|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062170 ID=TCONS_00062170|Name=TCONS_00062170|organism=Clytia hemisphaerica|type=transcript|length=1890bp
CTTTTTTGGTGTTAAAATGAGGATGAGAACACTTATTTCGAGTAAGCCAA
ATTTCGCGAAAACATGGAAAAAGCCAGCAAGTATAATCGAAGAAACGGTT
GATTGTAACAATGTAGTTATGCAACCTAAAGTTGCGTTTGTGaacatGAT
CTCATCGGAATGTTCGTCTCATTTCATTGCTGCATACCACGATCTACAAC
AAAGTAGTTGGGAGCCCAGCATCAACGATCAACAAGCCAGCAAAGATGGT
GATGGTGCTATACGAAAACAAAGCAAAGATGAGGTCATCAACGGTGCAgt
aatgattaaaaacatcgaGAATATACCAGTCATTATCGGCGATTTAAAAA
CAACCAATCAGAATCCACAACGTGAAGAGAGCACCGATGACGTATTTGAC
AGTGACGAAGATACTTCTAGTCGTAAAGACCAGCCTTTAGCTTCTTGCGA
TGTTCCTTCGTTTTGGAAGAAAGACATGCGAGATCGTCGAACGTCAATCA
ATGCCGATTTCCTATCCCCCATACGTATGGATCGATTAGATCGCTCACAC
AGGCGAGCGTCTTTGAACCCTGAAGGCTTTCAGGGATTGCGAGTGTTATC
AGCTCAATTACAAGATCAACGCTCAAATGCGTCTAGTCGTAGTGAGAACT
CAGTGATGGGATTTGATAGCGAGTACGGTGGCAGCCAATCAAATGACAGC
AGTGACAATGAAAGCGAACCGGAAGACAAAATCGATTTCCAAAACATTAC
ACCACAATCGAACGCTCTGTTGCAACGTCGGCGCCGGTTAAGTGGCGTCG
ACCCACCACCGGATCCTAAAATGCTAACCGCCCATCAATCAAAGGTAGGA
GCCCTGAAACCGCCCCTAACGAATCGACGAATGAGCGTAGATACCTATAT
GGGAATGAATGAAAAAACTGACAACAGTAGACCATCGCGTCGATTTTCAG
TGATGACTAAAAAGACGAATTTACCGAAAATCGAAACTGGTGGATATTTA
GTGAACCAAAACACTTTGAAAACTGGCTCCGTTAGGCCAGTACCTGAACG
GCGTAGTAGCGTCTCCCCTTCGAATTTTAACCATGATGCCCCAGTTAGAG
ACGTGCGTTTGAATAGACCAATAGACGGGCAACTTGTGCGCCGTGCTTCT
AGAGTAATATCAAAGGTTGAACAAGACTTGATTGagaaagaattaaaatt
tctgGGAATTACTAAAGACAAGAAAGACCCTTTGGCTGATATTCGAAAAT
GCCGTTATCTAAGAATTAACCATGACCCTAACAATGATGATAAATGCCCG
TGTAATAAATGTGAAAAAGAAAGCGGCACCTTTTCGCCGAGATCTCGGTC
ACATTCCGGTTCCACTTGCTGATGGTATCGTATGATTCGTTGGTTAATGT
TTGAAATAGTCATTTTCGTTCTAGAAAATTCACCTAAAAAGTTAGTTGTC
AAAATTCTGAATTATTTCTCAGGTTAACGTTTTTAGAAAAGTCTTTTAAA
ATCTAATACGTGACTGCTAGTTTCACACtactttcaattcttttttttga
aaaaactcaagGGCAGAAAGAGTTCCCTAATATCCCGcagttttcaattt
taaagCCTTTTTATGATCGGAACTTCAACAAGTCCTTTTTCGTTGCTATT
CTCAATCGTGCCTTATTTTGTACTAAGGAGATAATCTAAAGACAATACTC
CTTCCTTAAAATCAACTGGGCTAGTAGGATAGAAACCTCTGCACATTTAT
CTTTCATTCAAGTTTATGTAAAAACGTTTGTATATTATTTTTGTtgtatg
ttttttgaaaaaggtaatTTGTGACTtgcttttttgtaaaatatatgTCA
ATATCGGAATGTTCGAAATATACGCTTGGTCCAATATCGG Run BLAST on NCBI protein sequence of TCONS_00062170-protein >TCONS_00062170-protein ID=TCONS_00062170-protein|Name=TCONS_00062170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
