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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062096 ID=TCONS_00062096|Name=TCONS_00062096|organism=Clytia hemisphaerica|type=transcript|length=1009bp
ATGTCGATTGAACGGGTTTCCCAAGGGGTTTCCTCCCAATCTATTTTTAG
GAATAGCATTACAAAGTCTTCTTTTTAAGAAGATGGCATTCCATTGCAGT
TTACCGTTTCACAGTTGCTCCATCGACCTCTACGCAATCAGTACCTCTTT
TTGTTAATGCTGAAATGGTTTTCTCTGACGACGAAAAGGCTGTCATAAAA
AATGACTATCTTGAGAAACAATGGAGCGCTTATCGTATCTGTAAGGAACA
TCCTACAAAGAAATGGCATAAAACGTCTGTACAGAATTTAATCAATCGTT
TCAAAGTGTTTGGATCTATGGACAGAAGACCTGGATCAGGCAGACCAAGA
ACCGTGACAACACCAGATAACGAAGCTTTGGTTAACGAGTTGATATGTTC
ACAGGAAGAAAAACCGGGTACGCATTTGTCACCTCGGGAAATAGAGAAAC
ACACGGGAATAAAGAGATCTTCGGTAATAcgaatggtaaaaaggaatggC
TATAAGCAATACAAACGTTTAAAAACACCACGAGTAAATGCCGCGACAAA
GCAACGACGAACAGAGAGAGCTGCAGCGCTCGCAGAAAGATTTGGAAAGA
GCAAAAGGAGCATCGAACGTTGTGTGTGGCAAGATGAAAAGGACTTTACA
CTGGAAGTGCCGTTCAATAGCCAAAATAGCCGCGTTTACAGCAAAGGCCA
GAAAGGTGATGTTCCTGATGCAAGCTTGTTTCATCAGAAGAACAAACAAA
GCAAAAAAGTCATGGTATCCGCCTGCATTTCATGGTACGGTGcaacaaaa
ccttttttcgtGAGTGGTGATGGAGTAAAGGTGAATGCCGTTTCGTATCA
CAAGCATTTAGATAAACAACTGATACCGGAAATTAATAAATTGGTTAGTA
GAAAAGATTGGGTTTACATACAAGATAGCGCACCGTCACACAGATCAAAT
CTTGTCCAAGACTATCTGAAGGAGAAATTGAGAAAACGCTTTGTCAAGTT
AGGTGAGTG Run BLAST on NCBI protein sequence of TCONS_00062096-protein >TCONS_00062096-protein ID=TCONS_00062096-protein|Name=TCONS_00062096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MVFSDDEKAVIKNDYLEKQWSAYRICKEHPTKKWHKTSVQNLINRFKVFG
SMDRRPGSGRPRTVTTPDNEALVNELICSQEEKPGTHLSPREIEKHTGIK
RSSVIRMVKRNGYKQYKRLKTPRVNAATKQRRTERAAALAERFGKSKRSI
ERCVWQDEKDFTLEVPFNSQNSRVYSKGQKGDVPDASLFHQKNKQSKKVM
VSACISWYGATKPFFVSGDGVKVNAVSYHKHLDKQLIPEINKLVSRKDWV
YIQDSAPSHRSNLVQDYLKEKLRKRFVKLGE Run BLAST on NCBI transcript from alignment at scaffold_361:285239..286247 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062096 ID=TCONS_00062096|Name=TCONS_00062096|organism=Clytia hemisphaerica|type=transcript|length=1009bp|location=Sequence derived from alignment at scaffold_361:285239..286247 (Clytia hemisphaerica)
CACTCACCTAACTTGACAAAGCGTTTTCTCAATTTCTCCTTCAGATAGTC
TTGGACAAGATTTGATCTGTGTGACGGTGCGCTATCTTGTATGTAAACCC
AATCTTTTCTACTAACCAATTTATTAATTTCCGGTATCAGTTGTTTATCT
AAATGCTTGTGATACGAAACGGCATTCACCTTTACTCCATCACCACTCac
gaaaaaaggttttgttgCACCGTACCATGAAATGCAGGCGGATACCATGA
CTTTTTTGCTTTGTTTGTTCTTCTGATGAAACAAGCTTGCATCAGGAACA
TCACCTTTCTGGCCTTTGCTGTAAACGCGGCTATTTTGGCTATTGAACGG
