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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062192 ID=TCONS_00062192|Name=TCONS_00062192|organism=Clytia hemisphaerica|type=transcript|length=1721bp
TAAAGAAATTAGAGACAAAGATGTTAAAAAATAGCTTGGTAACAAGCGAG
CCTATCATTTTTCTATATTCATCAATTTATTACATCAATTTGTCAATCCT
GCCGCAACTGGTCTTGCAGAAAGTCTGTTTGGAGAAATATGATAATGGTC
TTGCTGGAAATGGTACTACATCATCGTCGTCATTGTGTGAAGAAAAGTCA
TCAACGGTTATTACAAACGATATGCAAAAGgaatCGTCACTTTGGTGGTT
TGCCATTCTCGCTTCATCCCAAATACCTTCAATTCTCACTGTCCTTATTT
GGGGACCCATAAGCGACGTCATCGGCCGCAAGAAGGCCATCCTTTTGGTC
CCCATCATGAGTATCTTACAAAACATTATTTTCCTCTTATGTTCATACTA
CATGAATTCATCCATCATTTACCTTTGTGTTGGAATGTTCATGGCCTGTT
TATTCGGCGAATTCCCCGGGGTACTGGCTCTTTCGTGCGCCTTCATTGCA
GATGTGACAACTGGACGAAAAGCAAAATCACGGACCTCGAGGATGGCTTT
GGTGGATTGTGCTGTTAATTTGGCTGGAGTTCCAGCAGGACTCTTTGCAG
GACAATTACTAAAGCATTTAGGATTCACAGCAGTGTTTGGACTTTCGATC
GGTTTCAATGTGATAATCCTGTTATACATCATCTTTCTTCTCCCAGACAC
AAGAGCTATACAAATAGCTAACGAATTAGACTTCAAACAGTCGATGGAAA
TAAAGCCTGGTAAAAAGTCAACAACAAAAGATATTGTTATCTCCAATAAA
GCCATTGATATTGATGTTACAGATATCGAATCTCCGGAAGTAAACGCGAG
TGCTAAGCCGGCTACAAATCCTACTGATAATGACGTAACCGACACATCTA
ACCAAGAAACGAGAAAATTGAGCTGTGACCTATTTATGCCACACAAGCAA
ATCTATCTTGTATACAAACTACTCTCATCCAAAGGGATACGTCATTTGAT
CTTACCGCCTTTACTAGCATTCACATTCATCATTTACGCTTTTGTTGGTG
AACTGACCCTGACATCATTGTATATCAAGAACGAACCTCTTGCATTGGAA
CCTGATTTCATAGGCTATTACTATGCCTCACAGGCTACTATTCGATGCTT
TGGTTGCCTGGCAACAACACAAATAGCGACTCGAATTCTGAAAGCTTCAG
ATATTAATGTCTTGCTATTTGGCGTTGTTAGTCAGATGGTATCCTACATT
TTGATTGGCCTTTCCAAGAGTGAACTTTCAGTTTTTATGGCAAATCTATC
TAGTTTCGGTATCCCAGTAGCTTTAACAATATCTAGAAGTTATACTTCAA
AACAAGTCCCACCTGAACAGGTAGGAACATTAATGGCTGCCTTTGAATCC
ATAGATGCTCTTTCGTTTACGACAAATTTGATGTCTATCGAAGTTTACAA
TGCAACTCTCAGTAAATATGCCGGAGCTGTCTGGTTCTTCTTGGCTGGAT
GTTCATTTATTGGATTTGCTTTGACATTGGGAAATAAATTCTATCTTCTT
AAGAAAAAGAAATCTGCTGATATAAACGGAAATACGCCAGGCGTGACAAC
TAATAAAGCAGTGTCAGCTTCGGATGCTTGAATCTGTTTGAGTTTTAATA
GTTTTTTTAGAGTAGGTTCTAGTGGTTGCTTCTAGGCTATATATTACaag