FFGVKMRMRTLISSKPNFAKTWKKPASIIEETVDCNNVVMQPKVAFVNMI
SSECSSHFIAAYHDLQQSSWEPSINDQQASKDGDGAIRKQSKDEVINGAV
MIKNIENIPVIIGDLKTTNQNPQREESTDDVFDSDEDTSSRKDQPLASCD
VPSFWKKDMRDRRTSINADFLSPIRMDRLDRSHRRASLNPEGFQGLRVLS
AQLQDQRSNASSRSENSVMGFDSEYGGSQSNDSSDNESEPEDKIDFQNIT
PQSNALLQRRRRLSGVDPPPDPKMLTAHQSKVGALKPPLTNRRMSVDTYM
GMNEKTDNSRPSRRFSVMTKKTNLPKIETGGYLVNQNTLKTGSVRPVPER
RSSVSPSNFNHDAPVRDVRLNRPIDGQLVRRASRVISKVEQDLIEKELKF
LGITKDKKDPLADIRKCRYLRINHDPNNDDKCPCNKCEKESGTFSPRSRS
HSGSTC Run BLAST on NCBI transcript from alignment at scaffold_362:221452..225315+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062170 ID=TCONS_00062170|Name=TCONS_00062170|organism=Clytia hemisphaerica|type=transcript|length=3864bp|location=Sequence derived from alignment at scaffold_362:221452..225315+ (Clytia hemisphaerica)
CTTTTTTGGTGTTAAAATGAGGATGAGAACACTTATTTCGAGTAAGCCAA
ATTTCGCGAAAACATGGAAAAAGCCAGCAAGTATAATCGAAGAAACGGTT
GATTGTAACAATGTAGTTATGCAACCTAAAGTTGCGTTTGTGGTAAGGAA
GAAACATATTTAATTTTGAAGCGAGATAGATATGTTAAGTaggtttgcga
ccgcagtcgaggtcGACCCAAAGGCTCTCTTTTCtctagctatctacccg
aaggtaggatttctccacttactcttaggtgccaaataaacgggggggtt
ggaaaattttcgaaattttaataaacggggggtacctaattgccgggggg
ggttggaaattgtacttctgaaaccccaaaaataaggtaaatataggcta
aaatcaggctattaagagcaaaataaggggccttctctttgacagctgaa
aatattcttaagaatTAATAAACGTGGGGGTCCttataaggtccgggggg
ggttggaaaattttcgaaaaattaacaagcgggggggcccgtttatttgg
cacctaagagtaccctCCACCATCTTAGGAATCGTTGGTATGACCCGACT
GcaacaaccttgcgcaccgtagctagCTGGATGCTCTCATTTCATACTAA
AGACTTTTAATTTGATGATTCTGGCGTTGAAAAACCAGTACTGTATTTCA
aagttttggctgaaaaaaaatatatattctttTGCCATTTTTACTGAGAA
AATTGAAGGTCGCAATGAAGCTGCCTCTCATCATAAATCTGTATAAATGC
GAACTCAAAACGGAAGTTTGATTTGCAAGAAATACAGAGGGATTCGATTC
GTAGAAACAGTGTTGTAATTTTTCCAGTTGAAACGTTGAATTTTCGAACA
TAGATTTCGAATGCTGCAAACTCGAAATTCTAgaggaaggggggggggtt
atgCTCTATGGATAATACTCTGGCGGCGACagctttttcaaaacatttta
aaaacaatatattTTGGCGTTATTTTCTTTCACTTGACTTGACGTCATCT
TGCTTCAAATACGTATAAAAAACGGTGGCACTGAATCGTGGGGGACTTGT
ATATTATGACGCAAGGATCTCTTTTTATAGCTTTATTTGTAactcaaatt
tcatgtttctgtTTGCGTGCGTGCTTGTAAGCCAAATGGGACCCCGGGCC
CACAATTATATTCACAGTATATTGGTTGCTATGGTAACAAAGTAGCCCTA
TGCCGTAAAGGAAATCTGAAACACAAAAGAAACTGTTTACGTTTTATAAG
AGATAATAGCTTGTCCAATATACTGCTTTATCTTATTAATGGGGCACGGG
