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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062020 ID=TCONS_00062020|Name=TCONS_00062020|organism=Clytia hemisphaerica|type=transcript|length=1322bp
CTTTGAAGGCTTCGAATGGTTATGACAAAAGTGATAGTTGCAGAAATCAA
AGTTACTGGCTTTCAAAGTCGAGATGGAGCCCCAAACCAAAGAAGTCGAA
TACAGAATCCAAAAATCACTAAATTTCCAAACTGATCAACTGGAACTGTT
AGCGAAAGATGTTTGTGAAATCATCGATGAAATGTCTAAGAGAACTCGTA
AAACGATGAAAAGTGCGAGATTACGCAACACCTTGAACCATTGGAAGAAG
AGCCTGAGTCTTGGAGGAAAATTGTTGCGGACGCCTTTAGGAAGATTTAC
GGTCCTAGAGTCTCGTCCGTGTTAAGATGTCGTCAGTGGTACATCGAAGG
GCCCACCGAATATGCTTGGTTCAGCATGTCAAAGAGATTGATGAGCATGC
TTGAAACTACCACTGACTATGCAAGGAAGAAAGCAACAACAATCTTCCAA
ATGCTTTTTAAATTAAGCAAGGAAAAGGAGAAGGATGATGACGAAAATAA
CAAAGTAGAGAGAACTGAAAAAGCTTCAGAAAAGGGACTTAatgaacaag
aagaaggagaatCAGAAACTGACACAGAATCGGAGGACTTGAATAATGAA
AGAATACATGATGAATTGCTAGAGAAGAATCCTAATGATGTAGAACATGT
TGATTCAACTGAGGATAGTGGTGAAGATGATGAGCATGGTGATTACTATA
GCACTAGTGAAGATGAAGATGCTGGAAACGAGGACAACGAAGACAGTGCT
GTACTAAAATACAATTTCAACGAAACCGTAAACGAGAAATTCATAGACAA
TAGTTCGAGCGCGACTGGTGTTGCTTTGAGTAATTGTAATGAAAATGCTA
CAGGGTTAAATGCGACAGCAAGTGCAGACGCAGCCGGTTTAACAATGGCC
AATCGCAACACTGATGCTAAAGGGTTTGATTTTAAGGCTTCTATAAATGC
TACTGGACTATCCGAAAGTGCTTTAAACGCTTCTTTTAAAGCAATGGATG
TTTCTGTCAATGCTTCGGTGTCAGCCTCAACTGTCACCGCTCGAAATGTA
TCCGCAAAAGGAGTTGAGCTTAAAGCAGAATCGACAAATACAGGAGCGAC
TGTAAATACAGGGAACTTTAATGTTAAAGGAGTTACTGCATCTGCTACAG
CTGATGTACATGGTATTAAAGCCAATGTCGGCAATGTTTCAATAACTGGC
CCATCGGCTAGTGCAACTGCGGATATTGGATACGGTGTAGAGATAGGAAA
CATCAATATCTCTGGTCCATCGGTAGGAGTTAGTTTCAGTACTAAgctca
aaattgacaatttcagTATTGG Run BLAST on NCBI protein sequence of TCONS_00062020-protein >TCONS_00062020-protein ID=TCONS_00062020-protein|Name=TCONS_00062020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MSKRLMSMLETTTDYARKKATTIFQMLFKLSKEKEKDDDENNKVERTEKA
SEKGLNEQEEGESETDTESEDLNNERIHDELLEKNPNDVEHVDSTEDSGE
DDEHGDYYSTSEDEDAGNEDNEDSAVLKYNFNETVNEKFIDNSSSATGVA
LSNCNENATGLNATASADAAGLTMANRNTDAKGFDFKASINATGLSESAL
NASFKAMDVSVNASVSASTVTARNVSAKGVELKAESTNTGATVNTGNFNV
KGVTASATADVHGIKANVGNVSITGPSASATADIGYGVEIGNINISGPSV
GVSFSTKLKIDNFSI Run BLAST on NCBI transcript from alignment at scaffold_361:818919..820483- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062020 ID=TCONS_00062020|Name=TCONS_00062020|organism=Clytia hemisphaerica|type=transcript|length=1565bp|location=Sequence derived from alignment at scaffold_361:818919..820483- (Clytia hemisphaerica)
CTTTGAAGGCTTCGAATGGTTATGACAAAAGTGATAGTTGCAGAAATCAA
AGGTGAGTCTTCTCTGAATATTATTTGAAAGAATATTACCTCTGTTGCAG
ATTATGAAGAAAAAGAGTTTTACGGAGAAGAGCATTTCAGTAAAAATGAT
TTTATTTTTTTTAAGTTCTTAATAATGCAAGGGTCAACTGGACACACCAT
TCCATGTCTCGTTTGTCGATCTATCATATAATCTTCTTTCTAAATGCTGC
GTTGTACATTTTATACGTTTATATCTTGTCATTTTCATCATCTAGTTACT
GGCTTTCAAAGTCGAGATGGAGCCCCAAACCAAAGAAGTCGAATACAGAA
TCCAAAAATCACTAAATTTCCAAACTGATCAACTGGAACTGTTAGCGAAA
GATGTTTGTGAAATCATCGATGAAATGTCTAAGAGAACTCGTAAAACGAT
GAAAAGTGCGAGATTACGCAACACCTTGAACCATTGGAAGAAGAGCCTGA
GTCTTGGAGGAAAATTGTTGCGGACGCCTTTAGGAAGATTTACGGTCCTA
GAGTCTCGTCCGTGTTAAGATGTCGTCAGTGGTACATCGAAGGGCCCACC
GAATATGCTTGGTTCAGCATGTCAAAGAGATTGATGAGCATGCTTGAAAC
TACCACTGACTATGCAAGGAAGAAAGCAACAACAATCTTCCAAATGCTTT
TTAAATTAAGCAAGGAAAAGGAGAAGGATGATGACGAAAATAACAAAGTA
