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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062169 ID=TCONS_00062169|Name=TCONS_00062169|organism=Clytia hemisphaerica|type=transcript|length=2195bp
AAATTTCTTTAGATAAAATCCAAGACAGAGTGATGTCAAACCACGAGGGT
TGTAATCGAACTCGGTCCCATGCTTCTGACAAACGGGTAATCTGAATCGA
CACCACTTAGTAATTGTAACCTTTTTTTCTCATAAATATTATTTGTTATG
TAAAGacttaatttgttttttgtaaCGCTGACGGGCGAATATTTCTTGGT
ACGGTAGTTATTCATTTCTTGGATAATCGGAAGAGCATGATAAAAGAACT
CATCAGGAATCTCGGAAAGTAAAAATACCAGCCTGAGATATTCTACAATG
GAAGAAGATTGAGTGTTTTTCAGTAGTTTACCGATTTTCCAGTCCGCATT
TCTCGACAACATCGTAAATCGAGTATTGGTGGTTTCGTCAAAGACAATAC
TGGAAGAATAACCCTACCATAACTACCTAACAACTAACTAATGAAAGaac
atGATCTCATCGGAATGTTCGTCTCATTTCATTGCTGCATACCACGATCT
ACAACAAAGTAGTTGGGAGCCCAGCATCAACGATCAACAAGCCAGCAAAG
ATGGTGATGGTGCTATACGAAAACAAAGCAAAGATGAGGTCATCAACGGT
GCAgtaatgattaaaaacatcgaGAATATACCAGTCATTATCGGCGATTT
AAAAACAACCAATCAGAATCCACAACGTGAAGAGAGCACCGATGACGTAT
TTGACAGTGACGAAGATACTTCTAGTCGTAAAGACCAGCCTTTAGCTTCT
TGCGATGTTCCTTCGTTTTGGAAGAAAGACATGCGAGATCGTCGAACGTC
AATCAATGCCGATTTCCTATCCCCCATACGTATGGATCGATTAGATCGCT
CACACAGGCGAGCGTCTTTGAACCCTGAAGGCTTTCAGGGATTGCGAGTG
TTATCAGCTCAATTACAAGATCAACGCTCAAATGCGTCTAGTCGTAGTGA
GAACTCAGTGATGGGATTTGATAGCGAGTACGGTGGCAGCCAATCAAATG
ACAGCAGTGACAATGAAAGCGAACCGGAAGACAAAATCGATTTCCAAAAC
ATTACACCACAATCGAACGCTCTGTTGCAACGTCGGCGCCGGTTAAGTGG
CGTCGACCCACCACCGGATCCTAAAATGCTAACCGCCCATCAATCAAAGG
TAGGAGCCCTGAAACCGCCCCTAACGAATCGACGAATGAGCGTAGATACC
TATATGGGAATGAATGAAAAAACTGACAACAGTAGACCATCGCGTCGATT
TTCAGTGATGACTAAAAAGACGAATTTACCGAAAATCGAAACTGGTGGAT
ATTTAGTGAACCAAAACACTTTGAAAACTGGCTCCGTTAGGCCAGTACCT
GAACGGCGTAGTAGCGTCTCCCCTTCGAATTTTAACCATGATGCCCCAGT
TAGAGACGTGCGTTTGAATAGACCAATAGACGGGCAACTTGTGCGCCGTG
CTTCTAGAGTAATATCAAAGGTTGAACAAGACTTGATTGagaaagaatta
aaatttctgGGAATTACTAAAGACAAGAAAGACCCTTTGGCTGATATTCG
AAAATGCCGTTATCTAAGAATTAACCATGACCCTAACAATGATGATAAAT
GCCCGTGTAATAAATGTGAAAAAGAAAGCGGCACCTTTTCGCCGAGATCT
CGGTCACATTCCGGTTCCACTTGCTGATGGTATCGTATGATTCGTTGGTT
AATGTTTGAAATAGTCATTTTCGTTCTAGAAAATTCACCTAAAAAGTTAG
TTGTCAAAATTCTGAATTATTTCTCAGGTTAACGTTTTTAGAAAAGTCTT
TTAAAATCTAATACGTGACTGCTAGTTTCACACtactttcaattcttttt
tttgaaaaaactcaagGGCAGAAAGAGTTCCCTAATATCCCGcagttttc
aattttaaagCCTTTTTATGATCGGAACTTCAACAAGTCCTTTTTCGTTG
CTATTCTCAATCGTGCCTTATTTTGTACTAAGGAGATAATCTAAAGACAA
TACTCCTTCCTTAAAATCAACTGGGCTAGTAGGATAGAAACCTCTGCACA
TTTATCTTTCATTCAAGTTTATGTAAAAACGTTTGTATATTATTTTTGTt
gtatgttttttgaaaaaggtaatTTGTGACTtgcttttttgtaaaatata
