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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062015 ID=TCONS_00062015|Name=TCONS_00062015|organism=Clytia hemisphaerica|type=transcript|length=1434bp
TTTAAAGCTGTAATCATTTTTTGTCGTGTTTCATTGACTAGAGGCTTTCT
CATAGAAAGTTATCTTTCATTAAGCCTACCAGCTTATTTTGTATCAGTTG
AAAACTTGAGGCGCTCATTTTACTataattctacaacaagaatcaaTTTG
CGCTGAACGATGgtttttaaagataaatttttcgGTGATCGTCATGCATC
GACCGTCCACGATCACGTGATCTTACCCAAACAACTGACAGACGATTTCT
ATTCCACATGGACGCAATGTTACGAAGAACTTTTCCACGCTTCACTTTCA
CCGAAATATATCCAGCGTAAAGAATCAACAGCTAGTACTTCGGGTAGACC
AACATCTCGATACGGACTACATCATTCTGTGTCTGAAATGAACTTAGCGT
CCGGTTTCAATGATGGATACGCTTCAGGAGGCGCCCGGTCGCGTAACAAA
CAAATGCATCGTCTGTCGTTAGATGTTTCGAACATGAATCTTGATATTAC
GCCGGATGAGCATCCCTATCGACGTCATCAAAGACATTTATCTGATTCAG
AATCTTCCATGAGATCAAGTAACGAACGAACATCGAATCTCGCCAAATTC
TTCGGACGCAAAAAAGTGTATAAACTTTCGGACACTACTTCGTCAGCAAC
GCAGAATTCTTCAGCTGCGGATTAAAACTAGGTTAGTAGAATGGAACATG
GTTGCGTATCATATAACCTTTGATGAAGAATGTTATAGTGAAGAGGCGGA
GTTACATTGTGGAGGAGCCAAACCAGTGGGATGACTCTAAGCTTGCACAT
TTTTTGTGAGACGGCTTCGCATAACTGGATTTGAAATATTGTTAAGGATC
TTTCCCTTGAATAGTACTGTTAGATTCTTACAGTTGTTGTTTTCAAACAG
CCAGACATTGTAACAGAGATATTCAAATCCTTTGAAATTATTTATGATAT
TCATgaagtaatgttttctacggaaaatcccggtttttgccagtagtggc
aaattttatacaacttttgtctagtttaaatttgtcactactggctaaaa
ccggggtatttccgtagaaaacattacgtcgtgAATATCTTGAATTAAAT
ATTGGTAGATTAGATTTACCTAATTATAATGAACTTCAGAAGGTATACAT
GAAATTTGCCAACTAATGCCTTGTAATGAATCAATGGTCTTTACAAATGC
TCTCCTCCAATGTGATTTTTACCTCCGTAGTAAAATAAATTTGACGTAGA
GAACTTTTCGAAATAGACTAGAAACTTTCTCTGTTTTGCCTTTAGGATAG
ATTTTCAATTAAATATTGTTGTCAAATATCTTGTATTTATgacatgttat
tgtattttttgagacTTAGATGATTTTAATTCGTGTAAATATGTTTTTCA
TAAagttcaagaaaatatttaaaattatgAAACT Run BLAST on NCBI transcript from alignment at scaffold_361:786340..793980- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062015 ID=TCONS_00062015|Name=TCONS_00062015|organism=Clytia hemisphaerica|type=transcript|length=7641bp|location=Sequence derived from alignment at scaffold_361:786340..793980- (Clytia hemisphaerica)
TTTAAAGCTGTAATCATTTTTTGTCGTGTTTCATTGACTAGAGGCTTTCT
CATAGAAAGTTATCTTTCATTAAGCCTACCAGCTTATTTTGTATCAGTTG
AAAACTTGAGGCGCTCATTTTACTATAATTCTACAACAAGAATCAATTTG
