAAATCTCAGTCAATATCAGTTACATTCGTGTTAAATATATGA
CAGGTCATCGAATGGTCGACCCCCCAATAAAGGCTTTAACAACAAACGAT
AAGGAAGGCTGCGTGAAAGAGTGCTTATTAACAAGTGGAAAATGCCAGAG
TATGAATCTCAAATTAACTTTGAGTGGATTTGATTGTGAAATTTTACAAA
CAGATATTTATACCTCAAATAATCTGACCGCAGATGTAGGGTCTATCCAT
GTCGTTATTGTTGTGGATGGATGATGTTGGCTAACTATACAAACAAATTT
GCAAGCTCAACTGCAACTGAAATGACAATTGGTGACTTGGATTCATTTCT
TCAGCTTCAAAATGGAGATTTTCTATTGGATGGGGACACTATCTTCCGCA
AATTCATTCTCAAACTCCAATCACAGAAATCAGGTTTTATTGTCACAAGC
CAAACGTTGGAAGAACAATAAACGCACGAACGTGCAAAGAGATGAAAGAT
AGAAAGCCTTTAGCAACATCAGGATATTACAAGATCAATTTGAACGGGAA
AATGCGAGATGTTTACTGTGATATGGACACTGATCATGAATGGTTGTAGT
AAAGATCCTTGTCAAAGAGAGGAGAATTGTGTACCAAACTACCAGGATGA
CTCGTACGCATGCGTGAACATAAATAGACAACAACGCTGAAAAAATGTTT
GAAAAATTGAATATTATTTTTCCAGTGAGTTATCTGGCTATCATTTTCTC
AAGTATTGCAACACTTTATTGCTACCAATCTTCACGCGTTATTCATAAGC
CAGAGGGAACAAAAATCTCAGTCAATATCAGTTACATTCGTGTTAAATAT
ATGACAGGTCATCGAATGGTCGACCCCCCAATAAAGGCTTTAACAACAAA
CGATAAGGAAGGCTGCGTGAAAGAGTGCTTATTAACAAGTGGAAAATGCC
AGAGTATGAATCTCAAATTAACTTTGAGTGGATTTGATTGTGAAATTTTA
CAAACAGATATTTATACCTCAAATAATCTGACCGCAGATGTAGGGTCTAT
CCATGTCGTTATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061995-exon-scaffold_361-1575043694:571952..572346 | TCONS_00061995-exon-scaffold_361-1575043694:571952..572346 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1575043694:571331..571415 | TCONS_00061995-exon-scaffold_361-1575043694:571331..571415 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1575043694:570700..570816 | TCONS_00061995-exon-scaffold_361-1575043694:570700..570816 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1575043694:569614..570349 | TCONS_00061995-exon-scaffold_361-1575043694:569614..570349 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1575043694:568463..569167 | TCONS_00061995-exon-scaffold_361-1575043694:568463..569167 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1510915933:571952..572346 | TCONS_00061995-exon-scaffold_361-1510915933:571952..572346 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1510915933:571331..571415 | TCONS_00061995-exon-scaffold_361-1510915933:571331..571415 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1510915933:570700..570816 | TCONS_00061995-exon-scaffold_361-1510915933:570700..570816 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1510915933:569614..570349 | TCONS_00061995-exon-scaffold_361-1510915933:569614..570349 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1510915933:568463..569167 | TCONS_00061995-exon-scaffold_361-1510915933:568463..569167 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1491911889:571952..572346 | TCONS_00061995-exon-scaffold_361-1491911889:571952..572346 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1491911889:571331..571415 | TCONS_00061995-exon-scaffold_361-1491911889:571331..571415 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1491911889:570700..570816 | TCONS_00061995-exon-scaffold_361-1491911889:570700..570816 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1491911889:569614..570349 | TCONS_00061995-exon-scaffold_361-1491911889:569614..570349 | Clytia hemisphaerica | exon |
| TCONS_00061995-exon-scaffold_361-1491911889:568463..569167 | TCONS_00061995-exon-scaffold_361-1491911889:568463..569167 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:568463..572346 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002181 | Fibrinogen_a/b/g_C_dom |
| IPR014716 | Fibrinogen_a/b/g_C_1 |
Blast
The following BLAST results are available for this feature:
|
