TCONS_00062066 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062066
Unique Name	TCONS_00062066
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1752

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_361:1565496..1571106-

transcript sequence

>TCONS_00062066 ID=TCONS_00062066|Name=TCONS_00062066|organism=Clytia hemisphaerica|type=transcript|length=1752bp
CTGATCACCAACCTAGCAATGGTTTCTATGGGAGTGGAACTCACAGAACG
GCCAGATCTTCTGATCTTTTTGGTTGATGATCTTGGATATGGAGATGTTG
GATTCAATAAGGAAGGTGACTCGGATGGTTCAGGAGAAAGCCCGACCCCG
AACATGGAcgctttttccaaaaaaggaatTCGTTTTACAGACTACCATTC
ACCATATGCCGTGTGCACACCAAGTCGTGCTTCTTTGCTGACTTCAAGAC
TGGGTGCAAGAACGGGTCTCTACAGTCTTTTGAATGCGAAGAGCATTGGA
GGACTGCCAACCACGGAATACACTCTCTCTGAACACTTGAAGAAGATTGA
TTACTCAACGTTCGCTATCGGGAAGTGGCATCTGGGACATCAAGACAACT
ACCATCCAAATGATCGAGGCTTTGACCATTACCTTGGTGTACCATACAGT
CTAGATATGGGATGTCTCGATTATCCAGGTTATTCACATCACTGACGAAG
TTGCTATTCCCCTGTATCGAGATAAAACTATTATTCAGCAACCTTTAGAT
TTGAGAACTCTTTCGGATATTTACTTCCAAGAATTTCAACAAAGAATGGA
AGAAATTCATCAAAAGAAAACTAATTTCTTTGGTTACATCCCCTTCTCAA
AGGTACACGTACCACTTGGCTTTGCTGAACACTCTCCAAACGGCACTGCT
TTTTCGGACAATTTGAAGGAATTGGACATGAATTTCGGACGGATGATTCA
AACAGTGAAGGATTTGGGATTGTTTGAGAATACAGTGATATGGTTGATCA
GTGATAACGGCCCTTGGGAACTAGAATGTCAATTTGCAGGGCAACCTGGA
AAATTTCAAGGATtatggcaaaaaatgaaaactggaGGTGGCGGAGGTAC
CAGTTGGAAAGAAACCATCTGGGAAGGAGGACATCGCGTGCCAGCAGTCG
TTACATGGCCACAATACATCAAAGAGGGGAGGGTATCTGACGCCTTGATC
AGTGGTTTAGATATCATGCCCACAATGGCAAGTTTGATGGGGTTTGAATT
ACCAACTGATAGACATTACGATGGAGAGGACTTGTCTCGTGTTTTGAAAG
ATGGATCGGATGAAGGGCGACTGACGCTTTTCCATCCGCGTTCGAACGCA
AGGGATAACGAGATCACTGCCGTCCGGTGGAAAAATTATAAAGCTGTCTT
CAAGTCCGGTGGTTTGAGGCTTCTTGATTGTCACTTCGGATCATCGATGG
CCAGGACGTACGATCCGCCATTATTGTTTGATCTGAAGGACGACCCTTCA
GAAGCAAAACCTTTGGATACAACCGACCCCTTCAATAAAGCATTAGTCAG
TCACTTGAAAGACTTATTAGAGAAATTGAATGAAGATATTGCTGGTGATT
TTAAAAGCAAGTTTGATGATCGGCAAGACTCATCAGTGATGCCGTGTTGT
AACGCACGAAATAGACATTGCCGGTGTCAACCTCTGATTGGTTCAGatta
atgaaataaaaatgtaaataaaaaatgagaaacattATAATAAAGGTCCT
TGGAGAAAGTttactaaaaatgaaaacatactTCATTTATGTTTTATATA
CCAGTGGatactactttaatgggataaattttcgtggggattaattttcg
cggatttcgcggatttgggtgtcatccgcgaaaataagtcccattggaaa
tttgaaaaaggcccatccgcgaaaattagtttccgcgaaaaatttgaatt
tt

