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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062013 ID=TCONS_00062013|Name=TCONS_00062013|organism=Clytia hemisphaerica|type=transcript|length=1504bpRun BLAST on NCBI protein sequence of TCONS_00062013-protein >TCONS_00062013-protein ID=TCONS_00062013-protein|Name=TCONS_00062013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp HRNKPLKSIFNSKMSFDKYKEKVEEGDTVVLYLGRNSALSFQIDVTKTHQRun BLAST on NCBI transcript from alignment at scaffold_361:745539..755927- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062013 ID=TCONS_00062013|Name=TCONS_00062013|organism=Clytia hemisphaerica|type=transcript|length=10389bp|location=Sequence derived from alignment at scaffold_361:745539..755927- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:745539..755927- >TCONS_00062013 ID=TCONS_00062013|Name=TCONS_00062013|organism=Clytia hemisphaerica|type=CDS|length=12720bp|location=Sequence derived from alignment at scaffold_361:745539..755927- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062013 vs. Swiss-Prot (Human)
Match: TRM61 (tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Homo sapiens GN=TRMT61A PE=1 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 1.233e-98 Identity = 139/254 (54.72%), Postives = 182/254 (71.65%), Query Frame = 1
Query: 40 MSFDKYKEKVEEGDTVVLYLGRNSALSFQIDVTKTHQTKYGAFPHK-DLIGKAFGTKAYSMKGKGFAYLLHPTPELWTVTLPHRTQILYSTDISQITMELDLKPGSIVVESGTGSGSLSHSIVRTIKPNGHLHTFDFHEKRVESAREEFEHHGISQYITSKCADACVDGFGLEDCADAVFLDLPKPWDAIPHAKKALKKSGGRICSFSPCIEQVQRSCIVLRRLGFCEVKTVECLVRAMNVRTTPMPEANTGAG 798
MSF Y+E ++EGDT +L LG + ++ ++ QT++G H DLIG+ FG+K +G G+ Y+LHPTPELWT+ LPHRTQILYSTDI+ ITM L+L+PGS+V ESGTGSGS+SH+I+RTI P GHLHT +FH++R E AREEF+ H + +++T + D C GFG+ ADAVFLD+P PW+A+ HA ALK GGR CSFSPCIEQVQR+C L GF E+ T+E L + NVRT +P + G G
Sbjct: 1 MSFVAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG-GWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGFGVSHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVLPQVYNVRTVSLPPPDLGTG 253 The following BLAST results are available for this feature:
BLAST of TCONS_00062013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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