ccttattcgagcaaatttgag Run BLAST on NCBI protein sequence of TCONS_00062192-protein >TCONS_00062192-protein ID=TCONS_00062192-protein|Name=TCONS_00062192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=542bp
KKLETKMLKNSLVTSEPIIFLYSSIYYINLSILPQLVLQKVCLEKYDNGL
AGNGTTSSSSLCEEKSSTVITNDMQKESSLWWFAILASSQIPSILTVLIW
GPISDVIGRKKAILLVPIMSILQNIIFLLCSYYMNSSIIYLCVGMFMACL
FGEFPGVLALSCAFIADVTTGRKAKSRTSRMALVDCAVNLAGVPAGLFAG
QLLKHLGFTAVFGLSIGFNVIILLYIIFLLPDTRAIQIANELDFKQSMEI
KPGKKSTTKDIVISNKAIDIDVTDIESPEVNASAKPATNPTDNDVTDTSN
QETRKLSCDLFMPHKQIYLVYKLLSSKGIRHLILPPLLAFTFIIYAFVGE
LTLTSLYIKNEPLALEPDFIGYYYASQATIRCFGCLATTQIATRILKASD
INVLLFGVVSQMVSYILIGLSKSELSVFMANLSSFGIPVALTISRSYTSK
QVPPEQVGTLMAAFESIDALSFTTNLMSIEVYNATLSKYAGAVWFFLAGC
SFIGFALTLGNKFYLLKKKKSADINGNTPGVTTNKAVSASDA Run BLAST on NCBI transcript from alignment at scaffold_362:604504..607018+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062192 ID=TCONS_00062192|Name=TCONS_00062192|organism=Clytia hemisphaerica|type=transcript|length=2515bp|location=Sequence derived from alignment at scaffold_362:604504..607018+ (Clytia hemisphaerica)
TAAAGAAATTAGAGACAAAGATGTTAAAAAATAGCTTGGTAACAAGCGAG
CCTATCATTTTTCTATATTCATCAATTTATTACATCAATTTGTCNTTCAA
ATTCTAATGATTTCAGGTTATATAAAGAAATTAGAGAAAAAGATGTTCAA
AAATAGCTTGGTAACAAGCGAGCCTATCATTTTTCTATATTCATCAATTT
ATTACATCAATTTGTCAATCCTGCCGCAACTGGTCTTGCAGAAAGTCTGT
TTGGAGAAATATGATAATGGTCTTGCTGGAAATGGTACTACATCATCGTC
GTCATTGTGTGAAGAAAAGTCATCAACGGTTATTACAAACGATATGCAAA
AGGTAAAACAGTTACAGtgtgtattttttatttagctttacaggtttgca
ggccaccgtgaagacacattGGCTTCTATAAATtgctcgtactttttaca
attgatatttccggactttccattttgtgttgtctcCCTTGAGTTTAGCA
TTCAtttttcggcttccttacaccattctttgattatttgtctttcattt
ttggttaaatcctctgtcactcggTAAGGAGGTTAAGGTAAGGTTAGTGT
TCAAAGTAATTTATGCACCCCTAAAAGGACATATTTGTACTTTATAAAGA
AACAAAACGGGTTCCCAATTAGCTATAACAAAGTGAACTTGTGGTTAGAA
ATCATTCAATAGACGTCCCCTTCTTATGCCCCCTCGGACctttattaaga
aagctcccaaccctactgGTGCCCCTACtaggatccctacgggatcctaa
