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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062161 ID=TCONS_00062161|Name=TCONS_00062161|organism=Clytia hemisphaerica|type=transcript|length=2250bp
AAGGAGTATTGCTCAATATTCACCACAGAGGAAGAAGAGTCGCTAGTTCA
ATATATAAAGAACAAAAATAGGTAAGATTCAATATTGGCAATATTTCTTA
AAGCTTGGAAATAATTAAATGTAAAACGAAACGTCAACATACACTGGACT
TGGAAAGTTATCCCTTTTTCTCTTCATTTCTGCTGAATTAAGGAAAATCT
TTCCTAAGTTCCTGTAGTTCCTCTTCTTGTTCCAAGAAACATTGAAATCC
TCTATAATTAAACTTCATATATTTTAGATGCCTCCAAGGACTGAACAAAA
CAGAGTTGACAAGGACAATGCTCAATGTTCTGGAAGTAAGAAAGCATGCC
TACAAAAACCTTCGCGGACGTAACATCAAGAAACTATCCCCAAATGCACT
ACGAGCACTCACAACAAAAAAGCTTAGCAAATCTTTTTGGAGGCGTTGGG
ATTCAAAGTATCAAAAGCAGATCACAAAGAAAAGACAAGGGACTGTATCA
ATAAATCGAGCTTTAAATTGCACAAGAGAAATGGCTTGTAACCATTTGAA
TGAATTAGCTGAAGAGCTTATAAAAACTGATATTTTTGTTGATGCAGTCC
AATTAGAAACTGGTGTTTGGCAGGGGCATATTGATACAACAAGAGTTTTC
AATCATGATGAAACTCCCCAGTTTGTAAACTATGGAGTAGATGGTACTCC
AAATGGTTTAGCATATGCTGGGCGAGGGGAAAGCTGCCAGAAAATGATAA
GAGAAAATAGGGAGTGTGTAACTTTACACCCTTTCGTTTCTTTTGGAGGA
GAAATAGCTATGTGCCATATCATCTTCAAGGGGAAAGGTATTAGTGCCCA
TATGGCCCCAAAGGAAGCAGTCGAAAAGATTCCCAATCTTTTAATCTCCA
CAAATGACAGTGGCAGCCAAGATCACAGTACACTTCTGAGTGCTTATGAA
ATGTTTGACCACTATTTAGATGAGAATAGTATTCAACGACCTGTTGTTGT
TTTATCTGATGGTCATTCTTCACGATTTGACAGTGATGTATTGacatttt
taagaaacaaaaacattagACTTTTCATCAGCCCTCCTGATACAACTGGT
GTTACCCAGCTCCTTGATCAGATAAATCAAAAGTTGCACTCTGAGTACAG
AAGTGCTAAGTCTGAACTTTTCTCTCCATTTATGACAATCAACAGGGAAG
GTTTCATGAAGATACTTGCAGAGTTGTGGCCAGAGTGGGCATCAAATGAG
ACAATTACAAATGCAGGCAAAAAGGTTGGCATCTCATGCAAAGGCCTCAG
TGTTGAATGGATGCAAGCAGATAAGTTTGCAAGAGCCGAGCTGTGTATTA
CCAAAAATACTGAACAACCTTCATCTTCTTCAGTAACCATTTCATCTCCA
AAACAAGTTCGTTATGACTCTGCAGCCTATTGGAAGCATAAATATCATGG
TGCCATGGAAGCTTATCAAACAATATCTGAAAAAGCATTATCACTAGAGG
AAATTCCTAATTTGCTACCTGTGACCAAAGTAACACCAAAACCCAACAAA
GAAAATGTGAGTTACCCAGGTTCAGGGCTCAATGGAGGGGAAAGAAATAT
TAGAAAAAGTTTCAGAAATCAAGGAAGCTAAAGCCAAAAAGGAGCAATTA
AAGAAAGATAAGAAATCTAATCAACAGCAGCAAATTGAATCTTTCTTTAA
GTGTAAGGATCAATGTACATGTGGTAAGAATATTTGTGCTGCAAGTAAGC
TTCGAGAATGCCCATGTTGTCATAATGTTTTAAAATCTATATGCAGTAAA
CTTTCATGCAGAGATGAATCAGGCTCAAAACCAATAATGATCAAGCCAAT
TTGTGATAATGGTTCAAAGAAAAGCCTTCATTTTGAATcagatgatgaaa
atgacatcGGAATTGAAGACAACTTGACTGATGTAGATGATGACGATATG
AGTGGCTCTGAAAAGGTGGTTGATAATGCGGATCATGATTCAAGCAGTGA
TGAGCAGCAAGTTGGTTTAAAACGAGGCGATTGTGTCAAGGTAGTTAAGG
GGAATTATCTTGGATATTTTGCATTGGTAACTGGCGATGGATACGGCGGA
GAGACAGAACTTAACTATTTTGAGCATAGAAGTAAATGGTGGGTCCTAAA
AGAAAAGGATTTAGATTCACGAGAGAGAGGAGACCTTGAAAAGGTGGAGA
ACTTTACAATGGACAACAGATCACATTATTATTTCAAGTAGGCTTTCCTT Run BLAST on NCBI transcript from alignment at scaffold_362:134655..136904+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062161 ID=TCONS_00062161|Name=TCONS_00062161|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at scaffold_362:134655..136904+ (Clytia hemisphaerica)
AAGGAGTATTGCTCAATATTCACCACAGAGGAAGAAGAGTCGCTAGTTCA
ATATATAAAGAACAAAAATAGGTAAGATTCAATATTGGCAATATTTCTTA
