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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062180 ID=TCONS_00062180|Name=TCONS_00062180|organism=Clytia hemisphaerica|type=transcript|length=646bp
aCAGAGGTTGCATACAACTTTCAAAAAGCGAGCAATGTCAATTCTTTGGG
AACACCTTACGATCTTCATTCAATGATGCATTACAGTTCAACAGCTTTCG
CAAGAGCAGGGACACGAACAATTGTGACGAAGGATCGATCAAAACAATCG
ATTATCGATACTAATAATCGAATAAGTGGATTCAGTGAAATCGATATCAA
ACAAATCAACCTCATGTACAAGAACGAATGCGGAGGTGGTTCCGGTGGAA
ATGGCGGAAATGGTGGTGGAAACAATAACTGTCAAGATAAAGATGGAAAT
TGTGCATCATGGGCCCAACAAGGTTATTGTAGCAACTCTCAACACGGACC
CTGGATGAAAAGCAATTGCTGTAAATCATGCACAGGAACCGGTGGAGGAT
CGACTTGTGCTGGAGATCGCCATCAATATTGTTCAACTTGGGCTGCGCGT
GGTTATTGCACATCTCAACAACATTTAACTTACATGAGACAAAATTGTTG
TAAATCTTGTAGATTTTAATATCCAGAAATACATTTCTAAACTCTACGAT
GGGGAAGGTGTGTTTGTGGTTTAATTCATTTTTAGGTAACCAAATCATGA
CATCTAGCCCTCCCAAAAATCTTTCTCtcgtttttccaaaattttg Run BLAST on NCBI protein sequence of TCONS_00062180-protein >TCONS_00062180-protein ID=TCONS_00062180-protein|Name=TCONS_00062180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
TEVAYNFQKASNVNSLGTPYDLHSMMHYSSTAFARAGTRTIVTKDRSKQS
IIDTNNRISGFSEIDIKQINLMYKNECGGGSGGNGGNGGGNNNCQDKDGN
CASWAQQGYCSNSQHGPWMKSNCCKSCTGTGGGSTCAGDRHQYCSTWAAR
GYCTSQQHLTYMRQNCCKSCRF Run BLAST on NCBI transcript from alignment at scaffold_362:352743..355417+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062180 ID=TCONS_00062180|Name=TCONS_00062180|organism=Clytia hemisphaerica|type=transcript|length=2675bp|location=Sequence derived from alignment at scaffold_362:352743..355417+ (Clytia hemisphaerica)
aCAGAGGTTGCATACAACTTTCAAAAAGCGAGCAATGTCAATTCTTTGGG
AACACCTTACGATCTTCATTCAATGATGCATTACAGGTATGGCTGTATTT
ACACTACAAAGAACGGTTGCATTTACAATNAGATACCAGCAGCCTATTAC
TATTAGTTTCCGAGTAGGACGCGTGCACAGGTGCTTTCTGACGTCGAAAC
TTTAAAGtacactcatttttgctatcatACGGAAACCACTCTTAAAAGAA
ATACTCTTGAATGTGACTGACATGGTTTTCACATGACAGGACGAAATATA
GGCAAGGATATTCGAGACATTCTTTACTATANTAAGTGAGACCGCTATTT
GCTTTTTCTCTACAATATCTTATATATTTAGTGCTTTGAATGTCTGTTTC
CAGGTCATTATCCACCTCCTCGTAATGAATGAATGTTTATTGTCATCTTT
TGTCTTATCTCTAGAATAATCTCTCCCAGCcggcaaaaaaacgtttaaaa
aacgtttaaaaaacgtttttcacaacgtttggaaaacgttttttttcagg
ttgtatttGTCGCACTTTACAACGTTTTTTCACAACGTCCCTTCACAACG
taatttaaacctaaaaaaaacgttttgaaaacgttgtgtgccagctggct
ttaactttttgactttcAGATAAATTTTAGGAGTAAAATTAGAGTTGAAT
GCCTCCTAAGCTATTATCTGATTTCGTACTCGAATACTACTCATGGCTAG
TTATTCAGGCGCTTGTCTAATGAGTGGATAACATTCTTTCTAGGCCTGTG
TTAGGCTGGTTCATTGAGTTCATTCATTGATTCATTTGTCCGAGACTTTG
GGTAGCCTGTTTCATTTTCTTATGGTTTAGAAATACAATGATTGTATTAA
CCTCTACccattcaaattttaaatccAACTCTAATGAAACTTTCAGATCT
Ttcatataaaacttactaatcaagctaattacaggtttctaaaactcaaa
atcacaaagacgggggtaactctcgggacgggaattttatacacgataca
catcccctatatcaaaaaattcaaaggggAAGAGGCGTGCAGCTTAATAA
CACCTCCGAAAATCTTTATTCTCTCTACTAGTTCAACAGCTTTCGCAAGA
GCAGGGACACGAACAATTGTGACGAAGGATCGATCAAAACAATCGATTAT
CGATACTAATAATCGAATAAGTGGATTCAGTGAAATCGATATCAAACAAA
TCAACCTCATGTACAAGAACGAATGCGGAGGTATCAAGTGCcttgaattt
tctattttaattgcattctaGATTGCAAACCTGGtttttatataagcaaa
