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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062055 ID=TCONS_00062055|Name=TCONS_00062055|organism=Clytia hemisphaerica|type=transcript|length=3044bp CCCCCTTGTTGTGCACAGCTAAGTCCACGCATTCATTAACTCTATCCATA CGGATAGATTACAAGAATTCTGGTATCTTTTGATCAGTTATGCATCCCAA TTTATTGAATATCATGTAATTTTTAGCTCGTGGAAAGCATTCAAGCCGAA TGGATGATATGGGCTTAAAGTGTTGCACGGGAAATCAATATATCTCCCCC TGTTTCATTTACCATGTACGCGTTCATTTATATATGTCCTGATTTTCTGA TTCGAGGGCAGTATAGCATATAAGTGGCAGGGGGCAGTGGGCGGTTTTTT TGGGGGAGCCAAAATGCTAGTTTTTAGCCCTAAAAAATGGATTAAAAACA CCTCTAATATTGCTAGTAAAGGGGCGCTAAATTGCCAATTTTCCTATTTT GCCTCCCCAGTGTTTGCCAAGCCACCACGCTGCTGTTCGAGGGTACATGA TAATGAAACATAGAAAGACACCTGACGAATGATTCATCAAATTAGAAAAT TGcatcttaaaattaaaaagcgTCATTCAAACTTGTTAATTGCTCCATTG TATCTTTTATTGTTCAAAGAAaggaaaacaatcaaaacagaGAAGTCAGG ATGAATAAAGTTGAAAAGGGGAAAACGTGACAATTCTTCTTTGACAATCA GGATGCATGCTTTCTATAAAAAGGAATCCGTTCGAATGGGTCAACTTTTT TGCCACAGAAACGGATCACTTACAACTTATATCTAATCTCAAGATAATTG TAACATAGAACAAATAAATCACAACTCCTTGGATGAACATCTTTTGGATG TCAATTACGTACCGTTAAAAAGTGCAAAGTGACTCAGACAGATGACCTCA CCGTGACATTGCAGatgttaattttcatttttcatttttcattgttcATA ATTGGCTTCTCATCGCGAGATTTGGTTTCTAAGAAGATTTCCGGTCTATA TTGTACACCTTTCACAAAACAAAAGGTTATGATGCGGGTCATGATGTGGG GGCTACGTGTGTTGGCTGACAACAAGATAGTATAAATAGTGTTTTCCCTC GTATATCATAATCAATAGACAACACAGTGCGAGGAACGACTCATCTGAAT ATTGATTTGTAACGGTGAGATCTAATCTTgggaacttttcatttttaaaa gttcTAAAGGATTAGATTTGCCTGTTATAAAACTTATCATCACATCGTAA AACTCAAACGACTCACATCTGACTGGCAAGAGAACTAGACTTAAAATCAA GATGGCGGAAAGTGTAACGGCTACTACTCCTTctactcaaaatgaaaata tcggagtcaaaaattcaaaagaagaaCCACAACAACAGactaaCATTAAG ATCCCTGCTGAACCAAAGAAAACTGTCTCGTTAGATTTCATCCTTCAAGA GATCGGAGAGTTTGGTCGTTTCCAATGGCTACTAGAGTTCTTATTCGCCA TCATGCTTATACAGCCTGTCTCGCAAATCTTCGTCATCGTTTTTGTGACG TCCGACACGCACTTAAGATGTCGTGAAAACAGCTCTGTATGTCGGATGAA CGGAACCTTTTCCAGTAAAGATGAACATCATTGCAAATTGGCAAGATCTG AATGGGAATTTGTTGAATCTAAAGATCATTCATTTATCACGCAATTCGAT ATATATTGCAAACGTAAATGGGTCGTGCAGCTGGCTtcatcaattttctt tctcggTTGGGCANGAACGTAAATGGGTCGTGCAGTTGGCTTcgtcaatt ttctttctcgGTTGGGCAATGGGTTCCATTTTATTGGGATGGGCAGCAGA TCGATATGGGCGAAAAACTGTCCTCTTCCCTTCACTACTCGCGTGTATGG TTTTAAGTGCAATTTCACCGTTCTTACCATCGCTGTCTGTCTTCGTGGTG