gttagGTCTCAGGGTACGGATACGCCGAAGAAGGCCTttggccttatatt
gtgactctcgagctccaaccctaaccctaactgataataaccgaaccccc
gtctaggtccacagattgaaaaatttcacttgcatcctggcgTCAAAAAT
ATCTGTCTAACTATTTTCATTAGCAGGTAAAATATCGACATGAGCAATCT
AACTactgtcttttttttttcaaggaatCGTCACTTTGGTGGTTTGCCAT
TCTCGCTTCATCCCAAATACCTTCAATTCTCACTGTCCTTATTTGGGGAC
CCATAAGCGACGTCATCGGCCGCAAGAAGGCCATCCTTTTGGTCCCCATC
ATGAGTATCTTACAAAACATTATTTTCCTCTTATGTTCATACTACATGAA
TTCATCCATCATTTACCTTTGTGTTGGAATGTTCATGGCCTGTTTATTCG
GCGAATTCCCCGGGGTACTGGCTCTTTCGTGCGCCTTCATTGCAGATGTG
ACAACTGGACGAAAAGCAAAATCACGGACCTCGAGGATGGCTTTGGTGGA
TTGTGCTGTTAATTTGGCTGGAGTTCCAGCAGGACTCTTTGCAGGACAAT
TACTAAAGCATTTAGGATTCACAGCAGTGTTTGGACTTTCGATCGGTTTC
AATGTGATAATCCTGTTATACATCATCTTTCTTCTCCCAGACACAAGAGC
TATACAAATAGCTAACGAATTAGACTTCAAACAGTCGATGGAAATAAAGC
CTGGTAAAAAGTCAACAACAAAAGATATTGTTATCTCCAATAAAGCCATT
GATATTGATGTTACAGATATCGAATCTCCGGAAGTAAACGCGAGTGCTAA
GCCGGCTACAAATCCTACTGATAATGACGTAACCGACACATCTAACCAAG
AAACGAGAAAATTGAGCTGTGACCTATTTATGCCACACAAGCAAATCTAT
CTTGTATACAAACTACTCTCATCCAAAGGGATACGTCATTTGATCTTACC
GCCTTTACTAGCATTCACATTCATCATTTACGCTTTTGTTGGTGAACTGA
CCCTGACATCATTGTATATCAAGAACGAACCTCTTGCATTGGAACCTGAT
TTCATAGGCTATTACTATGCCTCACAGGCTACTATTCGATGCTTTGGTTG
CCTGGCAACAACACAAATAGCGACTCGAATTCTGAAAGCTTCAGATATTA
ATGTCTTGCTATTTGGCGTTGTTAGTCAGATGGTATCCTACATTTTGATT
GGCCTTTCCAAGAGTGAACTTTCAGTTTTTATGGCAAATCTATCTAGTTT
CGGTATCCCAGTAGCTTTAACAATATCTAGAAGTTATACTTCAAAACAAG
TCCCACCTGAACAGGTAGGAACATTAATGGCTGCCTTTGAATCCATAGAT
GCTCTTTCGTTTACGACAAATTTGATGTCTATCGAAGTTTACAATGCAAC
TCTCAGTAAATATGCCGGAGCTGTCTGGTTCTTCTTGGCTGGATGTTCAT
TTATTGGATTTGCTTTGACATTGGGAAATAAATTCTATCTTCTTAAGAAA
AAGAAATCTGCTGATATAAACGGAAATACGCCAGGCGTGACAACTAATAA
AGCAGTGTCAGCTTCGGATGCTTGAATCTGTTTGAGTTTTAATAGTTTTT
TTAGAGTAGGTTCTAGTGGTTGCTTCTAGGCTATATATTACaagccttat
tcgagcaaatttgag Coding sequence (CDS) from alignment at scaffold_362:604504..607018+ >TCONS_00062192 ID=TCONS_00062192|Name=TCONS_00062192|organism=Clytia hemisphaerica|type=CDS|length=4887bp|location=Sequence derived from alignment at scaffold_362:604504..607018+ (Clytia hemisphaerica)