GAGAGAACTGAAAAAGCTTCAGAAAAGGGACTTAATGAACAAGAAGAAGG
AGAATCAGAAACTGACACAGAATCGGAGGACTTGAATAATGAAAGAATAC
ATGATGAATTGCTAGAGAAGAATCCTAATGATGTAGAACATGTTGATTCA
ACTGAGGATAGTGGTGAAGATGATGAGCATGGTGATTACTATAGCACTAG
TGAAGATGAAGATGCTGGAAACGAGGACAACGAAGACAGTGCTGTACTAA
AATACAATTTCAACGAAACCGTAAACGAGAAATTCATAGACAATAGTTCG
AGCGCGACTGGTGTTGCTTTGAGTAATTGTAATGAAAATGCTACAGGGTT
AAATGCGACAGCAAGTGCAGACGCAGCCGGTTTAACAATGGCCAATCGCA
ACACTGATGCTAAAGGGTTTGATTTTAAGGCTTCTATAAATGCTACTGGA
CTATCCGAAAGTGCTTTAAACGCTTCTTTTAAAGCAATGGATGTTTCTGT
CAATGCTTCGGTGTCAGCCTCAACTGTCACCGCTCGAAATGTATCCGCAA
AAGGAGTTGAGCTTAAAGCAGAATCGACAAATACAGGAGCGACTGTAAAT
ACAGGGAACTTTAATGTTAAAGGAGTTACTGCATCTGCTACAGCTGATGT
ACATGGTATTAAAGCCAATGTCGGCAATGTTTCAATAACTGGCCCATCGG
CTAGTGCAACTGCGGATATTGGATACGGTGTAGAGATAGGAAACATCAAT
ATCTCTGGTCCATCGGTAGGAGTTAGTTTCAGTACTAAGCTCAAAATTGA
CAATTTCAGTATTGG Coding sequence (CDS) from alignment at scaffold_361:818919..820483- >TCONS_00062020 ID=TCONS_00062020|Name=TCONS_00062020|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_361:818919..820483- (Clytia hemisphaerica)
ATGTCAAAGAGATTGATGAGCATGCTTGAAACTACCACTGACTATGCAAG
GAAGAAAGCAACAACAATCTTCCAAATGCTTTTTAAATTAAGCAAGGAAA
AGGAGAAGGATGATGACGAAAATAACAAAGTAGAGAGAACTGAAAAAGCT
TCAGAAAAGGGACTTAATGAACAAGAAGAAGGAGAATCAGAAACTGACAC
AGAATCGGAGGACTTGAATAATGAAAGAATACATGATGAATTGCTAGAGA
AGAATCCTAATGATGTAGAACATGTTGATTCAACTGAGGATAGTGGTGAA
GATGATGAGCATGGTGATTACTATAGCACTAGTGAAGATGAAGATGCTGG
AAACGAGGACAACGAAGACAGTGCTGTACTAAAATACAATTTCAACGAAA
CCGTAAACGAGAAATTCATAGACAATAGTTCGAGCGCGACTGGTGTTGCT
TTGAGTAATTGTAATGAAAATGCTACAGGGTTAAATGCGACAGCAAGTGC
AGACGCAGCCGGTTTAACAATGGCCAATCGCAACACTGATGCTAAAGGGT
TTGATTTTAAGGCTTCTATAAATGCTACTGGACTATCCGAAAGTGCTTTA
AACGCTTCTTTTAAAGCAATGGATGTTTCTGTCAATGCTTCGGTGTCAGC
CTCAACTGTCACCGCTCGAAATGTATCCGCAAAAGGAGTTGAGCTTAAAG
CAGAATCGACAAATACAGGAGCGACTGTAAATACAGGGAACTTTAATGTT
AAAGGAGTTACTGCATCTGCTACAGCTGATGTACATGGTATTAAAGCCAA
TGTCGGCAATGTTTCAATAACTGGCCCATCGGCTAGTGCAACTGCGGATA
TTGGATACGGTGTAGAGATAGGAAACATCAATATCTCTGGTCCATCGGTA
GGAGTTAGTTTCAGTACTAAGCTCAAAATTGACAATTTCAGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062020-exon-scaffold_361-1575043694:820432..820483 | TCONS_00062020-exon-scaffold_361-1575043694:820432..820483 | Clytia hemisphaerica | exon |
| TCONS_00062020-exon-scaffold_361-1575043694:818919..820188 | TCONS_00062020-exon-scaffold_361-1575043694:818919..820188 | Clytia hemisphaerica | exon |
| TCONS_00062020-exon-scaffold_361-1510915933:820432..820483 | TCONS_00062020-exon-scaffold_361-1510915933:820432..820483 | Clytia hemisphaerica | exon |
| TCONS_00062020-exon-scaffold_361-1510915933:818919..820188 | TCONS_00062020-exon-scaffold_361-1510915933:818919..820188 | Clytia hemisphaerica | exon |
| TCONS_00062020-exon-scaffold_361-1491911889:820432..820483 | TCONS_00062020-exon-scaffold_361-1491911889:820432..820483 | Clytia hemisphaerica | exon |
| TCONS_00062020-exon-scaffold_361-1491911889:818919..820188 | TCONS_00062020-exon-scaffold_361-1491911889:818919..820188 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:818919..820483 - |
Blast
The following BLAST results are available for this feature:
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