GTTCGCTTCCTGATCGGTATGTGCATCCCTGGCACTTCCTTACAAATGTT TATCATCATGTCTGAAGTCGTTGGTGAAAGACATCGCTTGAAATCTGGCC TCATCATATGGTTCGCTAATGCATTGGCTGTTTGTCTTATTGGTGTTAAA GCATATTTTATTCGTGATTGGAAAATATTATACTTGGTGTGCACCGCACC TTACGTGGTGACTTTGTTGTTTTACAAAATGGTTCCCGAGTCTCCACAGT GGCTAATTCTGAAGAAACGACAATCCGAAGCACTTATCATCTTCAAGAAA ATCGCTAAATTCAACGGCAAGCAATTAGACGATAAATTTTCTATCgaaga gaagaaagaaaatggGAAGACGTCGAAAGTGCGTTTCATGACAGCAGATA TTCTTCATAAAACAGCAATTCAAGGTTTCGGATGGATGGTCAGCGGTATG CTATTCTTTGGTTTATCACTCTCCGTTGGCCAGCTGGGTGGTTCGGCTCA CATTAACTTTATTCTGGTATCGTTAGTCGAGATACCTGCTCTATTTATCG CTATCTTTCTTGGAGAGAAGATCGGTCGCAAGAGAATTGTCTTGATACCC TTATTCATTGGAGGGATAGCTTGTGGACTGATCTCTCTTTTTCAACATGA AATTTGCGTCTTCCCAGCTGGCAGTATCTCCATAACACTTGGTAAAATCA TCCTTGCGTTGATCGGAAAGTTATTCGTCACTATCACATTCGATTCATTT TACACGTGGTCGGCTGAACTTTACCCGACAGAATTACGCGGAAAGGGGAT GGGATTGTGCCAAGTTTCTAGTCTATTAGGAGCGACTATTTCACCTTGGT TGGTGAACGGGTTCAAGCTTTTACACGTTTCCTCACCGTTCATCGTGTTG TGTGGTTTTGCTGTGACCTCCACTATCGCATTGACATTTCTTCCCGAAac tcaaaatcaaattaaaaagacATTGGTTATTGAGAATCTCAATACAacag gagaaaaaaagaaaaatattgacgaAAAGGTGTAAAACGCCTtgaaaagt tattttaaaagatgcatttcttaaaatatttattgtatTTATGTAATTTA TCAAATTATTTATCAAATGATTAAAGATCGAAGGTATGAATTTG Run BLAST on NCBI protein sequence of TCONS_00062055-protein >TCONS_00062055-protein ID=TCONS_00062055-protein|Name=TCONS_00062055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MNIIANWQDLNGNLLNLKIIHLSRNSIYIANVNGSCSWLHQFSFSVGXER KWVVQLASSIFFLGWAMGSILLGWAADRYGRKTVLFPSLLACMVLSAISP FLPSLSVFVVVRFLIGMCIPGTSLQMFIIMSEVVGERHRLKSGLIIWFAN ALAVCLIGVKAYFIRDWKILYLVCTAPYVVTLLFYKMVPESPQWLILKKR QSEALIIFKKIAKFNGKQLDDKFSIEEKKENGKTSKVRFMTADILHKTAI QGFGWMVSGMLFFGLSLSVGQLGGSAHINFILVSLVEIPALFIAIFLGEK IGRKRIVLIPLFIGGIACGLISLFQHEICVFPAGSISITLGKIILALIGK LFVTITFDSFYTWSAELYPTELRGKGMGLCQVSSLLGATISPWLVNGFKL LHVSSPFIVLCGFAVTSTIALTFLPETQNQIKKTLVIENLNTTGEKKKNI DEKV Run BLAST on NCBI transcript from alignment at scaffold_361:1449085..1452869- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062055 ID=TCONS_00062055|Name=TCONS_00062055|organism=Clytia hemisphaerica|type=transcript|length=3785bp|location=Sequence derived from alignment at scaffold_361:1449085..1452869- (Clytia hemisphaerica) CCCCCTTGTTGTGCACAGCTAAGTCCACGCATTCATTAACTCTATCCATA