Run BLAST on NCBI

transcript from alignment at scaffold_361:1565496..1571106-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062066 ID=TCONS_00062066|Name=TCONS_00062066|organism=Clytia hemisphaerica|type=transcript|length=5611bp|location=Sequence derived from alignment at scaffold_361:1565496..1571106- (Clytia hemisphaerica)
CTGATCACCAACCTAGCAATGGTTTCTATGGGAGTGGAACTCACAGAACG
GCCAGATCTTCTGATCTTTTTGGTTGATGATCTTGGATATGGAGATGTTG
GATTCAATAAGGAAGGTGACTCGGGTAAGAAAACGAATAGACTAGCAAGC
CAGTCGGAATAGAACGATATCAGGCGGGAAAGGTGAAGCTAGGTAAGCGT
AAGAAATTGTCGGCTCTCTCGCTAACTTCTCTTCGTTCTCCTTATGTTAT
TCTAAGCAGCTCCCTTCCTGGCAAACGCACAACGCCGTTATTTCCGCCCT
TTGACATGATTGATTAGTAGACTAATTTGCTAGTCTAAGTATATAATTCT
AGGGTGTGGTTGCCAGAGTAATGCAAGGAGCCACAGGGAACAACCGAAAA
GACCTCGGGGTAACAAGCGAGCTTACGGAGAATAAAAATACTACATTATT
ATTTCAGATGGTTCAGGAGAAAGCCCGACCCCGAACATGGACGCTTTTTC
CAAAAAAGGAATTCGTTTTACAGACTACCATTCACCATATGCCGTGTGCA
CACCAAGTCGTGCTTCTTTGCTGACTTCAAGACTGGGTGCAAGAACGGGT
CTCTACAGGTAGGTATTGGTGAAACACAATCTCCATCTCTGTAGCTTATT
TACATATGAAGTCTCTTTAAGTTAAACCTCTATAACATAAATGTCTTCTG
GTAATTAAAACAGTGAGTATCGAATTATCCATTCGTACTGGAAATCTGAT
CCCTAAAGAGTGGTAACGGATATTAATTCTTTCTTTAGTCTTTTGAATGC
GAAGAGCATTGGAGGACTGCCAACCACGGAATACACTCTCTCTGAACACT
TGAAGAAGATTGATTACTCAACGTTCGCTATCGGGAAGTGGCATCTGGGA
CATCAAGACAACTACCATCCAAATGATCGAGGCTTTGACCATTACCTTGG
TGTACCATACAGTCTAGATATGGGATGTCTCGATTATCCAGGTTATTCAC
ATCCAAAACATTTGAGTTGCAAGCGAGACATCACNGTACCATACAGTCTA
GATATGGGATGTCTCGATTATCCAGGTTATTCACATCCAGAACATTTGAG
TTGCAAGCGAGACATCACTGACGAAGTTGCTATTCCCCTGTATCGAGATA
AAACTATTATTCAGCAACCTTTAGATTTGAGAACTCTTTCGGATATTTAC
TTCCAAGAATTTCAACAAAGAATGGAAGAAATTCATCAAAAGAAAACTAA
TTTCTTTGGTTACATCCCCTTCTCAAAGGTGCCGCGTCATTTTCTTCTCA
GAGTTGTCGTTCAAATTTATTCGATTTTCACGTTGACCTTCATTTACCCT
GGACCAAGCGTTTTCCACTCTATTTGATCGAATTTTATGTTTAGTGAATT
TTAGTGCTAGTATTAGGGTACAGTTTTCAAAAAACTCCGATCAAAGATAT
TGCATGGCCGGGGTGAGAAACTTTGTCCAGAGTATAGATCAGTGGATCAG
TGGGTTTTAACATGTCGCCTCATTTAACGTCAAACTTTATTATTGGTAGC
GAGAAATAATATGGTTTGAAATGATGTTTCGGGTCCTACAGATCACAAAA
TATGATGGAAACCTTGATTTTTACAATTGAGGCTTGAAAATGAAAGTAAA
GAAAGCTTAATGTTTGAGGAAAGTCATAACCTTATCCAATACGCGCACAA
ACTACTCTGTTTATAGGTACACGTACCACTTGGCTTTGCTGAACACTCTC