AAGCTTGGAAATAATTAAATGTAAAACGAAACGTCAACATACACTGGACT
TGGAAAGTTATCCCTTTTTCTCTTCATTTCTGCTGAATTAAGGAAAATCT
TTCCTAAGTTCCTGTAGTTCCTCTTCTTGTTCCAAGAAACATTGAAATCC
TCTATAATTAAACTTCATATATTTTAGATGCCTCCAAGGACTGAACAAAA
CAGAGTTGACAAGGACAATGCTCAATGTTCTGGAAGTAAGAAAGCATGCC
TACAAAAACCTTCGCGGACGTAACATCAAGAAACTATCCCCAAATGCACT
ACGAGCACTCACAACAAAAAAGCTTAGCAAATCTTTTTGGAGGCGTTGGG
ATTCAAAGTATCAAAAGCAGATCACAAAGAAAAGACAAGGGACTGTATCA
ATAAATCGAGCTTTAAATTGCACAAGAGAAATGGCTTGTAACCATTTGAA
TGAATTAGCTGAAGAGCTTATAAAAACTGATATTTTTGTTGATGCAGTCC
AATTAGAAACTGGTGTTTGGCAGGGGCATATTGATACAACAAGAGTTTTC
AATCATGATGAAACTCCCCAGTTTGTAAACTATGGAGTAGATGGTACTCC
AAATGGTTTAGCATATGCTGGGCGAGGGGAAAGCTGCCAGAAAATGATAA
GAGAAAATAGGGAGTGTGTAACTTTACACCCTTTCGTTTCTTTTGGAGGA
GAAATAGCTATGTGCCATATCATCTTCAAGGGGAAAGGTATTAGTGCCCA
TATGGCCCCAAAGGAAGCAGTCGAAAAGATTCCCAATCTTTTAATCTCCA
CAAATGACAGTGGCAGCCAAGATCACAGTACACTTCTGAGTGCTTATGAA
ATGTTTGACCACTATTTAGATGAGAATAGTATTCAACGACCTGTTGTTGT
TTTATCTGATGGTCATTCTTCACGATTTGACAGTGATGTATTGacatttt
taagaaacaaaaacattagACTTTTCATCAGCCCTCCTGATACAACTGGT
GTTACCCAGCTCCTTGATCAGATAAATCAAAAGTTGCACTCTGAGTACAG
AAGTGCTAAGTCTGAACTTTTCTCTCCATTTATGACAATCAACAGGGAAG
GTTTCATGAAGATACTTGCAGAGTTGTGGCCAGAGTGGGCATCAAATGAG
ACAATTACAAATGCAGGCAAAAAGGTTGGCATCTCATGCAAAGGCCTCAG
TGTTGAATGGATGCAAGCAGATAAGTTTGCAAGAGCCGAGCTGTGTATTA
CCAAAAATACTGAACAACCTTCATCTTCTTCAGTAACCATTTCATCTCCA
AAACAAGTTCGTTATGACTCTGCAGCCTATTGGAAGCATAAATATCATGG
TGCCATGGAAGCTTATCAAACAATATCTGAAAAAGCATTATCACTAGAGG
AAATTCCTAATTTGCTACCTGTGACCAAAGTAACACCAAAACCCAACAAA
GAAAATGTGAGTTACCCAGGTTCAGGGCTCAATGGAGGGGAAAGAAATAT
TAGAAAAAGTTTCAGAAATCAAGGAAGCTAAAGCCAAAAAGGAGCAATTA
AAGAAAGATAAGAAATCTAATCAACAGCAGCAAATTGAATCTTTCTTTAA
GTGTAAGGATCAATGTACATGTGGTAAGAATATTTGTGCTGCAAGTAAGC
TTCGAGAATGCCCATGTTGTCATAATGTTTTAAAATCTATATGCAGTAAA
CTTTCATGCAGAGATGAATCAGGCTCAAAACCAATAATGATCAAGCCAAT
TTGTGATAATGGTTCAAAGAAAAGCCTTCATTTTGAATcagatgatgaaa
atgacatcGGAATTGAAGACAACTTGACTGATGTAGATGATGACGATATG
AGTGGCTCTGAAAAGGTGGTTGATAATGCGGATCATGATTCAAGCAGTGA
TGAGCAGCAAGTTGGTTTAAAACGAGGCGATTGTGTCAAGGTAGTTAAGG
GGAATTATCTTGGATATTTTGCATTGGTAACTGGCGATGGATACGGCGGA
GAGACAGAACTTAACTATTTTGAGCATAGAAGTAAATGGTGGGTCCTAAA
AGAAAAGGATTTAGATTCACGAGAGAGAGGAGACCTTGAAAAGGTGGAGA
ACTTTACAATGGACAACAGATCACATTATTATTTCAAGTAGGCTTTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062161-exon-scaffold_362-1491911889:134655..136904 | TCONS_00062161-exon-scaffold_362-1491911889:134655..136904 | Clytia hemisphaerica | exon |
| TCONS_00062161-exon-scaffold_362-1510915933:134655..136904 | TCONS_00062161-exon-scaffold_362-1510915933:134655..136904 | Clytia hemisphaerica | exon |
| TCONS_00062161-exon-scaffold_362-1575043694:134655..136904 | TCONS_00062161-exon-scaffold_362-1575043694:134655..136904 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:134655..136904 + |
Blast
The following BLAST results are available for this feature:
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