CGCTGAACGATGGTTTTTAAAGATAAATTTTTCGGTAAGATTTCTATTCT
TTGTGTTCGTTCTGCTTCGTCTCATGCGAATATGATTTGAATTTCCTGGT
TAGGAATGCAATCGTTTCGGACCAACCAATGGCACAAGGTGAAATTTTTA
CAAGCTCTTATTTGATATGGTTGGTCATTAATGCGTCATCTTTTCTTTTT
TTTTACTTCAAATGACCAATAATCTTATAAAGACTCCATGTCATCTGAAA
CCAATCGGTAATGTATGTATGTAATAGTTTATTTCAAGTTGACGAACAGG
TAGCAACAAAGGCTAATAAAAGTCAACGCTACTTTACAATTTGTAAGGTG
ATTACAAAAAGCCGACACCGTCAATATAGGTTCGGCAGTTCGATGTTCAT
TTCTGTGGAGTGCAGTCAGCCGAAGCTGATGTTTTACTAGCCCGGGTTCA
AAGACCTACTTTTGCTTGACTTTGCCATTTCTCGGGAGTTATGTTACTCG
GACACCCCTCCACTACCTACGAATTTTCGCTTCGATCCCATCAGAAAAAG
CTCAGATATGAAAAATAAAACTTTTGACATCATGATTTGTGCAAGTCATT
GGTAAATTCTGGAAATTTGTTGTGGGCTCGTTAAATCCTACATTTACTGA
ATGATTTACTTTGCTTGGTTTTGATGTGGTGGTTAGTGGTCGAGTTAATG
ATGAATTCTATGGTAAAATTACGTACTATAGAAATTCCTCGTTTTCGCTT
AGTATATGGTTTCTGTTGAATAACCCTTGTAAGCTTGTTAGAGTTGGTAA
ACGATATTGAGCTCTAGATATAACACACTGATGTTCATTTTTGAGAATTA
AATTTTCTTTGTAGAAGGCCTTTTCTTTTAAAACATTGCGAGACTAAGAT
TAATGGAAACTTTGGACTGGATCTTTTTGTAATTTTCAGTTTTCCTTTAA
TTAAATTGATTACATATTTTTTTCTATAAGAACAAACTATATAAGAACAT
AGGGCTTTGATTGCCAAAGTGTTAAGAACATTTTAAGGCTTTGGGAACTC
TAAAACGCCCAATTTTTTTGGGAAATGGACAAAAATGCTCAAAAAATGGC
GAAAGATCAAAACATGCTAAGAACATTTTTAGGCTTAAAACTCAAAAAGT
TAAGAAAATTCGAAGGCTTCAAAGATTTTGGATGTTCTTTTAAAAAAACA
TACCAAAAATCCTCTATTTGTTTAAGCTTGCATCTGTGTACTGTAACTTA
ATTATCGCCGAAAATTTCATTTATTGAAATCAGGCGGCTGATTCGATGAT
CTTTAAATCTCTTTTCATTTTCAAATTACCCCTTAATTTGTTAATGTCAA
CTATTAGAGTTAGCATCTTTCACATGAAAGAGTTTAACAAGGCGCCCAGT
GATTGGTTAGATTTCTGTCAGCATCCAATGAAATTCGTCCTTGCAAAAGC
TTGGAGACATCACTTCTTGTACATACATTAACTTAATTAGTAGAGTTACA
ATTTCCTTTCAATCTTCCGTCTTCCTGCCAATAGTTAATTGTTCCTCTTA
TTGTGTAGGGGTATTCGACCGGTGATAGTTAATTACTTTTATCGCTGCTT
TCCTTTCGTGGGCGCTGAGCTTGAGTGCTTTTTCTTTATAAGAATTACGA
GATTCTCTGAATCTTTGTTTCTCGGTGAATCTGTTCTAATGGTTGAAGGA
CTCCCAAGAGCTATAAGCCAAACCCTGAGCATTGAGAAGGCCACCATTCT
GCAGTGCATTCTCTAGAAGGCTAGGAAAGGTCAAGAAAGAAAATCGAAAT
TGTGTGTTGTACGTAACTATGACGGTATATAGTTCTTATAAAAAACGTCT
TAGCCAATATGATGTGTGTTTAATTCATAATTGAAGACGTGTAGTTTTTG
ACAACCATATGTAATATCGTAACATTTTTATGCACTGCATCCAATCCTCT
CTCTGTACAAAATCACCTTCTCAATATCACAAGACCTTCCCTTCCATTGT
CGGCCTGGTGTTTTGATCTTTAGAATATCTTTTCCTCTTATTGGTGATAT
TGGCAAATTGCAGATTGCAGTTTAGTTTTCTCAAGCTAAATTTTTCACGT
TTTGGCAATATGCAAAATGAAGGATTGTATTTTGTCTGGACTTTCTATCA