aatccTTGCTTTAGATTCGTACagattttatgaaactatatgGTTTGTGA
TTTTGGAGCTATACGTTTCTTtctaaacaatttttgaagctttctgaggg
ttctttacatttttaatttcaaagcattgaaatttccttgaatttgaaat
atttcttatcTCCATACTTAGGAATTACAATGTTGCAACGTGTATAACAT
ATTTTTTCCTCCCAATATTCTCAGGTGGTTCCGGTGGAAATGGCGGAAAT
GGTGGTGGAAACAATAACTGTCAAGATAAAGATGGAAATTGTGCATCATG
GGCCCAACAAGGTTATTGTAGCAACTCTCAACACGGACCCTGGATGAAAA
GCAATTGCTGTAAATCATGCACAGGTAAGTTCACTACCTTTTAAAAAAAC
TCTTAGACTTAGGTATTTGCAAATTAATTAGGAGAAGACTTGGATAAATT
aggttttttataatggaatatgTTTATTAGGTATTCTAAAGTAGAAGATT
CTAAAATGTTACGTAACAGAAGAAATGAAATTAAAGCTCGTCAAGAATTT
acatttctttgaaaaagtcattttcaaatttcgaaaagtcaaaaattcag
ctaaaaatatattttagacCTTGAGAAGGTCGAGTTCTGAAAGTCTAGCC
CCCATGGCGCAATTTTCAACCTTTCAATATAAAGAACTATTGTTTATTTT
AACAAAATGATTCAGATCCTCATCATTAAGCCAATACAAGTTGCAATACT
TAGCCAATCTTTTCACTCCGATATTCATGACATAATGACTTGTAAGGAAC
ccgggggcactcatatggtccgacccaaAATTACTGTATGTAAGGGTCAG
AAGCGTTCGGTaaaatgtactgtaagggtaccttttcactgtAAGGGCAG
ATGCTGTCGTTTAGaaatcaagtgaaaaataagaaatcacTCCTAATAGT
CTGTTACTAGTCTTTTTGTTGTTGATGAATTCAAACGTGACAAGCAGTCA
TTTTTGGGTGCTtctgtataaaacattacgtcataaatatcatgaatttc
tGCTTTACTACCAGGAACCGGTGGAGGATCGACTTGTGCTGGAGATCGCC
ATCAATATTGTTCAACTTGGGCTGCGCGTGGTTATTGCACATCTCAACAA
CATTTAACTTACATGAGACAAAATTGTTGTAAATCTTGTAGATTTTAATA
TCCAGAAATACATTTCTAAACTCTACGATGGGGAAGGTGTGTTTGTGGTT
TAATTCATTTTTAGGTAACCAAATCATGACATCTAGCCCTCCCAAAAATC
TTTCTCtcgtttttccaaaattttg Coding sequence (CDS) from alignment at scaffold_362:352743..355417+ >TCONS_00062180 ID=TCONS_00062180|Name=TCONS_00062180|organism=Clytia hemisphaerica|type=CDS|length=2076bp|location=Sequence derived from alignment at scaffold_362:352743..355417+ (Clytia hemisphaerica)
aCAGAGGTTGCATACAACTTTCAAAAAGCGAGCAATGTCAATTCTTTGGG
AACACCTTACGATCTTCATTCAATGATGCATTACAGTTCAACAGCTTTCG
CAAGAGCAGGGACACGAACAATTGTGACGAAGGATCGATCAAAACAATCG
ATTATCGATACTAATAATCGAATAAGTGGATTCAGTGAAATCGATATCAA
ACAAATCAACCTCATGTACAAGAACGAATGCGGAGGTGGTTCCGGTGGAA
ATGGCGGAAATGGTGGTGGAAACAATAACTGTCAAGATAAAGATGGAAAT
TGTGCATCATGGGCCCAACAAGGTTATTGTAGCAACTCTCAACACGGACC
CTGGATGAAAAGCAATTGCTGTAAATCATGCACAGGAACCGGTGGAGGAT
CGACTTGTGCTGGAGATCGCCATCAATATTGTTCAACTTGGGCTGCGCGT
GGTTATTGCACATCTCAACAACATTTAACTTACATGAGACAAAATTGTTG
TAAATCTTGTAGATTTTAAaCAGAGGTTGCATACAACTTTCAAAAAGCGA
GCAATGTCAATTCTTTGGGAACACCTTACGATCTTCATTCAATGATGCAT
TACAGTTCAACAGCTTTCGCAAGAGCAGGGACACGAACAATTGTGACGAA
GGATCGATCAAAACAATCGATTATCGATACTAATAATCGAATAAGTGGAT
TCAGTGAAATCGATATCAAACAAATCAACCTCATGTACAAGAACGAATGC
GGAGGTGGTTCCGGTGGAAATGGCGGAAATGGTGGTGGAAACAATAACTG
TCAAGATAAAGATGGAAATTGTGCATCATGGGCCCAACAAGGTTATTGTA
GCAACTCTCAACACGGACCCTGGATGAAAAGCAATTGCTGTAAATCATGC
ACAGGAACCGGTGGAGGATCGACTTGTGCTGGAGATCGCCATCAATATTG
TTCAACTTGGGCTGCGCGTGGTTATTGCACATCTCAACAACATTTAACTT
ACATGAGACAAAATTGTTGTAAATCTTGTAGATTTTAAaCAGAGGTTGCA
TACAACTTTCAAAAAGCGAGCAATGTCAATTCTTTGGGAACACCTTACGA
TCTTCATTCAATGATGCATTACAGTTCAACAGCTTTCGCAAGAGCAGGGA
CACGAACAATTGTGACGAAGGATCGATCAAAACAATCGATTATCGATACT
AATAATCGAATAAGTGGATTCAGTGAAATCGATATCAAACAAATCAACCT
CATGTACAAGAACGAATGCGGAGGTGGTTCCGGTGGAAATGGCGGAAATG
