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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062146 ID=TCONS_00062146|Name=TCONS_00062146|organism=Clytia hemisphaerica|type=transcript|length=991bp
CTTTAATACAGGCCCCATTCAACTTAACTTTGTGGCAGAGTATCCATCCT
GCCAATATGAGGATCTGACTTAAAGGGATTGACATGTGGTCGGTTGAAAG
AGAAAGATGATATTCACTCATTTCATTTCTGCACTACTATTGGCCTCACA
ACTCTCATCATTCTTGCATCCATCTTCAATTTCCCTGCTGCTTTCTTCGT
CGCTGCTCTTTACGTCCCTGTTATCATGACCTTTGATAGTCAGAAATGGT
TGGTCAAATTTATACACCTCATCACTTTGATTTTATCAATGCCACCTTTA
TTCCTACTTGTAACTTCATCTTTTGCTCATCTGGATCAAATGCAAGAAAA
ACCTGCCAACGTACAAAAACTCTATGAACTTTCTTTAAATGATTGGTCAT
GGCAAATGAGCCTTATTCAAGATTATGATGGCATCGGGTTATGGACttgg
aaagtcttttttatagCTTTGCTACCTATATGGCTTATGTTGACGTCAGC
ACATGTTTGATAAGAATTTTAGGGGAATTCGAAATAATTTTAATAGGATT
TTAACCAATCTTACCGTTATCAACAGCAACGTGACTGAATTTTCTTTATA
CATTGTATCCAGTCTCCAGCCATCCAGTCTCCAAACCTTTTTGGATTCAG
TAGCTTAGACAAGAGGGACGCAACAGTGTAGGAGAGGAGATTGGGCAATT
CCATTTTAAAttcatacaggggggtggacgaacatttccagagggtaatc
tgagaagaatttccagggggtgtttttccatttttccaagggggtaaaaa
gctattctaaaatttccaggggataaaagattgattttagttcgtccatc
ctcactttaaggtatgaaaaaaacttttcccagggtaatttttggaattt
tacaattttccagggggtatccacgcattttcaataattattttttgatt
tgaaaaggtTTGTATACCCCcttatggttttttaatggaac Run BLAST on NCBI transcript from alignment at scaffold_362:259..2465+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062146 ID=TCONS_00062146|Name=TCONS_00062146|organism=Clytia hemisphaerica|type=transcript|length=2207bp|location=Sequence derived from alignment at scaffold_362:259..2465+ (Clytia hemisphaerica)
CTTTAATACAGGCCCCATTCAACTTAACTTTGTGGCAGAGTATCCATCCT
GCCAATATGAGGATCTGACTTAAAGGGGTATGGCGAATATGAGGATTTTA
ACTGGTTTTTAGCCAAAACAATCAATTCTGCTTTGCATTTTTTCTTAACG
AAAGTAACTGTTTTTATGTTTGTTTCTGTTTATGACTGACTTTTGATTCT
GATGCAGTTTGGTTCAATTTTTCTGCTTTAGCCAATCATCGCGCTCAAAA
ACTTATTTAAAATTCATCCCAAATTTGGATCAAAAAGATCAGAGCGATGC
GTCAAATGCGTAAATTCTCTTAAGAAGCCATGGCCTTTATAGAGTATATA
CGTGCCAGCGTGGAGTAATCAGAATCTGCTAGGAGATTACATGCAATTAA
TAATTTTGTTTATAGATTGACATGTGGTCGGTTGAAAGAGAAAGATGATA
TTCACTCATTTCATTTCTGCACTACTATTGGCCTCACAACTCTCATCATT
CTTGCATCCATCTTCAATTTCCCTGCTGCTTTCTTCGTCGCTGCTCTTTA
CGTCCCTGTTATCATGACCTTTGATAGTCAGAAATGGTAAGAATGAATTT
TTTACACTAGTGCACACTTTTCGAGACGTAACCTCGTCCACGTGTATact
aggctttatttacgtcaCTGAAGGACACCTTNCTAGTGCACACTTTTCGA
GACGTAACCTCGTCCACGTGTAAactaggctttatttacgtcaCTGAAGG
ACACCTTTAACAGCACGGTCGGCTTTTGAGGAGTATAGGCcctttcacag
tcgaaatggataatgggtaatcaggactgattgcgcctcccaTACCGGCT
Tcctgttggctagacgcaataagcttaaaaaaatttcaaaactttggacc
aataagTAAGTCGTCATTTGCGCGCAgaggtcctgattacccattacgct
ttgcgacttcGAAATAGCCTATGTTAATGGATTTGCAAATAATTACGTCA
AAGGTCTTTGTTTTATGAGaatgtcaatgcaatgacttaaGACAATTTGA
CTTCATTCTTCCTGGTAAACTTGAACCCAGTCTCCTAACGCTTTAAAGGT