GTCAATTACAGTTATTATAATATTCATTATTACAGATACCAACCTATGAA
TTTCTAGCCCTTTGAGGGACTTTTGAGGCATGAAAAGGGTACACTTATGG
CTCGCATATACCTGTCACCCGTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCC
CCCCCCCCAGGTAGTAATGGCAATCTTTGACAATGTTATCGAGAACCACC
TGTAATGGTGATGCGGTCATAAGGCGACAGTCACTCATTTGAAAATATCG
AGAATTGCCCCAACAAATTAATCCAATATGAAAAATACCTCGTTTACTTA
ATGAGTTGAAATGACTTTCATTATCCTGATGAATCTCTTTAAAAATCATG
AGTAACTTTTTAATGACCATTCATAATGGAGAATCGGTCGTTAAATTTCC
AAAAGTTTCTCAGCTCGACACAACCCTTTATGGCTTTAACTCTCAGTACA
GTTTCGTCGTATATCAAGAAATTTGATTCGGTATGATACACCCATGTCTC
ACAACCCCGGTGAAACTTGTTCTCACAATTGGAAAGAAAATTTTTTATCC
AAATTTCCAATGAGGATAGAAAATCTACTTGTCCAAGCTCAAAAAATTTT
CAATTGAATTTTAAATGGGGATGAAATCAAAGTCAATTTCAATTTCTCAC
ACTGGGGACGAAATTTCGGCCAAGTTTTCCAGGGTTGTTATGATTCAGTA
GCAAAATTTGGTAGTGTCATTTTCTTAAAGAATGAGACAAAAAATGCTGT
TTTCTCTAAGGTCTTTTCTTCAAAAACAACCTATTTTATGAGGTATTTTG
ACCTAATCTTTGGCTTTTTAGCTTGCTGTTTCGAGCTGTTTCTTTCTTAC
TGAAGAAAGCACGATGCATTTCTAATTGAAACGTCGCTTGCAATCTTCAA
ATTTTACTCTTAAATAATTGTCTGTCGAATTCCTTTTCCTGGACACATAA
CCTCTGTGTGCGGAAGCTCGTCAAACTTTTTATAGTAATGTCCAATCGAA
GAGTTAATTGTTATTCTTTCTTGGCAATGAATCGTTATTTTGAATCAGTT
GAATATGTTCGACCTTTTGAAAGCTGAGCAAGAGAGGTTGTGAGTTCGAG
TCTCGCTGGATCCGTTGGTTTCCAACCTTTCTGGTGGCTGAGAGCGACTG
CATTCACTTCATTGCAATACATAAGGGCAATATTCATGAGCGAGAGTTGT
TTTTTTTCAAAACTTTTTTTCATATTAGGCAGTATTGTTTTGCCATATGT
TAAGTGAATTCAACTTCAAAAATGAGAAGCGAAATGAAATCAACCCGAGA
ACGTATAGACTCTTTATTTGACTGTTTGGTGTTTTGCCCAGGCCTAGGAT
GGGAATGAGCAATAATTAAGAATCAAGCCGGGACAGGCTCCGGTATACTA
GTATATTTTTATCGTTCATATTTTTTTATTCCAACTTATGTGTAATTTCT
GTAGTATATTACGTTCCGAAAATGCTTGCACAGAGGGCTAGAAGCGAGAA
AAAAAATAATTAAGAATCTTTGTAACTACTGGATAAGCTCTCAACTCTGA
AAATTCCTTAATAAGAATTTCTTCCTATTCCTTGTCAAGGTTTGTTATCT
ACGGGGGGCATCTACTTCCAAGCAGAGATTTCCTTTCCTATCTTCAATTT
GTTTTTAATTTTTTTGTTTTGAAAACAAAACAGCATGATTTACTTTTTTC
CAAATTAGTTGAGAATGATGACCAGCATGCACTGTGCCTGTTTTAGCCTT
TTTTTGAAAAAATATCCTGTTCAGTAACAAATTTTTCCCTAATCAAAAAG
AGTTGTTTTTAGAAGGGATTTCCCACTCTTTTAAACAAGATTTTGCTCAA
AATATTTTCCCCAATTGTGGAATAAATAGATAAACAATTGGCTTTGGAAA
TCAACTAAAAAATCTGCGTTTGGAGACTTGACTCACCCGATCTTCAATTC
ATATTTTACTAACCCCAAAAAAAACATTATTTTAGGTTTTTGGTCAAAAT
AAACCCTTTTTAGTCCCTGTTATATAATTTATGTATTTTTTAACAAACTA
CAAAATGGGTTCTCCTGTTTAATCCTTCAAATCCATTTTTTCACTTAAAG
