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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062177 ID=TCONS_00062177|Name=TCONS_00062177|organism=Clytia hemisphaerica|type=transcript|length=2590bp
NGATGATGATCGAAAAAGTCGACAAAGCGAAGTatcatttcaaaaaagaa
attgcaaATAACGTCAGAAGATTTTTAATACAATTAATTTTCCTGGGGAT
CCTGATTTTCACATCGAcgacaattttcttttttgtggAAGAATGTTATT
TTCATGTTCCACAACCTCCAACAAGTTACAATCAAATGTGCAACCAGCTT
TGCCAAAATACTAAAATAATTAACGAAACACAGTCAAATAACACTGAGAT
TGTTAATTTGTTTGGTAACGTTACAAAGTTTTGCGTTCAAGCCAAATGTA
ATTTAGAGGAACATGTTTCACAAAGAAATTGCAAGCTTggtccaaaaaat
gttttcaaatggtGGGGATTTGTCGTGACAACAATTTTTACGATAGGTTA
TGGCAGAACCGTGGCAAAATCTACGCTTGGCAGAGCTTTAACAATAGTGA
TGGCAATTATCGGTATTCCGATGGCTTCTGccaatgttttgttttgtggt
AAAGCTATCAACAACACAATCAAATATTTAATCGTATGCTTTGAAAACGC
TTGCTTGAAACGCCAAAAAATTGTATGGCTTAAACGCAAGGTGGCAGCTG
TTCAAATTTATTTGACAATATCAACTATATTGCTTCATTCTGTTTTCTAC
AAAATGACAACTTTGCAGGAAAGCAGCTTCTTTGAGATAATCTATTACGT
TTGTGTCACGATGTTGACTATAGGCTTCGGCGATGTTTATCCAGACACCA
CTTATTTATACCAACTCTCAATGGTACAACTAGTTATTTTTACTTCACTG
GACGTTGCATTTTTCTATTGGACTTTCTCATTGTTGGGATCAATTATTGA
TTTTATACGATNTTCACTGGACGTAGCATTTTTCTATTGGACTTTCTCAT
TGTTGGGATCAATTATTGATTTTATACGATCTTTAGAAACTGATTTGGGG
ACGAAGGAAAACAAAAAGGACATTGATGGAAATGACAGTTATGTGGAACA
AATTGATAACTCCATAATCTCTTGACCTTGAGATGAAAATAAATTTACCA
GTAAGATGGATATAGATTCAGAATGAACTAacctttttgtttgatttgat
tcaaacataaaaatctGACTGGTTGGTTAACTGTATTTGCTCATCAACAC
TTTATTGACTTTTGttgaaagctttatgaaaaaGGATTTTGGGTTCAAGT
CTGTCATGCTCGAATGACATCAACATCAACTAGCCGAAATCTGATATGCC
CACAACTAATATTTAACCTCATTTTCACTATATCAATCATTTTTAGCAGC
CTCTTATCGCCTTTTATCGGCTTAATAGAaaagcctgttagacgaaaacc
gcctTTTTGTTGTACAAACGTTTAATAAACAAGCAAAAAGATTGGTATGT
TTGAAAGGTAATTGCTATGTCATAGGTGGTACCCTAGGTGGCATTGAAAA
TTCTTAATCGCAAAGACGTAGGTGCTGTCGAAATATATCAGACTGAGTTT
GATTATTACTCCAAAACATTACCTGTGATTATATAGTTGTTAATTGAGAT
GAGCGACGCAACACTTTTTTTGTACATCAGGTCCCACGCTATGAATTTGA
AAGTGGGGGGCAATGAATATAGAGTCTAAAGAGGCGCAACCAAAATcttt
tactttgcaaaaaagtgggggccATGGCCCTGTGCCCCCCCCTCCGGTGG
CGTGGGTCCTGTACATGTCTTTTCGTATCGTGGAATTGGTGCTGGATTAC
GTTAATCCTTCTTTGAAGGAGAAACGAAGCGTAACAGAAATCAAATTTAG
atgattattttcttatttttcagattttaaccACATCTTTTAATCCTTTT
AATCTTAATCCAACAATTATGATATACCTATTTCATCTTATTTGTATTTC
CTGTTGTCCTCAAAGTCAGAGGTGACCATTCTTTGATTAGCCTTTATGTT
ACTGTGAGCACCATTGTTTCgctttttttagatttaacctgttcaaacac
ccccttctcacagacccggtaggattttttcagccgtTATTTTCacaata
acggactgaaactcaatggggattgagaTTCCCATTTTTTTATGACCGGG
GATATAAAAGTCttttgtcagaaaattcagtgggaatgtgaaaatagcat
aatattttgcagtgaggattggtttatttgattattttcagtggggacaa
aaattagtgtataattttccattggggacaatattttggtcaatttttcc
agtgggaagggctTCCAGTGAGTCTGTGAGAAAGCTGTGTGTTCAAGATC
TCAAAGTTGTCTCATTATTTTCTATAAAACCGGAAAGTTTTTGCAAAAGG