CGGATAGATTACAAGAATTCTGGTATCTTTTGATCAGTTATGCATCCCAA
TTTATTGAATATCATGTAATTTTTAGCTCGTGGAAAGCATTCAAGCCGAA
TGGATGATATGGGCTTAAAGTGTTGCACGGGAAATCAATATATCTCCCCC
TGTTTCATTTACCATGTACGCGTTCATTTATATATGTCCTGATTTTCTGA
TTCGAGGGCAGTATAGCATATAAGTGGCAGGGGGCAGTGGGCGGTTTTTT
TGGGGGAGCCAAAATGCTAGTTTTTAGCCCTAAAAAATGGATTAAAAACA
CCTCTAATATTGCTAGTAAAGGGGCGCTAAATTGCCAATTTTCCTATTTT
GCCTCCCCAGTGTTTGCCAAGCCACCACGCTGCTGTTCGAGGGTACATGA
TAATGAAACATAGAAAGACACCTGACGAATGATTCATCAAATTAGAAAAT
TGCATCTTAAAATTAAAAAGCGTCATTCAAACTTGTTAATTGCTCCATTG
TATCTTTTATTGTTCAAAGAAAGGAAAACAATCAAAACAGAGAAGTCAGG
ATGAATAAAGTTGAAAAGGGGAAAACGTGACAATTCTTCTTTGACAATCA
GGATGCATGCTTTCTATAAAAAGGAATCCGTTCGAATGGGTCAACTTTTT
TGCCACAGAAACGGATCACTTACAACTTATATCTAATCTCAAGATAATTG
TAACATAGAACAAATAAATCACAACTCCTTGGATGAACATCTTTTGGATG
TCAATTACGTACCGTTAAAAAGTGCAAAGTGACTCAGACAGATGACCTCA
CCGTGACATTGCAGATGTTAATTTTCATTTTTCATTTTTCATTGTTCATA
ATTGGCTTCTCATCGCGAGATTTGGTTTCTAAGAAGATTTCCGGTCTATA
TTGTACACCTTTCACAAAACAAAAGGTTATGATGCGGGTCATGATGTGGG
GGCTACGTGTGTTGGCTGACAACAAGATAGTATAAATAGTGTTTTCCCTC
GTATATCATAATCAATAGACAACACAGTGCGAGGAACGACTCATCTGAAT
ATTGATTTGTAACGGTGAGATCTAATCTTGGGAACTTTTCATTTTTAAAA
GTTCTAAAGGATTAGATTTGCCTGTTATAAAACTTATCATCACATCGTAA
AACTCAAACGACTCACATCTGACTGGCAAGAGAACTAGACTTAAAATCAA
GATGGCGGAAAGTGTAACGGCTACTACTCCTTCTACTCAAAATGAAAATA
TCGGAGTCAAAAATTCAAAAGAAGAACCACAACAACAGGTATTAATTTAT
TCAGATTTAAGAATCAAGACAATGTCCATAAACACCTTGTTGTGTTTTAA
GCTCAATGTTTTGTTTGCAAGCTGTTGTGTTTTTGGTCGAAGGTTATTTC
GGAAGAATATATTAATTGTTATAGTTTTTTGAGAGATTGTTGGCCCGGAA
GAAAGAGTGTGTGATATATGGACTAACCATAATCGCCATAGAAACTAAAA
CATCGACAGGTCACATTCTCGAAAAAAAGTATTTTTGGCGTCACAAAGCA
ACGTATATAAAAGAGACATTCGGTGAAAAACAGACCAGTTGCAAACGAAA
CATCGAGAAACTCAGGGTTGACAGTTATAGTTCCCTGCCAAAAAAAATCA
CTCACAACGCTCATTGTTTCATGCTTCTCAAAGTAACAAAACAATAATAT
CAAACAACAAAACACGTTTACCTTGCTAATGCAACTAATTCTAACAAAAA
AATACAAACATATCAAAAGCACAGAAAATTACACGACCTCAAGATTCTTT
CATCACTGTCCAATGAGATCACGTACCCATTGCACCTCAAATAAAGCTCT
TACTTATAATGACTCATAAACCTGTCCTGATGATTTTTGGATTATTTAAG
AAAGGCTAACAAAAGTCAACCCTGAAAATACAAAGGTAATAAATATTTAG
AATTCTAGATCTAGATGCCTCGAGAATCTTTTAACTGGTTGTAGCACTAA