tgTCAATATCGGAATGTTCGAAATATACGCTTGGTCCAATATCGG Run BLAST on NCBI transcript from alignment at scaffold_362:219456..225315+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062169 ID=TCONS_00062169|Name=TCONS_00062169|organism=Clytia hemisphaerica|type=transcript|length=5860bp|location=Sequence derived from alignment at scaffold_362:219456..225315+ (Clytia hemisphaerica)
AAATTTCTTTAGATAAAATCCAAGACAGAGTGATGTCAAACCACGAGGGT
TGTAATCGAACTCGGTCCCATGCTTCTGACAAACGGGTAATCTGAATCGA
CACCACTTAGTAATTGTAACCTTTTTTTCTCATAAATATTATTTGTTATG
TAAAGacttaatttgttttttgtaaCGCTGACGGGCGAATATTTCTTGGT
ACGGTAGTTATTCATTTCTTGGATAATCGGAAGAGCATGATAAAAGAACT
CATCAGGAATCTCGGAAAGTAAAAATACCAGCCTGAGATATTCTACAATG
GAAGAAGATTGAGTGTTTTTCAGTAGTTTACCGATTTTCCAGTCCGCATT
TCTCGACAACATCGTAAATCGAGTATTGGTGGTTTCGTCAAAGACAATAC
TGGAAGAATAACCCTACCATAACTACCTAACAACTAACTAATGAAAGGta
attaatatttttcttttgttcccGTTTAGGTGGGTAGAGATTTCGTCGGA
AATCTGTCGATCATTCAAGCACAATACAATCTGACGGTTATTCCTATCTC
TGGCCGAATTTCAGTTACTCTTCATTTTCGCCCGTTTAAAACTGGGCATT
TCCACCGTCTTAAGATTCAGCCGAATTTGAAGGACCTCGTTAAATTTCAT
CAGTTTTAAATCTAAAATGAAAGCCTGTCTTTAAGCACTGTTTAAGTAAT
CATAAATTGTCTTTACACGGTATGAAACGAATATTTTCTGCCCTGTTGAT
ATTAGCGAGATTGTGTACCTGTGTTTTTTTTCTGCGGCGGACACGGTTAA
GCTTCTGTGTTGTCTCGatcctgatcaactgaggaTGACGGTAAACAAGC
ACATTAGCCGGCCTCGATTTTTCAATACAGAACTGTGGATTATTCGGAAT
TACTTCATTCACTTCCGACCTAACTGTAGTTAAGGTTATTGCTGTGATTT
TTCTTGCTTCGAATCTGCCCACCTTTTCATAACAAATAAAAACTCCTACA
CATAGACACAATCTACAAGGCGCCACATAACAGTTACATTTAAATCTCCA
TTAATTGTGTTACCGGTAGTATGGCTACGTAGCTCAATCTTTgccgttgt
tttgtataagattcccattttcgcactaagattcttgtcactttcGGAAT
CTTTCCGCTACTTTTCGGGATTTTTCGAGATAaccggcatgagattggaa
agggtttgtttctacggaaaatcttgtgtttaactcacgaaactgcctaa
ctttctgaagcttatttttcaactacccgaagtcctgctcttttccgcta
gaaaagtgtTAAGTTCGGTTATGTATTTTTCTTTagttattttcagattt
tcaccTTATTATGCACTTAGGCAAGGTCTTGACTAGAGTGTTTTGTAAAA
GAAATTCATGAATTTATTCCTTCCTAAATATTTACCTAAGGTCATCTTTA
AAAGAGCCGCCAGACTTTAAAAATTTGTATTACGATTCTTTAAACGTTGG
CCCCTCAAAATGATAAGTTTACTAGAAAGACTCTCCGCAATTCGATCTtt
ctctacacgtttttttataagaacatcttgaaTCTTTGAAACCTTCGgtt
gttctaaactttttgagctttaataagcctaaaaatttaCTTAACATGTT
CATatattcaccattttgtgagtatttttgtaaaatgtttttaactaaat
gttcttaatattttggccgtcgaagccttatgttcttgttctaaaaagaa
cgtgtaattcgaatgaaaatgtttttgtcCTAAAAACCCGAATCAACGAG
AATAACACGATAAGCACTAATTTTTCCCCGGGAAATCATTTCTGTAAGTC
TATCTGTCTTCGCAATAAACTGCGAAATCACATGAGGTCAAATCCATAAT
TAATTGCATGGGGCACATTACTCTTATAAGCTTATTCATAATCAAACCTA
CATAtcagttttattttcaatacaGCTTAGTAAAGTACGAATAATTCTTT
TTTGGTGTTAAAATGAGGATGAGAACACTTATTTCGAGTAAGCCAAATTT
CGCGAAAACATGGAAAAAGCCAGCAAGTATAATCGAAGAAACGGTTGATT