TATGGGTATTTAGTAGCTTTGTGGGAATTTTTTTGACATTCTTCTCTCTT
TAATTGATTTCACagattttagaatttcaaaacTATTTATCAAACAGACC
TCAAAGAATTCCAGCCCCCTTTTTATTTTGGACCCTCCCTTTAATTGAAC
GTTAAAGGATATTTTTAAAACTTAGGATGggattttttcccttttttttt
tttttactgagGAGGtttaaaactaatttgaaaTTCTTAG Run BLAST on NCBI protein sequence of TCONS_00062177-protein >TCONS_00062177-protein ID=TCONS_00062177-protein|Name=TCONS_00062177-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MMIEKVDKAKYHFKKEIANNVRRFLIQLIFLGILIFTSTTIFFFVEECYF
HVPQPPTSYNQMCNQLCQNTKIINETQSNNTEIVNLFGNVTKFCVQAKCN
LEEHVSQRNCKLGPKNVFKWWGFVVTTIFTIGYGRTVAKSTLGRALTIVM
AIIGIPMASANVLFCGKAINNTIKYLIVCFENACLKRQKIVWLKRKVAAV
QIYLTISTILLHSVFYKMTTLQESSFFEIIYYVCVTMLTIGFGDVYPDTT
YLYQLSMVQLVIFTSLDVAFFYWTFSLLGSIIDFIRXSLDVAFFYWTFSL
LGSIIDFIRSLETDLGTKENKKDIDGNDSYVEQIDNSIIS Run BLAST on NCBI transcript from alignment at scaffold_362:338082..341145+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062177 ID=TCONS_00062177|Name=TCONS_00062177|organism=Clytia hemisphaerica|type=transcript|length=3064bp|location=Sequence derived from alignment at scaffold_362:338082..341145+ (Clytia hemisphaerica)
NGATGATGATCGAAAAAGTCGACAAAGCGAAGTatcatttcaaaaaagaa
attgcaaATAACGTCAGAAGATTTTTAATACAATTAATTTTCCTGGGGAT
CCTGATTTTCACATCGAcgacaattttcttttttgtggAAGAATGTTATT
TTCATGTTCCACAACCTCCAACAAGTTACAATCAAATGTGCAACCAGCTT
TGCCAAAATACTAAAATAATTAACGAAACACAGTCAAATAACACTGAGAT
TGTTAATTTGTTTGGTAACGTTACAAAGTTTTGCGTTCAAGCCAAATGTA
ATTTAGAGGAACATGTTTCACAAAGAAATTGCAAGCTTggtccaaaaaat
gttttcaaatggtGGGGATTTGTCGTGACAACAATTTTTACGATAGGTAA
GTTGTTCTAGATAACTTTATCATCttcaaaggttttgtttttaaataaga
gtgatatcgtttgcttactatgcaattttaattcacaaactTTTTCACGT
TGGATTGACGtgtatgtggagcaagattggccatttttgcttatatcgag
cacaatataacaattggcagacactgccctgatatgaaatatgtgtctga
tatgaaacgggaacacttatgtccATCGAATTTCAATGAGGATGAAAAGA
TAGTCAGTATCTCATTGAGATTGAAAttattgtagggtatttttccacca
gggacgaaattttggtcaaaagttTAAGTAGGGTGGGGCTCCCATCATCT
CTGAAACGAAGGAGTGCTATTTCGTATGCACCTTAGATTGAACCTTAAAT
TCGCTGTTTATTGTTTTATGGTATCTTTGAAAATAtaatctaatccattg
cattaATTTTCCTATTCTAGGTTATGGCAGAACCGTGGCAAAATCTACGC
TTGGCAGAGCTTTAACAATAGTGATGGCAATTATCGGTATTCCGATGGCT
TCTGccaatgttttgttttgtggtAAAGCTATCAACAACACAATCAAATA
TTTAATCGTATGCTTTGAAAACGCTTGCTTGAAACGCCAAAAAATTGTAT
GGCTTAAACGCAAGGTGGCAGCTGTTCAAATTTATTTGACAATATCAACT
ATATTGCTTCATTCTGTTTTCTACAAAATGACAACTTTGCAGGAAAGCAG
CTTCTTTGAGATAATCTATTACGTTTGTGTCACGATGTTGACTATAGGCT
TCGGCGATGTTTATCCAGACACCACTTATTTATACCAACTCTCAATGGTA
CAACTAGTTATTTTTACTTCACTGGACGTTGCATTTTTCTATTGGACTTT
CTCATTGTTGGGATCAATTATTGATTTTATACGATNTTCACTGGACGTAG
CATTTTTCTATTGGACTTTCTCATTGTTGGGATCAATTATTGATTTTATA
CGATCTTTAGAAACTGATTTGGGGACGAAGGAAAACAAAAAGGACATTGA
