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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062005 ID=TCONS_00062005|Name=TCONS_00062005|organism=Clytia hemisphaerica|type=transcript|length=2826bp
NNTTCGTGAAAAAATGCCGCCTTCTTACAATCACTTCAGCAGTTTCATGA
AAGATCCAAATCTGCATTCCATCCTCTTAGCACCAACCACTTATCAAGAA
ATTGCGTAGGTGATTGGCTCTTTCTCAATAAATAAAGCAAGTGGTCCTGA
AAGTATTCCTATAAAAATCCTTAAACTTTTAAGACTTGATATTTCTGTGC
CAATATCGGCGCTGATAAACTACTCCTTTCTCAGTGGTATTTTTCCCTCT
AAAAATATCTAAAGTTGTGCCTGTCTTCAAACACAAAGGTTCTCCCCTTG
AAGTCTCTAATTCTATCTCTAGACAATCatcaaaataaagtaaaatagtG
TGGAAAATGAATTAATGtacaataaaatttcttgatTCGGGTCGTTAAAA
AGTGTTTAAAGTATTTTAGACaaggggggcactcgatttctaaatgacgt
catgtgccgccaaaaaaatGGCTTCCAAAAATCGGACCCTTGCAGTGCAG
CCTTTGAGCAGTGAAAAAGTATCCTTACAGTAcattttaccgaacgtttc
tcttccttacagtgtagtttgatttaagtgtcgacacaatgtgcaaaata
aatcaaaatgggtgcgaGTCAGGACTATAAAGATATGATCAGATTTTTAC
CGTCAGACTTGCGATTCAGCAGTCCctaaacacacccttacagtgtatcc
agctaaaatAAGACCATTGTAGTGCATTCTATCAAGAGTGTACTTGATAC
AAtgcatttcgagggtctcgaaaattctacccttaagggcggcgtATGAG
CGCCCCCTCCCCCACGGTTTGATAAGTATTTGGTCCCATTTTTTTATGAT
TGGGTATATGTGAATGAGTCCGATAGTGACTTTCTCTATGAAAGTCAAAT
TTGTACAAATGCCAAATTGTAAATACAGTCATCCAATCTTACTGAAGTGA
ATAGTTGCTCATCTTATCTAACATATTCTAAAGATGTATTTAATTTTGTT
GTGTGTATGGGAGTTGTAATCATATTATTTATGTAATTGTCTATTGTCTA
AActtctatatttttatttatgTAATAGAATTTTATTgagttatgattaa
aaaaaaatgatataaaatgcAAAATGTAACAATATTTATGACCATTTTAT
TATCCTATTTAATTTTCCTAtcatttattttattaattattctatttttt
ttagctatacAGTGTTCTTAAAGttattgtttttaaagaagTGACAGTGG
CTTACAAATCatcacaatttttgatttttaggtaaaagattaaaaaaatg
gaATGGCTTTGGAACACAACAAAAGATAATTATAATTATTACGTGAGACA
AAACTATGACTATTATCTGAAAGATAGAGTTGATACAACGTACAATGATG
CAAAAAGATGGCTTGGATATCGTCAGCCATTTTTATTTCATGTTAACAAA
ACACCAATAGATCaaattgaagaaattcaaaatttattagATGAGTTAGG
TTACAAGGATATTGGTCATTTGGAGTTTTCTGAATCCAATCAAACTGACT
TCGCCAAAATTGTCTCTGGTGCACAATCAGATTTTCATTACCCTGCAATC
TATTTCAGTGTGGCTGATTATTCATGGATGAAATGGATAGGTATTGCGGC
ATTTGCTGGAGTCACAGCACCCCTTGTTCTTCCATATTGTCTAGGTGCAC
TTGGATTTGCAAAAGCTGGCATTGCAGCAAACAGTTTGGCAGCAACCATT
CAGCCGATATTATACAAGGGAACAACAACTGGTGTGTTTTCTTTGCTACA
AAGTGCTGGTGCTGGTGGTTTGAGCGTGGCTGGAAATGTTGCTGTTGGTG
GTGCAGCATCTTCAACAGTTGTGGCTGGAGGTAAAATCACCGGAGCTGTA
TTAACTGACGAGGCTAAAGAACAAGTATTCAATCCAGATCTGAATATGAA
GCTGGTAATTTTCTACAGGGAAGGTCAGAAATGGGACGACTTTTCAACAG
TATCAAAATACgtgaaaacaaattttggaATAAACACAGAACAAATGGAT
GTAGGTAAAAATCTTATTGGCATTGAATCTACTAAGGAAAAGGAAGATGA
TTTCAATTCACTTTGTAAAGAGGAGAGGAAGCTTCCAATAGCACCCGGTG
GTATTCTGTCATTACAATTCACAAAAGAATATCTCGTTAATAATGAAGCA
TGGCGAATCTTAAAAGCTTTGCCCAAAGATCCTTCAAAATTATGAAAACA
TCactccaatgaaataggaaagTGACGCTTTCATTCATCGAGTTTTATGA
ACAACTAGTAAGTTTGTTTTCGaagattgattttcttttatgaTTTCTAA
TTATTTCTAAAACGGTCAAATATTTTACACTATTTTACAAACAGTTGAGT
TTGAAAAAGAGTTAGACAAAAATTTATGTAGATTTTGCTCAGGATTTTAC
TTCCCTTTAATGCTAAAGTATACCTTAGAGAGACATTACTGTAGTAAACT