ACTTCTAATTACCCCGTTGCACAAAACTTGTTTCATTAAAGTGCACAAAT
AGAATAATTAACGCGAattacacgtttcttttttataagaacataacgct
tcgacggccaaaatgttaagaacaagttaagaacattttaaggctttgtg
gactcgaaacactcgatttcttaggaaaatgggtaaaaatggtcaaaaat
tggctaaaataagaacatgttaagaacattttaaggctcgaAACCTAAAA
AGTTAATAACATCCAAAAGCTTCaacatttttggatgttcttctaaaaaa
acgtgtacacataagaaatatttttcacaatATTTTTCTTCCTTGTTGAG
TTTTGATTCATAATATCTGTGACAACTTACCCAGTACGAacgtgaaaagt
ttttttcgaattGCGCTAAAAGATGAAAAGAATACGGTATTTTTCTCGGA
ACAAGAAAAGTGTGCCATTATGGAAGGTTAGTCTCAAAGGACAtaaattt
tggacaattttagcCTCTCAGTGTCGAGGAAGAGAGAGCTTTAAATCTTG
TGTTCAGGGCCTAAAGAAGGTCACTGTAGTGTTTTGCTGTTTGGTGGGTT
GAGGAGGAGATCTAAATTGGAAAATCACTCAAAATATGTTTATCACAGAA
TTAAAGACTGCATAAATTACCGGCTCAGAGGTAGCCCGGGTGTACTTGCT
TAATGATCATTGActatagaaaatgaatttcgggtctttcatttttcttt
ttcttttttttttcagaacatGATCTCATCGGAATGTTCGTCTCATTTCA
TTGCTGCATACCACGATCTACAACAAAGTAGTTGGGAGCCCAGCATCAAC
GATCAACAAGCCAGCAAAGATGGTGATGGTGCTATACGAAAACAAAGCAA
AGATGAGGTCATCAACGGTGCAgtaatgattaaaaacatcgaGAATATAC
CAGTCATTATCGGCGATTTAAAAACAACCAATCAGAATCCACAACGTGAA
GAGAGCACCGATGACGTATTTGACAGTGACGAAGATACTTCTAGTCGTAA
AGACCAGCCTTTAGCTTCTTGCGATGTTCCTTCGTTTTGGAAGAAAGACA
TGCGAGATCGTCGAACGTCAATCAATGCCGATTTCCTATCCCCCATACGT
ATGGATCGATTAGATCGCTCACACAGGCGAGCGTCTTTGAACCCTGAAGG
CTTTCAGGGATTGCGAGTGTTATCAGCTCAATTACAAGATCAACGCTCAA
ATGCGTCTAGTCGTAGTGAGAACTCAGTGATGGGATTTGATAGCGAGTAC
GGTGGCAGCCAATCAAATGACAGCAGTGACAATGAAAGCGAACCGGAAGA
CAAAATCGATTTCCAAAACATTACACCACAATCGAACGCTCTGTTGCAAC
GTCGGCGCCGGTTAAGTGGCGTCGACCCACCACCGGATCCTAAAATGCTA
ACCGCCCATCAATCAAAGGTAGGAGCCCTGAAACCGCCCCTAACGAATCG
ACGAATGAGCGTAGATACCTATATGGGAATGAATGAAAAAACTGACAACA
GTAGACCATCGCGTCGATTTTCAGTGATGACTAAAAAGACGAATTTACCG
AAAATCGAAACTGGTGGATATTTAGTGAACCAAAACACTTTGAAAACTGG
CTCCGTTAGGCCAGTACCTGAACGGCGTAGTAGCGTCTCCCCTTCGAATT
TTAACCATGATGCCCCAGTTAGAGACGTGCGTTTGAATAGACCAATAGAC
GGGCAACTTGTGCGCCGTGCTTCTAGAGTAATATCAAAGGTTGAACAAGA
CTTGATTGagaaagaattaaaatttctgGGAATTACTAAAGACAAGAAAG
ACCCTTTGGCTGATATTCGAAAATGCCGTTATCTAAGAATTAACCATGAC
CCTAACAATGATGATAAATGCCCGTGTAATAAATGTGAAAAAGAAAGCGG
CACCTTTTCGCCGAGATCTCGGTCACATTCCGGTTCCACTTGCTGATGGT
ATCGTATGATTCGTTGGTTAATGTTTGAAATAGTCATTTTCGTTCTAGAA
AATTCACCTAAAAAGTTAGTTGTCAAAATTCTGAATTATTTCTCAGGTTA
ACGTTTTTAGAAAAGTCTTTTAAAATCTAATACGTGACTGCTAGTTTCAC
ACtactttcaattcttttttttgaaaaaactcaagGGCAGAAAGAGTTCC
