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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062164 ID=TCONS_00062164|Name=TCONS_00062164|organism=Clytia hemisphaerica|type=transcript|length=3647bpRun BLAST on NCBI protein sequence of TCONS_00062164-protein >TCONS_00062164-protein ID=TCONS_00062164-protein|Name=TCONS_00062164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=735bp MAMSKFLHFGKLFSELAAQSTKVATGSRQRALHSLRKLYSSEPPKGFEKFRun BLAST on NCBI transcript from alignment at scaffold_362:141555..186615+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062164 ID=TCONS_00062164|Name=TCONS_00062164|organism=Clytia hemisphaerica|type=transcript|length=45061bp|location=Sequence derived from alignment at scaffold_362:141555..186615+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_362:141555..186615+ >TCONS_00062164 ID=TCONS_00062164|Name=TCONS_00062164|organism=Clytia hemisphaerica|type=CDS|length=35328bp|location=Sequence derived from alignment at scaffold_362:141555..186615+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062164 vs. Swiss-Prot (Human)
Match: AFG32 (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2) HSP 1 Score: 859.366 bits (2219), Expect = 0.000e+0 Identity = 460/741 (62.08%), Postives = 557/741 (75.17%), Query Frame = 2
Query: 215 TKVATGSRQRALHSLRKLY---SSEPPKGFEKFFP------------------------XXXXXXXXXXXXXXXXXXXXXXXEWWQ---------EEENKRLLIMTAS---GLLAMYLLSGSSSSMREINWQDFRINYLERGEVDHVVITNKSLAKVYL---KSDPANCHIFFNIGSVDSFEKNLYQTQEDLGIDPAFYIPVTYSKEVEWLSELIKTAPLLLILGGLFYFSRK--LXXXXXXXXXXXXXXXXQSTAKFFNKETGIKTKFRDVAGCEEAKVEIMEFVNFLKHPEKYLELGAKIPKGAIISGPPGTGKTLLAKATAGEAQVPFLSVSGSEFLEMFVGVGPARVRDMFAQARKQAPCIIFIDEIDAVGRARGKSGNFGGGYDERENTLNQLLVEMDGFSSTSNVVVLAGTNRPDVLDPALMRPGRFDRQIHLPPPDIKGRVSIFKVHLRPLKYE--LDENEVARKLSALTPGFTGADIANVCNEAALIAARHLSKLVEMKHFEAAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWFLENADPLLKVSIIPRGRGLGYAQYLPKEQYLYSTEQLFDRMCMTLGGRVAEEIFFGRITTGAQDDLNKITKSAYAQVVTYGMNDKVGQISFDLPREGEMAMDKPYSQATAQMIDEEVRSLVDVAYKSTHDLLTKHKEDIEKVAQLLLEKEVLNRQDMIDLLGPRPFAEKSTYEDFVAGTGSEEEDTTMPEGLK 2299
T A SR L + Y S PPKGFEK+FP +T G G GG K WW ++++ R+ + + G + YLL S REI W+DF NYL +G VD + + NK +V K+ +++FNIGSVD+FE+NL Q++LGI+ +PV Y E + S L+ P +LI+ L Y R+ +G GG+F VG++TAK E I KF+DVAGCEEAK+EIMEFVNFLK+P++Y +LGAKIPKGAI++GPPGTGKTLLAKATAGEA VPF++VSGSEFLEMFVGVGPARVRD+FA ARK APCI+FIDEIDAVGR RG+ GNFGG E+ENTLNQLLVEMDGF++T+NVV+LAGTNRPD+LDPAL+RPGRFDRQI + PPDIKGR SIFKVHLRPLK + L+++++ARKL++LTPGF+GAD+ANVCNEAALIAARHLS + KHFE AIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGW+LE+ADPLLKVSIIPRG+GLGYAQYLPKEQYLY+ EQL DRMCMTLGGRV+EEIFFGRITTGAQDDL K+T+SAYAQ+V +GMN+KVGQISFDLPR+G+M ++KPYS+ATA++ID+EVR L++ AYK T LLT+ K D+EKVA LLLEKEVL++ DM++LLGPRPFAEKSTYE+FV GTGS +EDT++PEGLK
Sbjct: 44 TTQARASRNSLLTDIIAAYQRFCSRPPKGFEKYFPNGKNGKKASEPKEVMGEKKESKPAATTRSSGGGGGGGGKRGGKKDDSHWWSRFQKGDIPWDDKDFRMFFLWTALFWGGVMFYLLLKRSG--REITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQELGIEGENRVPVVYIAESDG-SFLLSMLPTVLIIAFLLYTIRRGPAGIGRTGRGMGGLFSVGETTAKVLKDE--IDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGR-GNFGG-QSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELLGPRPFAEKSTYEEFVEGTGSLDEDTSLPEGLK 777 The following BLAST results are available for this feature:
BLAST of TCONS_00062164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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