GTGGTGGAAACAATAACTGTCAAGATAAAGATGGAAATTGTGCATCATGG
GCCCAACAAGGTTATTGTAGCAACTCTCAACACGGACCCTGGATGAAAAG
CAATTGCTGTAAATCATGCACAGGAACCGGTGGAGGATCGACTTGTGCTG
GAGATCGCCATCAATATTGTTCAACTTGGGCTGCGCGTGGTTATTGCACA
TCTCAACAACATTTAACTTACATGAGACAAAATTGTTGTAAATCTTGTAG
ATTTTAAaCAGAGGTTGCATACAACTTTCAAAAAGCGAGCAATGTCAATT
CTTTGGGAACACCTTACGATCTTCATTCAATGATGCATTACAGTTCAACA
GCTTTCGCAAGAGCAGGGACACGAACAATTGTGACGAAGGATCGATCAAA
ACAATCGATTATCGATACTAATAATCGAATAAGTGGATTCAGTGAAATCG
ATATCAAACAAATCAACCTCATGTACAAGAACGAATGCGGAGGTGGTTCC
GGTGGAAATGGCGGAAATGGTGGTGGAAACAATAACTGTCAAGATAAAGA
TGGAAATTGTGCATCATGGGCCCAACAAGGTTATTGTAGCAACTCTCAAC
ACGGACCCTGGATGAAAAGCAATTGCTGTAAATCATGCACAGGAACCGGT
GGAGGATCGACTTGTGCTGGAGATCGCCATCAATATTGTTCAACTTGGGC
TGCGCGTGGTTATTGCACATCTCAACAACATTTAACTTACATGAGACAAA
ATTGTTGTAAATCTTGTAGATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062180-exon-scaffold_362-1491911889:352743..352828 | TCONS_00062180-exon-scaffold_362-1491911889:352743..352828 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1510915933:352743..352828 | TCONS_00062180-exon-scaffold_362-1510915933:352743..352828 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1575043694:352743..352828 | TCONS_00062180-exon-scaffold_362-1575043694:352743..352828 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1491911889:353874..354022 | TCONS_00062180-exon-scaffold_362-1491911889:353874..354022 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1510915933:353874..354022 | TCONS_00062180-exon-scaffold_362-1510915933:353874..354022 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1575043694:353874..354022 | TCONS_00062180-exon-scaffold_362-1575043694:353874..354022 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1491911889:354317..354466 | TCONS_00062180-exon-scaffold_362-1491911889:354317..354466 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1510915933:354317..354466 | TCONS_00062180-exon-scaffold_362-1510915933:354317..354466 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1575043694:354317..354466 | TCONS_00062180-exon-scaffold_362-1575043694:354317..354466 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1491911889:355157..355417 | TCONS_00062180-exon-scaffold_362-1491911889:355157..355417 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1510915933:355157..355417 | TCONS_00062180-exon-scaffold_362-1510915933:355157..355417 | Clytia hemisphaerica | exon |
| TCONS_00062180-exon-scaffold_362-1575043694:355157..355417 | TCONS_00062180-exon-scaffold_362-1575043694:355157..355417 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:352743..355417 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004222 | metalloendopeptidase activity |
| GO:0008237 | metallopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
| molecular_function |
GO:0008237 |
metallopeptidase activity |
Blast
The following BLAST results are available for this feature:
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