GTTAACATTGCACAAATTACGTGTCTGTAAATGAAACAATTCAAATCACG
TACCAAAAACTAATTtattaaacaatagaaattaaaattagccatattta
tGCAGAGACTAAATAGTTTGTTTCAAACCATCACAAGTCGCTGCCAGAAT
CTTATttatattcttgatattcatgacgtaatcttttgtACGGAAACACC
TGAAGAACACCGGGCATTTGCCACAAATGGTGTTCTTCGGGTGTTTCCGT
TATCTGGCACCcacagatggtgaaattttcatccgacacgctaaagctct
gaaggtcgggaaaattttcaacatct Run BLAST on NCBI transcript from alignment at scaffold_361:721410..724567- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062005 ID=TCONS_00062005|Name=TCONS_00062005|organism=Clytia hemisphaerica|type=transcript|length=3158bp|location=Sequence derived from alignment at scaffold_361:721410..724567- (Clytia hemisphaerica)
NNTTCGTGAAAAAATGCCGCCTTCTTACAATCACTTCAGCAGTTTCATGA
AAGATCCAAATCTGCATTCCATCCTCTTAGCACCAACCACTTATCAAGAA
ATTGCGTAGGTGATTGGCTCTTTCTCAATAAATAAAGCAAGTGGTCCTGA
AAGTATTCCTATAAAAATCCTTAAACTTTTAAGACTTGATATTTCTGTGC
CAATATCGGCGCTGATAAACTACTCCTTTCTCAGTGGTATTTTTCCCTCT
AAAAATATCTAAAGTTGTGCCTGTCTTCAAACACAAAGGTTCTCCCCTTG
AAGTCTCTAATTCTATCTCTAGACAATCATCAAAATAAAGTAAAATAGTG
TGGAAAATGAATTAATGTACAATAAAATTTCTTGATTCGGGTCGTTAAAA
AGTGTTTAAAGTATTTTAGACAAGGGGGGCACTCGATTTCTAAATGACGT
CATGTGCCGCCAAAAAAATGGCTTCCAAAAATCGGACCCTTGCAGTGCAG
CCTTTGAGCAGTGAAAAAGTATCCTTACAGTACATTTTACCGAACGTTTC
TCTTCCTTACAGTGTAGTTTGATTTAAGTGTCGACACAATGTGCAAAATA
AATCAAAATGGGTGCGAGTCAGGACTATAAAGATATGATCAGATTTTTAC
CGTCAGACTTGCGATTCAGCAGTCCCTAAACACACCCTTACAGTGTATCC
AGCTAAAATAAGACCATTGTAGTGCATTCTATCAAGAGTGTACTTGATAC
AATGCATTTCGAGGGTCTCGAAAATTCTACCCTTAAGGGCGGCGTATGAG
CGCCCCCTCCCCCACGGTTTGATAAGTATTTGGTCCCATTTTTTTATGAT
TGGGTATATGTGAATGAGTCCGATAGTGACTTTCTCTATGAAAGTCAAAT
TTGTACAAATGCCAAATTGTAAATACAGTCATCCAATCTTACTGAAGTGA
ATAGTTGCTCATCTTATCTAACATATTCTAAAGATGTATTTAATTTTGTT
GTGTGTATGGGAGTTGTAATCATATTATTTATGTAATTGTCTATTGTCTA
AACTTCTATATTTTTATTTATGTAATAGAATTTTATTGAGTTATGATTAA
AAAAAAATGATATAAAATGCAAAATGTAACAATATTTATGACCATTTTAT
TATCCTATTTAATTTTCCTATCATTTATTTTATTAATTATTCTATTTTTT
TTAGCTATACAGTGTTCTTAAAGTTATTGTTTTTAAAGAAGTGACAGTGG
CTTACAAATCATCACAATTTTTGATTTTTAGGTAAAAGATTAAAAAAATG
GAATGGCTTTGGAACACAACAAAAGATAATTATAATTATTACGTGAGACA
AAACTATGACTATTATCTGAAAGATAGAGTTGATACAACGTACAATGATG
CAAAAAGATGGCTTGGATATCGTCAGCCATTTTTATTTCATGTTAACAAA
ACACCAATAGATCAAATTGAAGAAATTCAAAATTTATTAGATGAGTTAGG
TTACAAGGATATTGGTCATTTGGAGTTTTCTGAATCCAATCAAACTGACT
TCGCCAAAATTGTCTCTGGTGCACAATCAGATTTTCATTACCCTGCAATC
TATTTCAGTGTGGCTGATTATTCATGTAAGTATTGTGTGGTAGTGGCCGT
AGCATATGAGGTATACAGCATTTGTGTTTTGGTCACACAAGTTTATGAGT
TCAATATCTAGCGCAGTCTCTCACAATCTTTTTTGAAATCATTTTGATGT
TTAACATGTTCTATTCTTAGGGATGAAATGGATAGGTATTGCGGCATTTG
CTGGAGTCACAGCACCCCTTGTTCTTCCATATTGTCTAGGTGCACTTGGA
TTTGCAAAAGCTGGTATGAGATTTTAAATCATATTCTCAGACACAATATA
CCATGTAATAATTCTTAACTAATGGAAATTATGAATTCATGTTTATTTTT
CACATTAATATCGAAGAACTTTTTATTTATTTTGTTGAAAAAATAAGCTG