CACTTCCAGTGTAAAGTCCTTTTCATCTTGCCACACACAACGTTCGATGC
TCCTTTTGCTCTTTCCAAATCTTTCTGCGAGCGCTGCAGCTCTCTCTGTT
CGTCGTTGCTTTGTCGCGGCATTTACTCGTGGTGTTTTTAAACGTTTGTA
TTGCTTATAGccattcctttttaccattcgTATTACCGAAGATCTCTTTA
TTCCCGTGTGTTTCTCTATTTCCCGAGGTGACAAATGCGTACCCGGTTTT
TCTTCCTGTGAACATATCAACTCGTTAACCAAAGCTTCGTTATCTGGTGT
TGTCACGGTTCTTGGTCTGCCTGATCCAGGTCTTCTGTCCATAGATCCAA
ACACTTTGAAACGATTGATTAAATTCTGTACAGACGTTTTATGCCATTTC
TTTGTAGGATGTTCCTTACAGATACGATAAGCGCTCCATTGTTTCTCAAG
ATAGTCATTTTTTATGACAGCCTTTTCGTCGTCAGAGAAAACCATTTCAG
CATTAACAAAAAGAGGTACTGATTGCGTAGAGGTCGATGGAGCAACTGTG
AAACGGTAAACTGCAATGGAATGCCATCTTCTTAAAAAGAAGACTTTGTA
ATGCTATTCCTAAAAATAGATTGGGAGGAAACCCCTTGGGAAACCCGTTC
AATCGACAT Coding sequence (CDS) from alignment at scaffold_361:285239..286247 >TCONS_00062096 ID=TCONS_00062096|Name=TCONS_00062096|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_361:285239..286247 (Clytia hemisphaerica)
CTCACCTAACTTGACAAAGCGTTTTCTCAATTTCTCCTTCAGATAGTCTT
GGACAAGATTTGATCTGTGTGACGGTGCGCTATCTTGTATGTAAACCCAA
TCTTTTCTACTAACCAATTTATTAATTTCCGGTATCAGTTGTTTATCTAA
ATGCTTGTGATACGAAACGGCATTCACCTTTACTCCATCACCACTCacga
aaaaaggttttgttgCACCGTACCATGAAATGCAGGCGGATACCATGACT
TTTTTGCTTTGTTTGTTCTTCTGATGAAACAAGCTTGCATCAGGAACATC
ACCTTTCTGGCCTTTGCTGTAAACGCGGCTATTTTGGCTATTGAACGGCA
CTTCCAGTGTAAAGTCCTTTTCATCTTGCCACACACAACGTTCGATGCTC
CTTTTGCTCTTTCCAAATCTTTCTGCGAGCGCTGCAGCTCTCTCTGTTCG
TCGTTGCTTTGTCGCGGCATTTACTCGTGGTGTTTTTAAACGTTTGTATT
GCTTATAGccattcctttttaccattcgTATTACCGAAGATCTCTTTATT
CCCGTGTGTTTCTCTATTTCCCGAGGTGACAAATGCGTACCCGGTTTTTC
TTCCTGTGAACATATCAACTCGTTAACCAAAGCTTCGTTATCTGGTGTTG
TCACGGTTCTTGGTCTGCCTGATCCAGGTCTTCTGTCCATAGATCCAAAC
ACTTTGAAACGATTGATTAAATTCTGTACAGACGTTTTATGCCATTTCTT
TGTAGGATGTTCCTTACAGATACGATAAGCGCTCCATTGTTTCTCAAGAT
AGTCATTTTTTATGACAGCCTTTTCGTCGTCAGAGAAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062096-exon-scaffold_361-1491911889:285239..286247 | TCONS_00062096-exon-scaffold_361-1491911889:285239..286247 | Clytia hemisphaerica | exon |
| TCONS_00062096-exon-scaffold_361-1510915933:285239..286247 | TCONS_00062096-exon-scaffold_361-1510915933:285239..286247 | Clytia hemisphaerica | exon |
| TCONS_00062096-exon-scaffold_361-1575043694:285239..286247 | TCONS_00062096-exon-scaffold_361-1575043694:285239..286247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:285239..286247 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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