TCTATTAATTATAATCATTTATTTTTCAGACTAACATTAAGATCCCTGCT
GAACCAAAGAAAACTGTCTCGTTAGATTTCATCCTTCAAGAGATCGGAGA
GTTTGGTCGTTTCCAATGGCTACTAGAGTTCTTATTCGCCATCATGCTTA
TACAGCCTGTCTCGCAAATCTTCGTCATCGTTTTTGTGACGTCCGACACG
CACTTAAGATGTCGTGAAAACAGCTCTGTATGTCGGATGAACGGAACCTT
TTCCAGTAAAGATGAACATCATTGCAAATTGGCAAGATCTGAATGGGAAT
TTGTTGAATCTAAAGATCATTCATTTATCACGCAATTCGATATATATTGC
AAACGTAAATGGGTCGTGCAGCTGGCTTCATCAATTTTCTTTCTCGGTTG
GGCANGAACGTAAATGGGTCGTGCAGTTGGCTTCGTCAATTTTCTTTCTC
GGTTGGGCAATGGGTTCCATTTTATTGGGATGGGCAGCAGATCGATATGG
GCGAAAAACTGTCCTCTTCCCTTCACTACTCGCGTGTATGGTTTTAAGTG
CAATTTCACCGTTCTTACCATCGCTGTCTGTCTTCGTGGTGGTTCGCTTC
CTGATCGGTATGTGCATCCCTGGCACTTCCTTACAAATGTTTATCATCAT
GTCTGAAGTCGTTGGTGAAAGACATCGCTTGAAATCTGGCCTCATCATAT
GGTTCGCTAATGCATTGGCTGTTTGTCTTATTGGTGTTAAAGCATATTTT
ATTCGTGATTGGAAAATATTATACTTGGTGTGCACCGCACCTTACGTGGT
GACTTTGTTGTTTTACAAAATGGTTCCCGAGTCTCCACAGTGGCTAATTC
TGAAGAAACGACAATCCGAAGCACTTATCATCTTCAAGAAAATCGCTAAA
TTCAACGGCAAGCAATTAGACGATAAATTTTCTATCGAAGAGAAGAAAGA
AAATGGGAAGACGTCGAAAGTGCGTTTCATGACAGCAGATATTCTTCATA
AAACAGCAATTCAAGGTTTCGGATGGATGGTCAGCGGTATGCTATTCTTT
GGTTTATCACTCTCCGTTGGCCAGCTGGGTGGTTCGGCTCACATTAACTT
TATTCTGGTATCGTTAGTCGAGATACCTGCTCTATTTATCGCTATCTTTC
TTGGAGAGAAGATCGGTCGCAAGAGAATTGTCTTGATACCCTTATTCATT
GGAGGGATAGCTTGTGGACTGATCTCTCTTTTTCAACATGAAATTTGCGT
CTTCCCAGCTGGCAGTATCTCCATAACACTTGGTAAAATCATCCTTGCGT
TGATCGGAAAGTTATTCGTCACTATCACATTCGATTCATTTTACACGTGG
TCGGCTGAACTTTACCCGACAGAATTACGCGGAAAGGGGATGGGATTGTG
CCAAGTTTCTAGTCTATTAGGAGCGACTATTTCACCTTGGTTGGTGAACG
GGTTCAAGCTTTTACACGTTTCCTCACCGTTCATCGTGTTGTGTGGTTTT
GCTGTGACCTCCACTATCGCATTGACATTTCTTCCCGAAACTCAAAATCA
AATTAAAAAGACATTGGTTATTGAGAATCTCAATACAACAGGAGAAAAAA
AGAAAAATATTGACGAAAAGGTGTAAAACGCCTTGAAAAGTTATTTTAAA
AGATGCATTTCTTAAAATATTTATTGTATTTATGTAATTTATCAAATTAT
TTATCAAATGATTAAAGATCGAAGGTATGAATTTG Coding sequence (CDS) from alignment at scaffold_361:1449085..1452869- >TCONS_00062055 ID=TCONS_00062055|Name=TCONS_00062055|organism=Clytia hemisphaerica|type=CDS|length=1365bp|location=Sequence derived from alignment at scaffold_361:1449085..1452869- (Clytia hemisphaerica) ATGAACATCATTGCAAATTGGCAAGATCTGAATGGGAATTTGTTGAATCT AAAGATCATTCATTTATCACGCAATTCGATATATATTGCAAACGTAAATG