CAAACGGCACTGCTTTTTCGGACAATTTGAAGGAATTGGACATGAATTTC
GGACGGATGATTCAAACAGTGAAGGATTTGGGATTGTTTGAGAATACAGT
GATATGGTTGATCAGTGATAACGGCCCTTGGGAACTAGAATGTCAATTTG
CAGGTATTTGCATTTTCGTGTTTTTCTTGTTAGCCAATGTTCTTTATTTG
CATTCTTGAAAATACATAGCTATTATTTCTGTATTTCAGGGCAACCTGGA
AAATTTCAAGGATTATGGCAAAAAATGAAAACTGGAGGTAGGAAAGCTTC
ACTCGAGCACCTTTGAGCATCATTCTTAGCATTTCTGGTTACTTTTTTCA
GAGAGCATTTAATATGTTACTGTTACACTGCTATGGTAACAATGAATAGT
TTCCTGAATTCTATCGCTTTGCAAATCAATACAAAATATCCATCCAAGCT
TTTTATTGTAACATACCACTGTTTGACCAATCCCGTAGCTGCTTGCACCA
CTACTTAATACTATTGAAAGCAGTACAATCACGAACGCTATTAGAACCAT
AAAGAACGAACTAAGGGTCCGTGACCGACTTTGCCGTTTAAGGTCATTTT
AATTATTAGGTGGCGGAGGTACCAGTTGGAAAGAAACCATCTGGGAAGGA
GGACATCGCGTGCCAGCAGTCGTTACATGGCCACAATACATCAAAGAGGG
GAGGGTATCTGACGCCTTGATCAGTGGTTTAGATATCATGCCCACAATGG
CAAGTTTGATGGGGTTTGAATTACCAACTGATAGACATTACGATGGAGAG
GACTTGTCTCGTGTTTTGAAAGATGGATCGGATGAAGGGCGACTGGTAGG
TCATTAGGCTGCACACATCCCCTCTGATAAGTTTTGATATAGAACTAATT
TGGGGATGCATGCAGCCTAGTAGGTCATATCACTTCCCTGTCCCTACTGA
TATATTACTCAGAGCCAATATCCAATCATAATCGCTAGTCATGGTATCTA
TTTGTTTTAGAAGATTTTCGATAACTCCTGTCAGTTTGGTGTTGTATACA
AGTCGTGCCTTTTCTAATCCCAGCTTTCCTCTGCAAAATAAAGGGTAGAT
TGAAAAATACTTCCTTCCATTTAACAAACATCTCAGCTAATTTTTAGCAT
TTTTTATACATGCGTAGCTAATGAGCAGAACATTTATAATTATTAAAAGG
TTTTGTGAAGGGATGAAGCTAGATGTTTGATAAGATAAGAATAATTGATC
GTTAATTTAATGACAGTTGGATGATAATCTTTCAGACAGAGAGAATCATG
CTGTTAAACACGTGATTGGTACAGTTTTCACATCTCTCCACTTCTTTCTC
TCTTTTTAGACGCTTTTCCATCCGCGTTCGAACGCAAGGGATAACGAGAT
CACTGCCGTCCGGTGGAAAAATTATAAAGCTGTCTTCAAGTCCGGTAAGT
TTCCCTCGTTGTATTTCCTGCCTTGTGCGTTCAATATCCAAGGGGATGGA
TAATTGCCACTTAACGTAAGCTTTAACATCCCCTTTATATCCCTTTTAGT
GGTCAAGTGTGAGTTGTGACCAAGCATTTTCATCTAACAGTTCCAAGAAC
TATTCCATAATATTTTGATAACTGAATAAAGATTCGCTATTCAAAAATTG
ATTTTGGTATTTGAACATAAAAGTTATATCTCAGGTTCCTTAACACTTTA
ACAAAGAATTGCCTTTTATAAATTGCTTTTTAATCAAATCCCTTAAGAGT
AATTAAGAATTTAATTGCAAAAATGACGTTATGAACTTTAAAAAGATGTT
AATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCTTTACTCTGTC
CGCAAAGAATTGAACTATTTTAAATTTTGCGGAAAATTTTTGTAAAAAGA
TGTGTCAAAAGTTATGACTGTTTTTTAAGCAAAATCCAGGTGAAAAATTG
ATGAAAAACCACTATTTTGAAGATTTCGAGACAAAGAAGCATTTACAAAT
ATTTTGCGCAAAAATATTTATTGTTCGGTCAAGAATGTGTGCTGGAAATG
TGAGCCAGTGAAAATACAAAGTTGAAATTGAAGAAATTCTGATTATTGTC
