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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062171 ID=TCONS_00062171|Name=TCONS_00062171|organism=Clytia hemisphaerica|type=transcript|length=2250bp
GCTTTATCTTATTAATGGGGCACGGGACTTCTAATTACCCCGTTGCACAA
AACTTGTTTCATTAAAGTGCACAAATAGAATAATTAACGCGAattacacg
tttcttttttataagaacataacgcttcgacggccaaaatgttaagaaca
agttaagaacattttaaggctttgtggactcgaaacactcgatttcttag
gaaaatgggtaaaaatggtcaaaaattggctaaaataagaacatgttaag
aacattttaaggctcgaAACCTAAAAAGTTAATAACATCCAAAAGCTTCa
acatttttggatgttcttctaaaaaaacgtgtacacataagaaatatttt
tcacaatATTTTTCTTCCTTGTTGAGTTTTGATTCATAATATCTGTGACA
ACTTACCCAGTACGAacgtgaaaagtttttttcgaattGCGCTAAAAGAT
GAAAAGAATACGGTATTTTTCTCGGAACAAGAAAAGTGTGCCATTATGGA
AGaacatGATCTCATCGGAATGTTCGTCTCATTTCATTGCTGCATACCAC
GATCTACAACAAAGTAGTTGGGAGCCCAGCATCAACGATCAACAAGCCAG
CAAAGATGGTGATGGTGCTATACGAAAACAAAGCAAAGATGAGGTCATCA
ACGGTGCAgtaatgattaaaaacatcgaGAATATACCAGTCATTATCGGC
GATTTAAAAACAACCAATCAGAATCCACAACGTGAAGAGAGCACCGATGA
CGTATTTGACAGTGACGAAGATACTTCTAGTCGTAAAGACCAGCCTTTAG
CTTCTTGCGATGTTCCTTCGTTTTGGAAGAAAGACATGCGAGATCGTCGA
ACGTCAATCAATGCCGATTTCCTATCCCCCATACGTATGGATCGATTAGA
TCGCTCACACAGGCGAGCGTCTTTGAACCCTGAAGGCTTTCAGGGATTGC
GAGTGTTATCAGCTCAATTACAAGATCAACGCTCAAATGCGTCTAGTCGT
AGTGAGAACTCAGTGATGGGATTTGATAGCGAGTACGGTGGCAGCCAATC
AAATGACAGCAGTGACAATGAAAGCGAACCGGAAGACAAAATCGATTTCC
AAAACATTACACCACAATCGAACGCTCTGTTGCAACGTCGGCGCCGGTTA
AGTGGCGTCGACCCACCACCGGATCCTAAAATGCTAACCGCCCATCAATC
AAAGGTAGGAGCCCTGAAACCGCCCCTAACGAATCGACGAATGAGCGTAG
ATACCTATATGGGAATGAATGAAAAAACTGACAACAGTAGACCATCGCGT
CGATTTTCAGTGATGACTAAAAAGACGAATTTACCGAAAATCGAAACTGG
TGGATATTTAGTGAACCAAAACACTTTGAAAACTGGCTCCGTTAGGCCAG
TACCTGAACGGCGTAGTAGCGTCTCCCCTTCGAATTTTAACCATGATGCC
CCAGTTAGAGACGTGCGTTTGAATAGACCAATAGACGGGCAACTTGTGCG
CCGTGCTTCTAGAGTAATATCAAAGGTTGAACAAGACTTGATTGagaaag
aattaaaatttctgGGAATTACTAAAGACAAGAAAGACCCTTTGGCTGAT
ATTCGAAAATGCCGTTATCTAAGAATTAACCATGACCCTAACAATGATGA
TAAATGCCCGTGTAATAAATGTGAAAAAGAAAGCGGCACCTTTTCGCCGA
GATCTCGGTCACATTCCGGTTCCACTTGCTGATGGTATCGTATGATTCGT
TGGTTAATGTTTGAAATAGTCATTTTCGTTCTAGAAAATTCACCTAAAAA
GTTAGTTGTCAAAATTCTGAATTATTTCTCAGGTTAACGTTTTTAGAAAA
GTCTTTTAAAATCTAATACGTGACTGCTAGTTTCACACtactttcaattc
ttttttttgaaaaaactcaagGGCAGAAAGAGTTCCCTAATATCCCGcag