AAACATTCTAAATACAATATATCAGTATTCTTTCTGTGTCTTTATCTCAG
GCATTGCAGCAAACAGTTTGGCAGCAACCATTCAGCCGATATTATACAAG
GGAACAACAACTGGTGTGTTTTCTTTGCTACAAAGTGCTGGTGCTGGTGG
TTTGAGCGTGGCTGGAAATGTTGCTGTTGGTGGTGCAGCATCTTCAACAG
TTGTGGCTGGAGGTAAAATCACCGGAGCTGTATTAACTGACGAGGCTAAA
GAACAAGTATTCAATCCAGATCTGAATATGAAGCTGGTAATTTTCTACAG
GGAAGGTCAGAAATGGGACGACTTTTCAACAGTATCAAAATACGTGAAAA
CAAATTTTGGAATAAACACAGAACAAATGGATGTAGGTAAAAATCTTATT
GGCATTGAATCTACTAAGGAAAAGGAAGATGATTTCAATTCACTTTGTAA
AGAGGAGAGGAAGCTTCCAATAGCACCCGGTGGTATTCTGTCATTACAAT
TCACAAAAGAATATCTCGTTAATAATGAAGCATGGCGAATCTTAAAAGCT
TTGCCCAAAGATCCTTCAAAATTATGAAAACATCACTCCAATGAAATAGG
AAAGTGACGCTTTCATTCATCGAGTTTTATGAACAACTAGTAAGTTTGTT
TTCGAAGATTGATTTTCTTTTATGATTTCTAATTATTTCTAAAACGGTCA
AATATTTTACACTATTTTACAAACAGTTGAGTTTGAAAAAGAGTTAGACA
AAAATTTATGTAGATTTTGCTCAGGATTTTACTTCCCTTTAATGCTAAAG
TATACCTTAGAGAGACATTACTGTAGTAAACTGTTAACATTGCACAAATT
ACGTGTCTGTAAATGAAACAATTCAAATCACGTACCAAAAACTAATTTAT
TAAACAATAGAAATTAAAATTAGCCATATTTATGCAGAGACTAAATAGTT
TGTTTCAAACCATCACAAGTCGCTGCCAGAATCTTATTTATATTCTTGAT
ATTCATGACGTAATCTTTTGTACGGAAACACCTGAAGAACACCGGGCATT
TGCCACAAATGGTGTTCTTCGGGTGTTTCCGTTATCTGGCACCCACAGAT
GGTGAAATTTTCATCCGACACGCTAAAGCTCTGAAGGTCGGGAAAATTTT
CAACATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062005-exon-scaffold_361-1575043694:722943..724567 | TCONS_00062005-exon-scaffold_361-1575043694:722943..724567 | Clytia hemisphaerica | exon |
| TCONS_00062005-exon-scaffold_361-1575043694:722705..722797 | TCONS_00062005-exon-scaffold_361-1575043694:722705..722797 | Clytia hemisphaerica | exon |
| TCONS_00062005-exon-scaffold_361-1575043694:721410..722517 | TCONS_00062005-exon-scaffold_361-1575043694:721410..722517 | Clytia hemisphaerica | exon |
| TCONS_00062005-exon-scaffold_361-1510915933:722943..724567 | TCONS_00062005-exon-scaffold_361-1510915933:722943..724567 | Clytia hemisphaerica | exon |
| TCONS_00062005-exon-scaffold_361-1510915933:722705..722797 | TCONS_00062005-exon-scaffold_361-1510915933:722705..722797 | Clytia hemisphaerica | exon |
| TCONS_00062005-exon-scaffold_361-1510915933:721410..722517 | TCONS_00062005-exon-scaffold_361-1510915933:721410..722517 | Clytia hemisphaerica | exon |
| TCONS_00062005-exon-scaffold_361-1491911889:722943..724567 | TCONS_00062005-exon-scaffold_361-1491911889:722943..724567 | Clytia hemisphaerica | exon |
| TCONS_00062005-exon-scaffold_361-1491911889:722705..722797 | TCONS_00062005-exon-scaffold_361-1491911889:722705..722797 | Clytia hemisphaerica | exon |
| TCONS_00062005-exon-scaffold_361-1491911889:721410..722517 | TCONS_00062005-exon-scaffold_361-1491911889:721410..722517 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:721410..724567 - |
Blast
The following BLAST results are available for this feature:
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