TGGAAATGACAGTTATGTGGAACAAATTGATAACTCCATAATCTCTTGAC
CTTGAGATGAAAATAAATTTACCAGTAAGATGGATATAGATTCAGAATGA
ACTAacctttttgtttgatttgattcaaacataaaaatctGACTGGTTGG
TTAACTGTATTTGCTCATCAACACTTTATTGACTTTTGttgaaagcttta
tgaaaaaGGATTTTGGGTTCAAGTCTGTCATGCTCGAATGACATCAACAT
CAACTAGCCGAAATCTGATATGCCCACAACTAATATTTAACCTCATTTTC
ACTATATCAATCATTTTTAGCAGCCTCTTATCGCCTTTTATCGGCTTAAT
AGAaaagcctgttagacgaaaaccgcctTTTTGTTGTACAAACGTTTAAT
AAACAAGCAAAAAGATTGGTATGTTTGAAAGGTAATTGCTATGTCATAGG
TGGTACCCTAGGTGGCATTGAAAATTCTTAATCGCAAAGACGTAGGTGCT
GTCGAAATATATCAGACTGAGTTTGATTATTACTCCAAAACATTACCTGT
GATTATATAGTTGTTAATTGAGATGAGCGACGCAACACTTTTTTTGTACA
TCAGGTCCCACGCTATGAATTTGAAAGTGGGGGGCAATGAATATAGAGTC
TAAAGAGGCGCAACCAAAATcttttactttgcaaaaaagtgggggccATG
GCCCTGTGCCCCCCCCTCCGGTGGCGTGGGTCCTGTACATGTCTTTTCGT
ATCGTGGAATTGGTGCTGGATTACGTTAATCCTTCTTTGAAGGAGAAACG
AAGCGTAACAGAAATCAAATTTAGatgattattttcttatttttcagatt
ttaaccACATCTTTTAATCCTTTTAATCTTAATCCAACAATTATGATATA
CCTATTTCATCTTATTTGTATTTCCTGTTGTCCTCAAAGTCAGAGGTGAC
CATTCTTTGATTAGCCTTTATGTTACTGTGAGCACCATTGTTTCgctttt
tttagatttaacctgttcaaacacccccttctcacagacccggtaggatt
ttttcagccgtTATTTTCacaataacggactgaaactcaatggggattga
gaTTCCCATTTTTTTATGACCGGGGATATAAAAGTCttttgtcagaaaat
tcagtgggaatgtgaaaatagcataatattttgcagtgaggattggttta
tttgattattttcagtggggacaaaaattagtgtataattttccattggg
gacaatattttggtcaatttttccagtgggaagggctTCCAGTGAGTCTG
TGAGAAAGCTGTGTGTTCAAGATCTCAAAGTTGTCTCATTATTTTCTATA
AAACCGGAAAGTTTTTGCAAAAGGTATGGGTATTTAGTAGCTTTGTGGGA
ATTTTTTTGACATTCTTCTCTCTTTAATTGATTTCACagattttagaatt
tcaaaacTATTTATCAAACAGACCTCAAAGAATTCCAGCCCCCTTTTTAT
TTTGGACCCTCCCTTTAATTGAACGTTAAAGGATATTTTTAAAACTTAGG
ATGggattttttcccttttttttttttttactgagGAGGtttaaaactaa
tttgaaaTTCTTAG Coding sequence (CDS) from alignment at scaffold_362:338082..341145+ >TCONS_00062177 ID=TCONS_00062177|Name=TCONS_00062177|organism=Clytia hemisphaerica|type=CDS|length=2046bp|location=Sequence derived from alignment at scaffold_362:338082..341145+ (Clytia hemisphaerica)
ATGATGATCGAAAAAGTCGACAAAGCGAAGTatcatttcaaaaaagaaat
tgcaaATAACGTCAGAAGATTTTTAATACAATTAATTTTCCTGGGGATCC
TGATTTTCACATCGAcgacaattttcttttttgtggAAGAATGTTATTTT
CATGTTCCACAACCTCCAACAAGTTACAATCAAATGTGCAACCAGCTTTG
CCAAAATACTAAAATAATTAACGAAACACAGTCAAATAACACTGAGATTG
TTAATTTGTTTGGTAACGTTACAAAGTTTTGCGTTCAAGCCAAATGTAAT
TTAGAGGAACATGTTTCACAAAGAAATTGCAAGCTTggtccaaaaaatgt
tttcaaatggtGGGGATTTGTCGTGACAACAATTTTTACGATAGGTTATG
GCAGAACCGTGGCAAAATCTACGCTTGGCAGAGCTTTAACAATAGTGATG
GCAATTATCGGTATTCCGATGGCTTCTGccaatgttttgttttgtggtAA
AGCTATCAACAACACAATCAAATATTTAATCGTATGCTTTGAAAACGCTT
GCTTGAAACGCCAAAAAATTGTATGGCTTAAACGCAAGGTGGCAGCTGTT
CAAATTTATTTGACAATATCAACTATATTGCTTCATTCTGTTTTCTACAA