AAGAAATTAGAGACAAAGATGTTAAAAAATAGCTTGGTAACAAGCGAGCC
TATCATTTTTCTATATTCATCAATTTATTACATCAATTTGTCAATCCTGC
CGCAACTGGTCTTGCAGAAAGTCTGTTTGGAGAAATATGATAATGGTCTT
GCTGGAAATGGTACTACATCATCGTCGTCATTGTGTGAAGAAAAGTCATC
AACGGTTATTACAAACGATATGCAAAAGgaatCGTCACTTTGGTGGTTTG
CCATTCTCGCTTCATCCCAAATACCTTCAATTCTCACTGTCCTTATTTGG
GGACCCATAAGCGACGTCATCGGCCGCAAGAAGGCCATCCTTTTGGTCCC
CATCATGAGTATCTTACAAAACATTATTTTCCTCTTATGTTCATACTACA
TGAATTCATCCATCATTTACCTTTGTGTTGGAATGTTCATGGCCTGTTTA
TTCGGCGAATTCCCCGGGGTACTGGCTCTTTCGTGCGCCTTCATTGCAGA
TGTGACAACTGGACGAAAAGCAAAATCACGGACCTCGAGGATGGCTTTGG
TGGATTGTGCTGTTAATTTGGCTGGAGTTCCAGCAGGACTCTTTGCAGGA
CAATTACTAAAGCATTTAGGATTCACAGCAGTGTTTGGACTTTCGATCGG
TTTCAATGTGATAATCCTGTTATACATCATCTTTCTTCTCCCAGACACAA
GAGCTATACAAATAGCTAACGAATTAGACTTCAAACAGTCGATGGAAATA
AAGCCTGGTAAAAAGTCAACAACAAAAGATATTGTTATCTCCAATAAAGC
CATTGATATTGATGTTACAGATATCGAATCTCCGGAAGTAAACGCGAGTG
CTAAGCCGGCTACAAATCCTACTGATAATGACGTAACCGACACATCTAAC
CAAGAAACGAGAAAATTGAGCTGTGACCTATTTATGCCACACAAGCAAAT
CTATCTTGTATACAAACTACTCTCATCCAAAGGGATACGTCATTTGATCT
TACCGCCTTTACTAGCATTCACATTCATCATTTACGCTTTTGTTGGTGAA
CTGACCCTGACATCATTGTATATCAAGAACGAACCTCTTGCATTGGAACC
TGATTTCATAGGCTATTACTATGCCTCACAGGCTACTATTCGATGCTTTG
GTTGCCTGGCAACAACACAAATAGCGACTCGAATTCTGAAAGCTTCAGAT
ATTAATGTCTTGCTATTTGGCGTTGTTAGTCAGATGGTATCCTACATTTT
GATTGGCCTTTCCAAGAGTGAACTTTCAGTTTTTATGGCAAATCTATCTA
GTTTCGGTATCCCAGTAGCTTTAACAATATCTAGAAGTTATACTTCAAAA
CAAGTCCCACCTGAACAGGTAGGAACATTAATGGCTGCCTTTGAATCCAT
AGATGCTCTTTCGTTTACGACAAATTTGATGTCTATCGAAGTTTACAATG
CAACTCTCAGTAAATATGCCGGAGCTGTCTGGTTCTTCTTGGCTGGATGT
TCATTTATTGGATTTGCTTTGACATTGGGAAATAAATTCTATCTTCTTAA
GAAAAAGAAATCTGCTGATATAAACGGAAATACGCCAGGCGTGACAACTA
ATAAAGCAGTGTCAGCTTCGGATGCTTGAAAGAAATTAGAGACAAAGATG
TTAAAAAATAGCTTGGTAACAAGCGAGCCTATCATTTTTCTATATTCATC
AATTTATTACATCAATTTGTCAATCCTGCCGCAACTGGTCTTGCAGAAAG
TCTGTTTGGAGAAATATGATAATGGTCTTGCTGGAAATGGTACTACATCA