CTAATATCCCGcagttttcaattttaaagCCTTTTTATGATCGGAACTTC
AACAAGTCCTTTTTCGTTGCTATTCTCAATCGTGCCTTATTTTGTACTAA
GGAGATAATCTAAAGACAATACTCCTTCCTTAAAATCAACTGGGCTAGTA
GGATAGAAACCTCTGCACATTTATCTTTCATTCAAGTTTATGTAAAAACG
TTTGTATATTATTTTTGTtgtatgttttttgaaaaaggtaatTTGTGACT
tgcttttttgtaaaatatatgTCAATATCGGAATGTTCGAAATATACGCT
TGGTCCAATATCGG Coding sequence (CDS) from alignment at scaffold_362:221452..225315+ >TCONS_00062170 ID=TCONS_00062170|Name=TCONS_00062170|organism=Clytia hemisphaerica|type=CDS|length=2742bp|location=Sequence derived from alignment at scaffold_362:221452..225315+ (Clytia hemisphaerica)
TTTTTTGGTGTTAAAATGAGGATGAGAACACTTATTTCGAGTAAGCCAAA
TTTCGCGAAAACATGGAAAAAGCCAGCAAGTATAATCGAAGAAACGGTTG
ATTGTAACAATGTAGTTATGCAACCTAAAGTTGCGTTTGTGaacatGATC
TCATCGGAATGTTCGTCTCATTTCATTGCTGCATACCACGATCTACAACA
AAGTAGTTGGGAGCCCAGCATCAACGATCAACAAGCCAGCAAAGATGGTG
ATGGTGCTATACGAAAACAAAGCAAAGATGAGGTCATCAACGGTGCAgta
atgattaaaaacatcgaGAATATACCAGTCATTATCGGCGATTTAAAAAC
AACCAATCAGAATCCACAACGTGAAGAGAGCACCGATGACGTATTTGACA
GTGACGAAGATACTTCTAGTCGTAAAGACCAGCCTTTAGCTTCTTGCGAT
GTTCCTTCGTTTTGGAAGAAAGACATGCGAGATCGTCGAACGTCAATCAA
TGCCGATTTCCTATCCCCCATACGTATGGATCGATTAGATCGCTCACACA
GGCGAGCGTCTTTGAACCCTGAAGGCTTTCAGGGATTGCGAGTGTTATCA
GCTCAATTACAAGATCAACGCTCAAATGCGTCTAGTCGTAGTGAGAACTC
AGTGATGGGATTTGATAGCGAGTACGGTGGCAGCCAATCAAATGACAGCA
GTGACAATGAAAGCGAACCGGAAGACAAAATCGATTTCCAAAACATTACA
CCACAATCGAACGCTCTGTTGCAACGTCGGCGCCGGTTAAGTGGCGTCGA
CCCACCACCGGATCCTAAAATGCTAACCGCCCATCAATCAAAGGTAGGAG
CCCTGAAACCGCCCCTAACGAATCGACGAATGAGCGTAGATACCTATATG
GGAATGAATGAAAAAACTGACAACAGTAGACCATCGCGTCGATTTTCAGT
GATGACTAAAAAGACGAATTTACCGAAAATCGAAACTGGTGGATATTTAG
TGAACCAAAACACTTTGAAAACTGGCTCCGTTAGGCCAGTACCTGAACGG
CGTAGTAGCGTCTCCCCTTCGAATTTTAACCATGATGCCCCAGTTAGAGA
CGTGCGTTTGAATAGACCAATAGACGGGCAACTTGTGCGCCGTGCTTCTA
GAGTAATATCAAAGGTTGAACAAGACTTGATTGagaaagaattaaaattt
ctgGGAATTACTAAAGACAAGAAAGACCCTTTGGCTGATATTCGAAAATG
CCGTTATCTAAGAATTAACCATGACCCTAACAATGATGATAAATGCCCGT
GTAATAAATGTGAAAAAGAAAGCGGCACCTTTTCGCCGAGATCTCGGTCA
CATTCCGGTTCCACTTGCTGATTTTTTGGTGTTAAAATGAGGATGAGAAC
ACTTATTTCGAGTAAGCCAAATTTCGCGAAAACATGGAAAAAGCCAGCAA
GTATAATCGAAGAAACGGTTGATTGTAACAATGTAGTTATGCAACCTAAA
GTTGCGTTTGTGaacatGATCTCATCGGAATGTTCGTCTCATTTCATTGC
TGCATACCACGATCTACAACAAAGTAGTTGGGAGCCCAGCATCAACGATC