AATGACAACTTTGCAGGAAAGCAGCTTCTTTGAGATAATCTATTACGTTT
GTGTCACGATGTTGACTATAGGCTTCGGCGATGTTTATCCAGACACCACT
TATTTATACCAACTCTCAATGGTACAACTAGTTATTTTTACTTCACTGGA
CGTTGCATTTTTCTATTGGACTTTCTCATTGTTGGGATCAATTATTGATT
TTATACGATNTTCACTGGACGTAGCATTTTTCTATTGGACTTTCTCATTG
TTGGGATCAATTATTGATTTTATACGATCTTTAGAAACTGATTTGGGGAC
GAAGGAAAACAAAAAGGACATTGATGGAAATGACAGTTATGTGGAACAAA
TTGATAACTCCATAATCTCTTGAATGATGATCGAAAAAGTCGACAAAGCG
AAGTatcatttcaaaaaagaaattgcaaATAACGTCAGAAGATTTTTAAT
ACAATTAATTTTCCTGGGGATCCTGATTTTCACATCGAcgacaattttct
tttttgtggAAGAATGTTATTTTCATGTTCCACAACCTCCAACAAGTTAC
AATCAAATGTGCAACCAGCTTTGCCAAAATACTAAAATAATTAACGAAAC
ACAGTCAAATAACACTGAGATTGTTAATTTGTTTGGTAACGTTACAAAGT
TTTGCGTTCAAGCCAAATGTAATTTAGAGGAACATGTTTCACAAAGAAAT
TGCAAGCTTggtccaaaaaatgttttcaaatggtGGGGATTTGTCGTGAC
AACAATTTTTACGATAGGTTATGGCAGAACCGTGGCAAAATCTACGCTTG
GCAGAGCTTTAACAATAGTGATGGCAATTATCGGTATTCCGATGGCTTCT
GccaatgttttgttttgtggtAAAGCTATCAACAACACAATCAAATATTT
AATCGTATGCTTTGAAAACGCTTGCTTGAAACGCCAAAAAATTGTATGGC
TTAAACGCAAGGTGGCAGCTGTTCAAATTTATTTGACAATATCAACTATA
TTGCTTCATTCTGTTTTCTACAAAATGACAACTTTGCAGGAAAGCAGCTT
CTTTGAGATAATCTATTACGTTTGTGTCACGATGTTGACTATAGGCTTCG
GCGATGTTTATCCAGACACCACTTATTTATACCAACTCTCAATGGTACAA
CTAGTTATTTTTACTTCACTGGACGTTGCATTTTTCTATTGGACTTTCTC
ATTGTTGGGATCAATTATTGATTTTATACGATNTTCACTGGACGTAGCAT
TTTTCTATTGGACTTTCTCATTGTTGGGATCAATTATTGATTTTATACGA
TCTTTAGAAACTGATTTGGGGACGAAGGAAAACAAAAAGGACATTGATGG
AAATGACAGTTATGTGGAACAAATTGATAACTCCATAATCTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062177-exon-scaffold_362-1491911889:338082..338477 | TCONS_00062177-exon-scaffold_362-1491911889:338082..338477 | Clytia hemisphaerica | exon |
| TCONS_00062177-exon-scaffold_362-1510915933:338082..338477 | TCONS_00062177-exon-scaffold_362-1510915933:338082..338477 | Clytia hemisphaerica | exon |
| TCONS_00062177-exon-scaffold_362-1575043694:338082..338477 | TCONS_00062177-exon-scaffold_362-1575043694:338082..338477 | Clytia hemisphaerica | exon |
| TCONS_00062177-exon-scaffold_362-1491911889:338952..341145 | TCONS_00062177-exon-scaffold_362-1491911889:338952..341145 | Clytia hemisphaerica | exon |
| TCONS_00062177-exon-scaffold_362-1510915933:338952..341145 | TCONS_00062177-exon-scaffold_362-1510915933:338952..341145 | Clytia hemisphaerica | exon |
| TCONS_00062177-exon-scaffold_362-1575043694:338952..341145 | TCONS_00062177-exon-scaffold_362-1575043694:338952..341145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:338082..341145 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071805 |
potassium ion transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
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