TCCCTTTTGCGGTATTTTTCACAAGAGCACACAATATCTTTCAAGGCTTA
GAAAGACCTTTTTCTTAAATGCTGTTAATTTTGTTCATCTTTCTAACGTT
CAGAAGACATCCATAGTCAGTGTTTTCGTGTAGATGTATCAAAATGAAAG
AGGTGGGAAACGTGTTTATTCCGTTAACACGCTGTTCACTACATTTTACA
TTTCGTTATAATGTTCTCCCCTTATCTCTCAGCCTTGTTTCTTTTGTTCC
ATAAAAATCTTTGTCTAGCGCCTCAATTCAGAACGAGATCCAAAGGTGCT
CTTACTTACTTGCTTACTTGAACAGGTAATTTCCTTTCTATTCTTCCATT
GGTTCAGTAAAGTTAATCCAAAATCAAATCTTAAGTTTTGTTTGTTAATC
CATTTCGGTACTACTAAACAATTAAGCAATCCCACATTCTCAATTTAACT
ATGGAGGAGAGAATCCTGAAAGATTGAAGTATTAGCTACATCCCTATTAC
GCTGCTATTCTTTGTTTTAGTGTAAACTTGTCTTTAAAAGTTGCGACCAA
AGAGGACCATAGATGGGTGGTAGTAATAACACTGACTGAAGCTGGCTGGC
TGGTATTGGTATTGGTGTATACCCTAGGTGTATTTGGAGTTAATATCTGA
AAGAAATGGTTTAATGATTTTATCATTCTTCTGAAAGCCTCTGCCCCAAA
CCTCTCGTTTCGTGATCATTTGTTATTATACTGTTTATAATTGAAACAAA
TGTTTGTAGACTTCTCTACTCTCTACCAATCTGTTCGTCTTAGACATGAT
AAGCTTCTATAAAGGAGGCTATTGATTCCTATACATAATCAGTCAATATT
TGTTTTCTTTATTAGTCAATATTTAATTCATCAAAATTTTATACTCTCCT
CCTTTTTTATTTTGCTTCGCTTCAAGTTTTTCATCTTCTAAAAAGTGTCT
CTACCATTGTCTTTACCCTTTAAAAAAAGCAAAGAAGATGTGTTTTTTTT
AATGATGAGTAAAAATCTTATTTGATCATCTCTTTATGTTTTATTTTGTT
ATTTAATCTGCTTTAGTAATCTCTACTTTGCTGAAATAACGAATAGAATA
AAAAAAAATAAAGGTTTAAACGTACTTAAGATTAGTCTTAAAATCGGTTA
AAAGGGGTTATAGAAGATTGTACGTGTTCAGAAGAAGTTTTATTTTTGAT
GAAGATGATAACGACATTTTCTTCTTTTTTGGTCACCTTGTAGCTTATTT
CTTGAAAAAAAAGAAATATAAAATTAAAGTTCAATAAAGAGGGCTTGGTT
GATTTTCATTGACTTGTTTCTAAGCTGTGTGATATTTCTCTCCCTTGAGA
ATATGCTTAAAACTGAATATCTAACCACTTACACTTTAAATGGTAGGTTT
TAATGAGGTTTTTTATCACAGTTTTTATTCGTGTTTCTATTTTTATCCGT
ATCCGTTTTCCTTGAACAATTCCATCCGATGTACTTAACAGGCCCGGCGG
AACCACCGTAAAAGTGGGGAGGCTGAAGGCTCAAAATTATTTTGAAATTC
ATTTTGGGGAGGCTGAAATCTCCCCAGTCTCCCTGCTTCCGCCGGGCCTG
TATTAGTCCTCAAAGTAAAGATCTTACCATCAATTTCTCTTAGAATTTAT
TCCATTTATAGGAATAAATCTGAACCCTTTTAATGGTTCTGTTCAGAGAG
ATATGACGGCACTGGCCCCCTTCATCGCACAATTGTAAATGGCCCTCTCT
TAATTGTAAATGAGGAGAGCTTACATAAATTCTACATCTGAGCTCTGTTT
TGTTGTTATTTGCTTCAACTGATGGACAAGGTTCTTCCAGTCACATTCCC
CTCACTGCGACCTCTAAATATTTCTATTTCTCCTTCTACAGGTGATCGTC
ATGCATCGACCGTCCACGATCACGTGATCTTACCCAAACAACTGACAGAC
GATTTCTATTCCACATGGACGCAATGTTACGAAGAACTTTTCCACGCTTC
ACTTTCACCGAAATATATCCAGCGTAAAGAATCAACAGCTAGTACTTCGG
GTAGACCAACATCTCGATACGGACTACATCATTCTGTGTCTGAAATGAAC
TTAGCGTCCGGTTTCAATGATGGATACGCTTCAGGAGGCGCCCGGTCGCG