GGTCGTGCAGCTGGCTTCATCAATTTTCTTTCTCGGTTGGGCANGAACGT AAATGGGTCGTGCAGTTGGCTTCGTCAATTTTCTTTCTCGGTTGGGCAAT GGGTTCCATTTTATTGGGATGGGCAGCAGATCGATATGGGCGAAAAACTG TCCTCTTCCCTTCACTACTCGCGTGTATGGTTTTAAGTGCAATTTCACCG TTCTTACCATCGCTGTCTGTCTTCGTGGTGGTTCGCTTCCTGATCGGTAT GTGCATCCCTGGCACTTCCTTACAAATGTTTATCATCATGTCTGAAGTCG TTGGTGAAAGACATCGCTTGAAATCTGGCCTCATCATATGGTTCGCTAAT GCATTGGCTGTTTGTCTTATTGGTGTTAAAGCATATTTTATTCGTGATTG GAAAATATTATACTTGGTGTGCACCGCACCTTACGTGGTGACTTTGTTGT TTTACAAAATGGTTCCCGAGTCTCCACAGTGGCTAATTCTGAAGAAACGA CAATCCGAAGCACTTATCATCTTCAAGAAAATCGCTAAATTCAACGGCAA GCAATTAGACGATAAATTTTCTATCGAAGAGAAGAAAGAAAATGGGAAGA CGTCGAAAGTGCGTTTCATGACAGCAGATATTCTTCATAAAACAGCAATT CAAGGTTTCGGATGGATGGTCAGCGGTATGCTATTCTTTGGTTTATCACT CTCCGTTGGCCAGCTGGGTGGTTCGGCTCACATTAACTTTATTCTGGTAT CGTTAGTCGAGATACCTGCTCTATTTATCGCTATCTTTCTTGGAGAGAAG ATCGGTCGCAAGAGAATTGTCTTGATACCCTTATTCATTGGAGGGATAGC TTGTGGACTGATCTCTCTTTTTCAACATGAAATTTGCGTCTTCCCAGCTG GCAGTATCTCCATAACACTTGGTAAAATCATCCTTGCGTTGATCGGAAAG TTATTCGTCACTATCACATTCGATTCATTTTACACGTGGTCGGCTGAACT TTACCCGACAGAATTACGCGGAAAGGGGATGGGATTGTGCCAAGTTTCTA GTCTATTAGGAGCGACTATTTCACCTTGGTTGGTGAACGGGTTCAAGCTT TTACACGTTTCCTCACCGTTCATCGTGTTGTGTGGTTTTGCTGTGACCTC CACTATCGCATTGACATTTCTTCCCGAAACTCAAAATCAAATTAAAAAGA CATTGGTTATTGAGAATCTCAATACAACAGGAGAAAAAAAGAAAAATATT GACGAAAAGGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062055-exon-scaffold_361-1575043694:1451532..1452869 | TCONS_00062055-exon-scaffold_361-1575043694:1451532..1452869 | Clytia hemisphaerica | exon |
TCONS_00062055-exon-scaffold_361-1575043694:1449085..1450790 | TCONS_00062055-exon-scaffold_361-1575043694:1449085..1450790 | Clytia hemisphaerica | exon |
TCONS_00062055-exon-scaffold_361-1510915933:1451532..1452869 | TCONS_00062055-exon-scaffold_361-1510915933:1451532..1452869 | Clytia hemisphaerica | exon |
TCONS_00062055-exon-scaffold_361-1510915933:1449085..1450790 | TCONS_00062055-exon-scaffold_361-1510915933:1449085..1450790 | Clytia hemisphaerica | exon |
TCONS_00062055-exon-scaffold_361-1491911889:1451532..1452869 | TCONS_00062055-exon-scaffold_361-1491911889:1451532..1452869 | Clytia hemisphaerica | exon |