ttttcaattttaaagCCTTTTTATGATCGGAACTTCAACAAGTCCTTTTT
CGTTGCTATTCTCAATCGTGCCTTATTTTGTACTAAGGAGATAATCTAAA
GACAATACTCCTTCCTTAAAATCAACTGGGCTAGTAGGATAGAAACCTCT
GCACATTTATCTTTCATTCAAGTTTATGTAAAAACGTTTGTATATTATTT
TTGTtgtatgttttttgaaaaaggtaatTTGTGACTtgcttttttgtaaa
atatatgTCAATATCGGAATGTTCGAAATATACGCTTGGTCCAATATCGG Run BLAST on NCBI transcript from alignment at scaffold_362:222776..225315+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062171 ID=TCONS_00062171|Name=TCONS_00062171|organism=Clytia hemisphaerica|type=transcript|length=2540bp|location=Sequence derived from alignment at scaffold_362:222776..225315+ (Clytia hemisphaerica)
GCTTTATCTTATTAATGGGGCACGGGACTTCTAATTACCCCGTTGCACAA
AACTTGTTTCATTAAAGTGCACAAATAGAATAATTAACGCGAattacacg
tttcttttttataagaacataacgcttcgacggccaaaatgttaagaaca
agttaagaacattttaaggctttgtggactcgaaacactcgatttcttag
gaaaatgggtaaaaatggtcaaaaattggctaaaataagaacatgttaag
aacattttaaggctcgaAACCTAAAAAGTTAATAACATCCAAAAGCTTCa
acatttttggatgttcttctaaaaaaacgtgtacacataagaaatatttt
tcacaatATTTTTCTTCCTTGTTGAGTTTTGATTCATAATATCTGTGACA
ACTTACCCAGTACGAacgtgaaaagtttttttcgaattGCGCTAAAAGAT
GAAAAGAATACGGTATTTTTCTCGGAACAAGAAAAGTGTGCCATTATGGA
AGGTTAGTCTCAAAGGACAtaaattttggacaattttagcCTCTCAGTGT
CGAGGAAGAGAGAGCTTTAAATCTTGTGTTCAGGGCCTAAAGAAGGTCAC
TGTAGTGTTTTGCTGTTTGGTGGGTTGAGGAGGAGATCTAAATTGGAAAA
TCACTCAAAATATGTTTATCACAGAATTAAAGACTGCATAAATTACCGGC
TCAGAGGTAGCCCGGGTGTACTTGCTTAATGATCATTGActatagaaaat
gaatttcgggtctttcatttttctttttcttttttttttcagaacatGAT
CTCATCGGAATGTTCGTCTCATTTCATTGCTGCATACCACGATCTACAAC
AAAGTAGTTGGGAGCCCAGCATCAACGATCAACAAGCCAGCAAAGATGGT
GATGGTGCTATACGAAAACAAAGCAAAGATGAGGTCATCAACGGTGCAgt
aatgattaaaaacatcgaGAATATACCAGTCATTATCGGCGATTTAAAAA
CAACCAATCAGAATCCACAACGTGAAGAGAGCACCGATGACGTATTTGAC
AGTGACGAAGATACTTCTAGTCGTAAAGACCAGCCTTTAGCTTCTTGCGA
TGTTCCTTCGTTTTGGAAGAAAGACATGCGAGATCGTCGAACGTCAATCA
ATGCCGATTTCCTATCCCCCATACGTATGGATCGATTAGATCGCTCACAC
AGGCGAGCGTCTTTGAACCCTGAAGGCTTTCAGGGATTGCGAGTGTTATC
AGCTCAATTACAAGATCAACGCTCAAATGCGTCTAGTCGTAGTGAGAACT
CAGTGATGGGATTTGATAGCGAGTACGGTGGCAGCCAATCAAATGACAGC
AGTGACAATGAAAGCGAACCGGAAGACAAAATCGATTTCCAAAACATTAC
ACCACAATCGAACGCTCTGTTGCAACGTCGGCGCCGGTTAAGTGGCGTCG
ACCCACCACCGGATCCTAAAATGCTAACCGCCCATCAATCAAAGGTAGGA