TAACAAACAAATGCATCGTCTGTCGTTAGATGTTTCGAACATGAATCTTG
ATATTACGCCGGATGAGCATCCCTATCGACGTCATCAAAGACATTTATCT
GATTCAGAATCTTCCATGAGATCAAGTAACGAACGAACATCGAATCTCGC
CAAATTCTTCGGACGCAAAAAAGTGTATAAACTTTCGGACACTACTTCGT
CAGCAACGCAGAATTCTTCAGCTGCGGATTAAAACTAGGTTAGTAGAATG
GAACATGGTTGCGTATCATATAACCTTTGATGAAGAATGTTATAGTGAAG
AGGCGGAGTTACATTGTGGAGGAGCCAAACCAGTGGGATGACTCTAAGCT
TGCACATTTTTTGTGAGACGGCTTCGCATAACTGGATTTGAAATATTGTT
AAGGATCTTTCCCTTGAATAGTACTGTTAGATTCTTACAGTTGTTGTTTT
CAAACAGCCAGACATTGTAACAGAGATATTCAAATCCTTTGAAATTATTT
ATGATATTCATGAAGTAATGTTTTCTACGGAAAATCCCGGTTTTTGCCAG
TAGTGGCAAATTTTATACAACTTTTGTCTAGTTTAAATTTGTCACTACTG
GCTAAAACCGGGGTATTTCCGTAGAAAACATTACGTCGTGAATATCTTGA
ATTAAATATTGGTAGATTAGATTTACCTAATTATAATGAACTTCAGAAGG
TATACATGAAATTTGCCAACTAATGCCTTGTAATGAATCAATGGTCTTTA
CAAATGCTCTCCTCCAATGTGATTTTTACCTCCGTAGTAAAATAAATTTG
ACGTAGAGAACTTTTCGAAATAGACTAGAAACTTTCTCTGTTTTGCCTTT
AGGATAGATTTTCAATTAAATATTGTTGTCAAATATCTTGTATTTATGAC
ATGTTATTGTATTTTTTGAGACTTAGATGATTTTAATTCGTGTAAATATG
TTTTTCATAAAGTTCAAGAAAATATTTAAAATTATGAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062015-exon-scaffold_361-1575043694:793797..793980 | TCONS_00062015-exon-scaffold_361-1575043694:793797..793980 | Clytia hemisphaerica | exon |
| TCONS_00062015-exon-scaffold_361-1575043694:786340..787589 | TCONS_00062015-exon-scaffold_361-1575043694:786340..787589 | Clytia hemisphaerica | exon |
| TCONS_00062015-exon-scaffold_361-1510915933:793797..793980 | TCONS_00062015-exon-scaffold_361-1510915933:793797..793980 | Clytia hemisphaerica | exon |
| TCONS_00062015-exon-scaffold_361-1510915933:786340..787589 | TCONS_00062015-exon-scaffold_361-1510915933:786340..787589 | Clytia hemisphaerica | exon |
| TCONS_00062015-exon-scaffold_361-1491911889:793797..793980 | TCONS_00062015-exon-scaffold_361-1491911889:793797..793980 | Clytia hemisphaerica | exon |
| TCONS_00062015-exon-scaffold_361-1491911889:786340..787589 | TCONS_00062015-exon-scaffold_361-1491911889:786340..787589 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_361 | supercontig | scaffold_361:786340..793980 - |
Blast
The following BLAST results are available for this feature:
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