CGATAGGATTATACCCTGGTGTCGTTTGATGTGAGCCCCCTCTCAGAGAT
TTGATGTTATCAAGATTGACTCCAATCAGTGGTTTCAAACCCAGGAACAA
ATgagatttgttgttttttttaattacataATCTTTTGCAtttgaaaagc
tgaaaatgTCCGGGTAACATCTGGTGCCGGGAAAACAAGGGAAACATAGA
AAGACATTCCAGGtcctattttttataaaattcttCAACTTTCAGACCGT
TTGGAAACGTGTACTACCACAAGTCTTGTAATTAAACATATAAAGAAATA
CAGActtttgaggctaaaaataattgatttttcatttatttttttttttc
ttctcttttttaagGTTGGTCAAATTTATACACCTCATCACTTTGATTTT
ATCAATGCCACCTTTATTCCTACTTGTAACTTCATCTTTTGCTCATCTGG
ATCAAATGCAAGAAAAACCTGCCAACGTACAAAAACTCTATGAACTTTCT
TTAAATGATTGGTCATGGCAAATGAGCCTTATTCAAGATTATGATGGCAT
CGGGTTATGGACttggaaagtcttttttatagCTTTGCTACCTATATGGC
TTATGTTGACGTCAGCACATGTTTGATAAGAATTTTAGGGGAATTCGAAA
TAATTTTAATAGGATTTTAACCAATCTTACCGTTATCAACAGCAACGTGA
CTGAATTTTCTTTATACATTGTATCCAGTCTCCAGCCATCCAGTCTCCAA
ACCTTTTTGGATTCAGTAGCTTAGACAAGAGGGACGCAACAGTGTAGGAG
AGGAGATTGGGCAATTCCATTTTAAAttcatacaggggggtggacgaaca
tttccagagggtaatctgagaagaatttccagggggtgtttttccatttt
tccaagggggtaaaaagctattctaaaatttccaggggataaaagattga
ttttagttcgtccatcctcactttaaggtatgaaaaaaacttttcccagg
gtaatttttggaattttacaattttccagggggtatccacgcattttcaa
taattattttttgatttgaaaaggtTTGTATACCCCcttatggtttttta
atggaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062146-exon-scaffold_362-1491911889:259..335 | TCONS_00062146-exon-scaffold_362-1491911889:259..335 | Clytia hemisphaerica | exon |
| TCONS_00062146-exon-scaffold_362-1510915933:259..335 | TCONS_00062146-exon-scaffold_362-1510915933:259..335 | Clytia hemisphaerica | exon |
| TCONS_00062146-exon-scaffold_362-1575043694:259..335 | TCONS_00062146-exon-scaffold_362-1575043694:259..335 | Clytia hemisphaerica | exon |
| TCONS_00062146-exon-scaffold_362-1491911889:674..844 | TCONS_00062146-exon-scaffold_362-1491911889:674..844 | Clytia hemisphaerica | exon |
| TCONS_00062146-exon-scaffold_362-1510915933:674..844 | TCONS_00062146-exon-scaffold_362-1510915933:674..844 | Clytia hemisphaerica | exon |
| TCONS_00062146-exon-scaffold_362-1575043694:674..844 | TCONS_00062146-exon-scaffold_362-1575043694:674..844 | Clytia hemisphaerica | exon |
| TCONS_00062146-exon-scaffold_362-1491911889:1723..2465 | TCONS_00062146-exon-scaffold_362-1491911889:1723..2465 | Clytia hemisphaerica | exon |
| TCONS_00062146-exon-scaffold_362-1510915933:1723..2465 | TCONS_00062146-exon-scaffold_362-1510915933:1723..2465 | Clytia hemisphaerica | exon |
| TCONS_00062146-exon-scaffold_362-1575043694:1723..2465 | TCONS_00062146-exon-scaffold_362-1575043694:1723..2465 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:259..2465 + |
Blast
The following BLAST results are available for this feature:
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