GCCCTGAAACCGCCCCTAACGAATCGACGAATGAGCGTAGATACCTATAT
GGGAATGAATGAAAAAACTGACAACAGTAGACCATCGCGTCGATTTTCAG
TGATGACTAAAAAGACGAATTTACCGAAAATCGAAACTGGTGGATATTTA
GTGAACCAAAACACTTTGAAAACTGGCTCCGTTAGGCCAGTACCTGAACG
GCGTAGTAGCGTCTCCCCTTCGAATTTTAACCATGATGCCCCAGTTAGAG
ACGTGCGTTTGAATAGACCAATAGACGGGCAACTTGTGCGCCGTGCTTCT
AGAGTAATATCAAAGGTTGAACAAGACTTGATTGagaaagaattaaaatt
tctgGGAATTACTAAAGACAAGAAAGACCCTTTGGCTGATATTCGAAAAT
GCCGTTATCTAAGAATTAACCATGACCCTAACAATGATGATAAATGCCCG
TGTAATAAATGTGAAAAAGAAAGCGGCACCTTTTCGCCGAGATCTCGGTC
ACATTCCGGTTCCACTTGCTGATGGTATCGTATGATTCGTTGGTTAATGT
TTGAAATAGTCATTTTCGTTCTAGAAAATTCACCTAAAAAGTTAGTTGTC
AAAATTCTGAATTATTTCTCAGGTTAACGTTTTTAGAAAAGTCTTTTAAA
ATCTAATACGTGACTGCTAGTTTCACACtactttcaattcttttttttga
aaaaactcaagGGCAGAAAGAGTTCCCTAATATCCCGcagttttcaattt
taaagCCTTTTTATGATCGGAACTTCAACAAGTCCTTTTTCGTTGCTATT
CTCAATCGTGCCTTATTTTGTACTAAGGAGATAATCTAAAGACAATACTC
CTTCCTTAAAATCAACTGGGCTAGTAGGATAGAAACCTCTGCACATTTAT
CTTTCATTCAAGTTTATGTAAAAACGTTTGTATATTATTTTTGTtgtatg
ttttttgaaaaaggtaatTTGTGACTtgcttttttgtaaaatatatgTCA
ATATCGGAATGTTCGAAATATACGCTTGGTCCAATATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062171-exon-scaffold_362-1491911889:222776..223277 | TCONS_00062171-exon-scaffold_362-1491911889:222776..223277 | Clytia hemisphaerica | exon |
| TCONS_00062171-exon-scaffold_362-1510915933:222776..223277 | TCONS_00062171-exon-scaffold_362-1510915933:222776..223277 | Clytia hemisphaerica | exon |
| TCONS_00062171-exon-scaffold_362-1575043694:222776..223277 | TCONS_00062171-exon-scaffold_362-1575043694:222776..223277 | Clytia hemisphaerica | exon |
| TCONS_00062171-exon-scaffold_362-1491911889:223568..225315 | TCONS_00062171-exon-scaffold_362-1491911889:223568..225315 | Clytia hemisphaerica | exon |
| TCONS_00062171-exon-scaffold_362-1510915933:223568..225315 | TCONS_00062171-exon-scaffold_362-1510915933:223568..225315 | Clytia hemisphaerica | exon |
| TCONS_00062171-exon-scaffold_362-1575043694:223568..225315 | TCONS_00062171-exon-scaffold_362-1575043694:223568..225315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:222776..225315 + |
Blast
The following BLAST results are available for this feature:
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