GTAACAATGTAGTTATGCAACCTAAAGTTGCGTTTGTGGTAAGGAAGAAA
CATATTTAATTTTGAAGCGAGATAGATATGTTAAGTaggtttgcgaccgc
agtcgaggtcGACCCAAAGGCTCTCTTTTCtctagctatctacccgaagg
taggatttctccacttactcttaggtgccaaataaacgggggggttggaa
aattttcgaaattttaataaacggggggtacctaattgccggggggggtt
ggaaattgtacttctgaaaccccaaaaataaggtaaatataggctaaaat
caggctattaagagcaaaataaggggccttctctttgacagctgaaaata
ttcttaagaatTAATAAACGTGGGGGTCCttataaggtccggggggggtt
ggaaaattttcgaaaaattaacaagcgggggggcccgtttatttggcacc
taagagtaccctCCACCATCTTAGGAATCGTTGGTATGACCCGACTGcaa
caaccttgcgcaccgtagctagCTGGATGCTCTCATTTCATACTAAAGAC
TTTTAATTTGATGATTCTGGCGTTGAAAAACCAGTACTGTATTTCAaagt
tttggctgaaaaaaaatatatattctttTGCCATTTTTACTGAGAAAATT
GAAGGTCGCAATGAAGCTGCCTCTCATCATAAATCTGTATAAATGCGAAC
TCAAAACGGAAGTTTGATTTGCAAGAAATACAGAGGGATTCGATTCGTAG
AAACAGTGTTGTAATTTTTCCAGTTGAAACGTTGAATTTTCGAACATAGA
TTTCGAATGCTGCAAACTCGAAATTCTAgaggaaggggggggggttatgC
TCTATGGATAATACTCTGGCGGCGACagctttttcaaaacattttaaaaa
caatatattTTGGCGTTATTTTCTTTCACTTGACTTGACGTCATCTTGCT
TCAAATACGTATAAAAAACGGTGGCACTGAATCGTGGGGGACTTGTATAT
TATGACGCAAGGATCTCTTTTTATAGCTTTATTTGTAactcaaatttcat
gtttctgtTTGCGTGCGTGCTTGTAAGCCAAATGGGACCCCGGGCCCACA
ATTATATTCACAGTATATTGGTTGCTATGGTAACAAAGTAGCCCTATGCC
GTAAAGGAAATCTGAAACACAAAAGAAACTGTTTACGTTTTATAAGAGAT
AATAGCTTGTCCAATATACTGCTTTATCTTATTAATGGGGCACGGGACTT
CTAATTACCCCGTTGCACAAAACTTGTTTCATTAAAGTGCACAAATAGAA
TAATTAACGCGAattacacgtttcttttttataagaacataacgcttcga
cggccaaaatgttaagaacaagttaagaacattttaaggctttgtggact
cgaaacactcgatttcttaggaaaatgggtaaaaatggtcaaaaattggc
taaaataagaacatgttaagaacattttaaggctcgaAACCTAAAAAGTT
AATAACATCCAAAAGCTTCaacatttttggatgttcttctaaaaaaacgt
gtacacataagaaatatttttcacaatATTTTTCTTCCTTGTTGAGTTTT
GATTCATAATATCTGTGACAACTTACCCAGTACGAacgtgaaaagttttt
ttcgaattGCGCTAAAAGATGAAAAGAATACGGTATTTTTCTCGGAACAA
GAAAAGTGTGCCATTATGGAAGGTTAGTCTCAAAGGACAtaaattttgga
caattttagcCTCTCAGTGTCGAGGAAGAGAGAGCTTTAAATCTTGTGTT
CAGGGCCTAAAGAAGGTCACTGTAGTGTTTTGCTGTTTGGTGGGTTGAGG
AGGAGATCTAAATTGGAAAATCACTCAAAATATGTTTATCACAGAATTAA
AGACTGCATAAATTACCGGCTCAGAGGTAGCCCGGGTGTACTTGCTTAAT
GATCATTGActatagaaaatgaatttcgggtctttcatttttctttttct
tttttttttcagaacatGATCTCATCGGAATGTTCGTCTCATTTCATTGC
TGCATACCACGATCTACAACAAAGTAGTTGGGAGCCCAGCATCAACGATC
AACAAGCCAGCAAAGATGGTGATGGTGCTATACGAAAACAAAGCAAAGAT
GAGGTCATCAACGGTGCAgtaatgattaaaaacatcgaGAATATACCAGT
CATTATCGGCGATTTAAAAACAACCAATCAGAATCCACAACGTGAAGAGA
GCACCGATGACGTATTTGACAGTGACGAAGATACTTCTAGTCGTAAAGAC
CAGCCTTTAGCTTCTTGCGATGTTCCTTCGTTTTGGAAGAAAGACATGCG
AGATCGTCGAACGTCAATCAATGCCGATTTCCTATCCCCCATACGTATGG
ATCGATTAGATCGCTCACACAGGCGAGCGTCTTTGAACCCTGAAGGCTTT
