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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062158 ID=TCONS_00062158|Name=TCONS_00062158|organism=Clytia hemisphaerica|type=transcript|length=4563bpRun BLAST on NCBI protein sequence of TCONS_00062158-protein >TCONS_00062158-protein ID=TCONS_00062158-protein|Name=TCONS_00062158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1074bp MAASSHSPHKETDKLLALKKRKYNDQTLSKPTDANQWIENNIKVFQSAGVRun BLAST on NCBI transcript from alignment at scaffold_362:95036..114876+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062158 ID=TCONS_00062158|Name=TCONS_00062158|organism=Clytia hemisphaerica|type=transcript|length=19841bp|location=Sequence derived from alignment at scaffold_362:95036..114876+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_362:95036..114876+ >TCONS_00062158 ID=TCONS_00062158|Name=TCONS_00062158|organism=Clytia hemisphaerica|type=CDS|length=51600bp|location=Sequence derived from alignment at scaffold_362:95036..114876+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062158 vs. Swiss-Prot (Human)
Match: TRPM1 (Transient receptor potential cation channel subfamily M member 1 OS=Homo sapiens GN=TRPM1 PE=1 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 1.894e-35 Identity = 165/616 (26.79%), Postives = 289/616 (46.92%), Query Frame = 3
Query: 1641 VDDKTIN----PLNEVFLWAVVNGYHKIAMWLWDKSDNSFERVLIAEEIYHKCYRRSTKVNIVL-LPQFYYQCYEEFRDLAVNFLEVSYDMNIEDSLKLLCKPSQVFEQGGGLQTTPLDIASSIRWPSFIGHQSVQRLLTEVWTGS--MPYNIAFWQIFLSFIFPPYLLWVTFREDVTIRNYVREMGRHNRD-----------YIDGTSTK-------TKPPSLSFGKKLLLFYTAPVTKFFINLATFIIFLVFVSIDAIENRTGAFDVDEWVTMVFFISFLTYEIRKV-ASVDMSAKRRIKKHFGDFWHIMDLFVFSSYAISITLRALHYDKNNFFMS-------ITAFLSILRILKAFYGFSRLGPYIFMISRMFKEXXXXXXXXXXXXXSYGVGMTSVLLPQRVSS-KTFKDVLLYPFLNALG-----NIDFTYDQKEANQTSFNTYKYNDY-------GEYVGWAFMIIYXXXXXXXXXXXXXXXFGSVYEEVKDDSKNVWSFQRFQIVEEYVRRSRIPNPFSFFSDMYHLILWMVGKCCSGRK--RRSLTIGTAVMSVSKDTKELIFFERKVAQR--VRKEYEASLTKEEQ----SLLLERMMKQIEELKD 3326
VDD ++ P +E+ +WAV+ K+A++LW + + S + L+A ++Y S++ ++V + Q ++F LA+ L+ SY + + ++KLL +E +T L +A + + FI H Q LLT++W G M N ++ + + PP +L++ FR T ++ + + N D D S K K S+ G K+ FY AP+ KF+ +++ +L+ + + G + EW+ + + +S +IR++ S ++IK ++W+I DL S++ I LR +N +M + +R+L F LGPY+ MI +M +M+ F+V++ V ++S+GV ++L P+ S K +++ P+ G ID Y + N Y G ++ A M YLLVANILL+NLLIAVF + + EVK S VW FQR+Q++ + R +P P S +Y +I+ + G+C R+ + G + ++ K L FE + Q KE E + +E+ S +E M ++EE+ +
Sbjct: 600 VDDPAVSRFQYPFHELMVWAVLMKRQKMAVFLWQRGEESMAKALVACKLYKAMAHESSESDLVDDISQDLDNNSKDFGQLALELLDQSYKHDEQIAMKLL-----TYELKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNPGL-KVIMGILLPPTILFLEFR---TYDDFSYQTSKENEDGKEKEEENTDANADAGSRKGDEENEHKKQRSIPIGTKICEFYNAPIVKFWFYTISYLGYLLLFNYVILVRMDGWPSLQEWIVISYIVSLALEKIREILMSEPGKLSQKIKVWLQEYWNITDLVAISTFMIGAILRL----QNQPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPEEKPSWKLARNIFYMPYWMIYGEVFADQIDL-YAMEINPPCGENLYDEEGKRLPPCIPGAWLTPALMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSGRCRKKREGDQEERDRGLKLFLSDEELKRLHEFEEQCVQEHFREKEDEQQSSSDERIRVTSERVENMSMRLEEINE 1201 The following BLAST results are available for this feature:
BLAST of TCONS_00062158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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