ATTTGTCATTAGTCATATTGATGTTGACTCTCTCATAGTCAACTTGTGAC
TGAGTAGCGAGTGAGAAAAAGTTGGCCTTTTTTATAATAAATTTGAAAAA
AACAAAAAACTAGTTTGACAAGATATAAAAACAATGAATATGTAACACTC
TTGAGAAATCAAATGATAATTAAATAAAGATGCGTGTGAAATAATTAATT
ACTAGATAATGACTAAATGACAAAATGATAATAACTGACAAAGTATTTGA
AATAATTGATAACATAGATAAATGACTTTAAAACATAGAACAAAACAAAC
GACGCATGAAACACGAGAATGCACAAGAGAGAGACGCAAAGGACGCTGAA
AAAGAAAGCACTGGGAAAACAAAGGACGCTGGGGACAAAAAGACACTGAC
AAAAACAAGACACTGAAAATTGAACTATAAAATATTTTTGCTTTTTTAAA
TATACTAAAAATTTGATGAATCACATTACAAAGATGTTTTTTCTTCACCG
AAACTAAGCTCTTCAAAGTTGAAATACTCTTCCTCGCAAAAGTCTCCATT
TTCTTCTTCATCAAATTTTTTTCAATGCAATTTTTGAATTTTCAGATTAA
GGAATAGTTTGTCTAACAGAAAATGTATAACATGCCATAGTTTTGTTGGT
TACATCAGTCAGAAAACACATTTTAAACACGGCAATTATGAAAAATTCAC
TATGGTCAGAGCCCACAAAAACTGATTCTAAATTCTTTTCGGGGAAAGCT
TTCGAGAAAAAAACTGATCAAAAGCTTGCCAAAATATTCTCAGAATAACA
TTTATCTTGATTCATATTTTTGAAAGGAGAAAGGAGAAATCAAATGAAAC
TAACATAGAAATGAGTATTTAAGAGACTCAACAGGGCCCACGCCATGAAA
TTGAGAAAGAGAGAGGAGAAATGGCCTTTGTGTGGGAGGGGGGCAATGAA
TATAGAGTCTAAGGTGGCGCAACCAAAAATTTTACTTTTCAAAAAAGTGG
TGCCCTGTTGAATCTCTTTACTTTCAATAAAACAACTTTAATTTTTATCA
AAGTGTATTTTCTACAGGTGGTTTGAGGCTTCTTGATTGTCACTTCGGAT
CATCGATGGCCAGGACGTACGATCCGCCATTATTGTTTGATCTGAAGGAC
GACCCTTCAGAAGCAAAACCTTTGGATACAACCGACCCCTTCAATAAAGC
ATTAGTCAGTCACTTGAAAGACTTATTAGAGAAATTGAATGAAGATATTG
CTGGTGATTTTAAAAGCAAGTTTGATGATCGGCAAGACTCATCAGTGATG
CCGTGTTGTAACGCACGAAATAGACATTGCCGGTGTCAACCTCTGATTGG
TTCAGATTAATGAAATAAAAATGTAAATAAAAAATGAGAAACATTATAAT
AAAGGTCCTTGGAGAAAGTTTACTAAAAATGAAAACATACTTCATTTATG
TTTTATATACCAGTGGATACTACTTTAATGGGATAAATTTTCGTGGGGAT
TAATTTTCGCGGATTTCGCGGATTTGGGTGTCATCCGCGAAAATAAGTCC
CATTGGAAATTTGAAAAAGGCCCATCCGCGAAAATTAGTTTCCGCGAAAA
ATTTGAATTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038898	XLOC_038898	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_361	supercontig	scaffold_361:1565496..1571106 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.840954	0.66886	0	1.26547e-07	1.41733e-06	3.12472e-07	7.89138e-07	1.42738e-07	0.679436	1.39148	6.97302e-07	0.590345	0.000137721	0.400625	0	1.48341e-08	2.86528	2.44295	0.154772	3.76456	0.484107	4.77011	0.000995049	2.74743	0	0	7.14902	6.90092	0.0260701	7.05203