AACAAGCCAGCAAAGATGGTGATGGTGCTATACGAAAACAAAGCAAAGAT
GAGGTCATCAACGGTGCAgtaatgattaaaaacatcgaGAATATACCAGT
CATTATCGGCGATTTAAAAACAACCAATCAGAATCCACAACGTGAAGAGA
GCACCGATGACGTATTTGACAGTGACGAAGATACTTCTAGTCGTAAAGAC
CAGCCTTTAGCTTCTTGCGATGTTCCTTCGTTTTGGAAGAAAGACATGCG
AGATCGTCGAACGTCAATCAATGCCGATTTCCTATCCCCCATACGTATGG
ATCGATTAGATCGCTCACACAGGCGAGCGTCTTTGAACCCTGAAGGCTTT
CAGGGATTGCGAGTGTTATCAGCTCAATTACAAGATCAACGCTCAAATGC
GTCTAGTCGTAGTGAGAACTCAGTGATGGGATTTGATAGCGAGTACGGTG
GCAGCCAATCAAATGACAGCAGTGACAATGAAAGCGAACCGGAAGACAAA
ATCGATTTCCAAAACATTACACCACAATCGAACGCTCTGTTGCAACGTCG
GCGCCGGTTAAGTGGCGTCGACCCACCACCGGATCCTAAAATGCTAACCG
CCCATCAATCAAAGGTAGGAGCCCTGAAACCGCCCCTAACGAATCGACGA
ATGAGCGTAGATACCTATATGGGAATGAATGAAAAAACTGACAACAGTAG
ACCATCGCGTCGATTTTCAGTGATGACTAAAAAGACGAATTTACCGAAAA
TCGAAACTGGTGGATATTTAGTGAACCAAAACACTTTGAAAACTGGCTCC
GTTAGGCCAGTACCTGAACGGCGTAGTAGCGTCTCCCCTTCGAATTTTAA
CCATGATGCCCCAGTTAGAGACGTGCGTTTGAATAGACCAATAGACGGGC
AACTTGTGCGCCGTGCTTCTAGAGTAATATCAAAGGTTGAACAAGACTTG
ATTGagaaagaattaaaatttctgGGAATTACTAAAGACAAGAAAGACCC
TTTGGCTGATATTCGAAAATGCCGTTATCTAAGAATTAACCATGACCCTA
ACAATGATGATAAATGCCCGTGTAATAAATGTGAAAAAGAAAGCGGCACC
TTTTCGCCGAGATCTCGGTCACATTCCGGTTCCACTTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062170-exon-scaffold_362-1491911889:221452..221593 | TCONS_00062170-exon-scaffold_362-1491911889:221452..221593 | Clytia hemisphaerica | exon |
| TCONS_00062170-exon-scaffold_362-1510915933:221452..221593 | TCONS_00062170-exon-scaffold_362-1510915933:221452..221593 | Clytia hemisphaerica | exon |
| TCONS_00062170-exon-scaffold_362-1575043694:221452..221593 | TCONS_00062170-exon-scaffold_362-1575043694:221452..221593 | Clytia hemisphaerica | exon |
| TCONS_00062170-exon-scaffold_362-1491911889:223568..225315 | TCONS_00062170-exon-scaffold_362-1491911889:223568..225315 | Clytia hemisphaerica | exon |
| TCONS_00062170-exon-scaffold_362-1510915933:223568..225315 | TCONS_00062170-exon-scaffold_362-1510915933:223568..225315 | Clytia hemisphaerica | exon |
| TCONS_00062170-exon-scaffold_362-1575043694:223568..225315 | TCONS_00062170-exon-scaffold_362-1575043694:223568..225315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:221452..225315 + |
Blast
The following BLAST results are available for this feature:
|