TCONS_00062055-exon-scaffold_361-1491911889:1449085..1450790 | TCONS_00062055-exon-scaffold_361-1491911889:1449085..1450790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_361 | supercontig | scaffold_361:1449085..1452869 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0022857 | transmembrane transporter activity |
GO:0005215 | transporter activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0055085 | transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055085 |
transmembrane transport |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0022857 |
transmembrane transporter activity |
molecular_function |
GO:0005215 |
transporter activity |
Blast
BLAST of TCONS_00062055 vs. Swiss-Prot (Human)
Match: S22A3 (Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 2.229e-43 Identity = 126/397 (31.74%), Postives = 207/397 (52.14%), Query Frame = 2
Query: 1724 WVVQLASSIFFLGWAMGSILLGWAADRYGRKTVLFPSLLACMVLSAISPFLPSLSVFVVVRFLIGMCIPGTSLQMFIIMSEVVGERHRLKSGLIIWFANALAVCLIGVKAYFIRDWKILYLVCTAPYVVTLLFYKMVPESPQWLILKKRQSEALIIFKKIAKFNGKQLDDKFSIEEKKENGKTSKVRFM----TADILHKTAIQGFGWMVSGMXXXXXXXXXXXXXXXAHINFILVSLVEIPALFIAIFLGEKIGRKRIVLIPLFIGGIACGLISLFQHEICVFPAGSISXXXXXXXXXXXXXXFVTITFDSFYTWSAELYPTELRGKGMGLCQVSSLLGATISPWLVNGFKLLHVSSPFIV------LCGFAV-----TSTIALTFLPETQNQIKK 2869
W++ L +I LG+ G+ LG+AADRYGR + S L V + F P+ VFV+ RFL G+ GT + ++I++E+VG + R G++I L + ++ AYFI +W+ + L T P + LL+Y +VPESP+WLI +K+ +AL I ++IAK NGK L +S E + + S F+ T + T I F W S +++ GL + +G +GG+ +I+F + +VE+P + + E++GR+ + G+AC L++ F E + +++ +T+ F+ Y ++ELYPT LR G+ LC G I+P+L+ + + P I+ +CG V T IA LPET + ++K
Sbjct: 152 WMLDLTQAILNLGFLTGAFTLGYAADRYGRIVIYLLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGTWMTCYVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFIPNWQGIQLAITLPSFLFLLYYWVVPESPRWLITRKKGDKALQILRRIAKCNGKYLSSNYS-EITVTDEEVSNPSFLDLVRTPQMRKCTLILMFAWFTSAVVYQGLVMRLGIIGGNLYIDFFISGVVELPGALLILLTIERLGRRLPFAASNIVAGVAC-LVTAFLPEGIAWLRTTVATLGRLG---------ITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFLLFRLAAVWLELPLIIFGILASICGGLVMLLPETKGIA---LPETVDDVEK 534
The following BLAST results are available for this feature:
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