Blast

[Close]

BLAST of TCONS_00062066 vs. Swiss-Prot (Human)
Match: ARSG (Arylsulfatase G OS=Homo sapiens GN=ARSG PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 9.164e-96
Identity = 125/333 (37.54%), Postives = 181/333 (54.35%), Query Frame = 2

Query:  497 EVAIPLYRDKTIIQQPLDLRTLSDIYFQEFQQRMEEIHQKKTNFFGYIPFSKVHVPLGFAE--HSPNG-TAFSDNLKELDMNFGRMIQTVKDLGLFENTVIWLISDNGPWELECQFAGQPGKFQGLWQKMKTGGGGGTSWKETIWEGGHRVPAVVTWPQYIKEGRVSDALISGLDIMPTMASLMGFELPTDRHYDGEDLSRVLKDGSDEGRLTLFHPRSNARD--NEITAVRWKNYKAVFKSGGLRLLDCHFGSSMARTYXXXXXXXXXXXXSEAKPLDTTDPFNKALVSHLKDLLEKLNEDIAGDFKSKFDDRQDSSVMPCCNARNRHCRCQ 1480
            +VA+PLY +  I++QP++L +L+  Y ++  Q ++        F  Y+  + +HVPL   +   +P G + +   L E+D   G++   V D  + ENT +W   DNGPW  +C+ AG  G F G WQ  +    GG+  K+T WEGGHRVPA+  WP  +     S AL+S LDI PT+ +L    LP  R +DG D+S VL   S  G   LFHP S A      +  VR + YKA + +GG R  D   G  +   +  PL+F+L+DD +EA PL+      +A++  ++ +L  + +DIA D  S  D  QD SV PCCN     CRCQ
Sbjct:  198 DVALPLYENLNIVEQPVNLSSLAQKYAEKATQFIQRASTSGRPFLLYVALAHMHVPLPVTQLPAAPRGRSLYGAGLWEMDSLVGQIKDKV-DHTVKENTFLWFTGDNGPWAQKCELAGSVGPFTGFWQTRQ----GGSPAKQTTWEGGHRVPALAYWPGRVPVNVTSTALLSVLDIFPTVVALAQASLPQGRRFDGVDVSEVLFGRSQPGHRVLFHPNSGAAGEFGALQTVRLERYKAFYITGGARACDGSTGPELQHKF--PLIFNLEDDTAEAVPLERGGAEYQAVLPEVRKVLADVLQDIANDNISSADYTQDPSVTPCCNPYQIACRCQ 523

HSP 2 Score: 162.54 bits (410), Expect = 9.164e-96
Identity = 75/148 (50.68%), Postives = 99/148 (66.89%), Query Frame = 1

Query:   46 ERPDLLIFLVDDLGYGDVGFNKEGDSDGSGESPTPNMDAFSKKGIRFTDYHSPYAVCTPSRASLLTSRLGARTGLYSLLNAKSIGGLPTTEYTLSEHLKKIDYSTFAIGKWHLGHQDNYHPNDRGFDHYLGVPYSLDMGCLDYPGYSH 489
            ++P+ +I L DD+G+GD+G N     D      T N+D  + +G+RF D+H+  + C+PSRASLLT RLG R G+       S+GGLP  E TL+E L++  Y T  IGKWHLGH  +YHPN RGFD+Y G+PYS DMGC D PGY+H
Sbjct:   34 QKPNFVIILADDMGWGDLGANWAETKD------TANLDKMASEGMRFVDFHAAASTCSPSRASLLTGRLGLRNGVTRNFAVTSVGGLPLNETTLAEVLQQAGYVTGIIGKWHLGHHGSYHPNFRGFDYYFGIPYSHDMGCTDTPGYNH 175

The following BLAST results are available for this feature:

BLAST of TCONS_00062066 vs. Swiss-Prot (Human)

BLAST of TCONS_00062066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARSG	9.164e-96	37.54	Arylsulfatase G OS=Homo sapiens GN=ARSG PE=1 SV=1	[more]

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TCONS_00062066 (transcript) - C. hemisphaerica