CAGGGATTGCGAGTGTTATCAGCTCAATTACAAGATCAACGCTCAAATGC
GTCTAGTCGTAGTGAGAACTCAGTGATGGGATTTGATAGCGAGTACGGTG
GCAGCCAATCAAATGACAGCAGTGACAATGAAAGCGAACCGGAAGACAAA
ATCGATTTCCAAAACATTACACCACAATCGAACGCTCTGTTGCAACGTCG
GCGCCGGTTAAGTGGCGTCGACCCACCACCGGATCCTAAAATGCTAACCG
CCCATCAATCAAAGGTAGGAGCCCTGAAACCGCCCCTAACGAATCGACGA
ATGAGCGTAGATACCTATATGGGAATGAATGAAAAAACTGACAACAGTAG
ACCATCGCGTCGATTTTCAGTGATGACTAAAAAGACGAATTTACCGAAAA
TCGAAACTGGTGGATATTTAGTGAACCAAAACACTTTGAAAACTGGCTCC
GTTAGGCCAGTACCTGAACGGCGTAGTAGCGTCTCCCCTTCGAATTTTAA
CCATGATGCCCCAGTTAGAGACGTGCGTTTGAATAGACCAATAGACGGGC
AACTTGTGCGCCGTGCTTCTAGAGTAATATCAAAGGTTGAACAAGACTTG
ATTGagaaagaattaaaatttctgGGAATTACTAAAGACAAGAAAGACCC
TTTGGCTGATATTCGAAAATGCCGTTATCTAAGAATTAACCATGACCCTA
ACAATGATGATAAATGCCCGTGTAATAAATGTGAAAAAGAAAGCGGCACC
TTTTCGCCGAGATCTCGGTCACATTCCGGTTCCACTTGCTGATGGTATCG
TATGATTCGTTGGTTAATGTTTGAAATAGTCATTTTCGTTCTAGAAAATT
CACCTAAAAAGTTAGTTGTCAAAATTCTGAATTATTTCTCAGGTTAACGT
TTTTAGAAAAGTCTTTTAAAATCTAATACGTGACTGCTAGTTTCACACta
ctttcaattcttttttttgaaaaaactcaagGGCAGAAAGAGTTCCCTAA
TATCCCGcagttttcaattttaaagCCTTTTTATGATCGGAACTTCAACA
AGTCCTTTTTCGTTGCTATTCTCAATCGTGCCTTATTTTGTACTAAGGAG
ATAATCTAAAGACAATACTCCTTCCTTAAAATCAACTGGGCTAGTAGGAT
AGAAACCTCTGCACATTTATCTTTCATTCAAGTTTATGTAAAAACGTTTG
TATATTATTTTTGTtgtatgttttttgaaaaaggtaatTTGTGACTtgct
tttttgtaaaatatatgTCAATATCGGAATGTTCGAAATATACGCTTGGT
CCAATATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062169-exon-scaffold_362-1491911889:219456..219902 | TCONS_00062169-exon-scaffold_362-1491911889:219456..219902 | Clytia hemisphaerica | exon |
| TCONS_00062169-exon-scaffold_362-1510915933:219456..219902 | TCONS_00062169-exon-scaffold_362-1510915933:219456..219902 | Clytia hemisphaerica | exon |
| TCONS_00062169-exon-scaffold_362-1575043694:219456..219902 | TCONS_00062169-exon-scaffold_362-1575043694:219456..219902 | Clytia hemisphaerica | exon |
| TCONS_00062169-exon-scaffold_362-1491911889:223568..225315 | TCONS_00062169-exon-scaffold_362-1491911889:223568..225315 | Clytia hemisphaerica | exon |
| TCONS_00062169-exon-scaffold_362-1510915933:223568..225315 | TCONS_00062169-exon-scaffold_362-1510915933:223568..225315 | Clytia hemisphaerica | exon |
| TCONS_00062169-exon-scaffold_362-1575043694:223568..225315 | TCONS_00062169-exon-scaffold_362-1575043694:223568..225315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:219456..225315 + |
Blast
The following BLAST results are available for this feature:
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