TCGTCGTCATTGTGTGAAGAAAAGTCATCAACGGTTATTACAAACGATAT
GCAAAAGgaatCGTCACTTTGGTGGTTTGCCATTCTCGCTTCATCCCAAA
TACCTTCAATTCTCACTGTCCTTATTTGGGGACCCATAAGCGACGTCATC
GGCCGCAAGAAGGCCATCCTTTTGGTCCCCATCATGAGTATCTTACAAAA
CATTATTTTCCTCTTATGTTCATACTACATGAATTCATCCATCATTTACC
TTTGTGTTGGAATGTTCATGGCCTGTTTATTCGGCGAATTCCCCGGGGTA
CTGGCTCTTTCGTGCGCCTTCATTGCAGATGTGACAACTGGACGAAAAGC
AAAATCACGGACCTCGAGGATGGCTTTGGTGGATTGTGCTGTTAATTTGG
CTGGAGTTCCAGCAGGACTCTTTGCAGGACAATTACTAAAGCATTTAGGA
TTCACAGCAGTGTTTGGACTTTCGATCGGTTTCAATGTGATAATCCTGTT
ATACATCATCTTTCTTCTCCCAGACACAAGAGCTATACAAATAGCTAACG
AATTAGACTTCAAACAGTCGATGGAAATAAAGCCTGGTAAAAAGTCAACA
ACAAAAGATATTGTTATCTCCAATAAAGCCATTGATATTGATGTTACAGA
TATCGAATCTCCGGAAGTAAACGCGAGTGCTAAGCCGGCTACAAATCCTA
CTGATAATGACGTAACCGACACATCTAACCAAGAAACGAGAAAATTGAGC
TGTGACCTATTTATGCCACACAAGCAAATCTATCTTGTATACAAACTACT
CTCATCCAAAGGGATACGTCATTTGATCTTACCGCCTTTACTAGCATTCA
CATTCATCATTTACGCTTTTGTTGGTGAACTGACCCTGACATCATTGTAT
ATCAAGAACGAACCTCTTGCATTGGAACCTGATTTCATAGGCTATTACTA
TGCCTCACAGGCTACTATTCGATGCTTTGGTTGCCTGGCAACAACACAAA
TAGCGACTCGAATTCTGAAAGCTTCAGATATTAATGTCTTGCTATTTGGC
GTTGTTAGTCAGATGGTATCCTACATTTTGATTGGCCTTTCCAAGAGTGA
ACTTTCAGTTTTTATGGCAAATCTATCTAGTTTCGGTATCCCAGTAGCTT
TAACAATATCTAGAAGTTATACTTCAAAACAAGTCCCACCTGAACAGGTA
GGAACATTAATGGCTGCCTTTGAATCCATAGATGCTCTTTCGTTTACGAC
AAATTTGATGTCTATCGAAGTTTACAATGCAACTCTCAGTAAATATGCCG
GAGCTGTCTGGTTCTTCTTGGCTGGATGTTCATTTATTGGATTTGCTTTG
ACATTGGGAAATAAATTCTATCTTCTTAAGAAAAAGAAATCTGCTGATAT
AAACGGAAATACGCCAGGCGTGACAACTAATAAAGCAGTGTCAGCTTCGG
ATGCTTGAAAGAAATTAGAGACAAAGATGTTAAAAAATAGCTTGGTAACA
AGCGAGCCTATCATTTTTCTATATTCATCAATTTATTACATCAATTTGTC
AATCCTGCCGCAACTGGTCTTGCAGAAAGTCTGTTTGGAGAAATATGATA
ATGGTCTTGCTGGAAATGGTACTACATCATCGTCGTCATTGTGTGAAGAA
AAGTCATCAACGGTTATTACAAACGATATGCAAAAGgaatCGTCACTTTG
GTGGTTTGCCATTCTCGCTTCATCCCAAATACCTTCAATTCTCACTGTCC
TTATTTGGGGACCCATAAGCGACGTCATCGGCCGCAAGAAGGCCATCCTT
TTGGTCCCCATCATGAGTATCTTACAAAACATTATTTTCCTCTTATGTTC
ATACTACATGAATTCATCCATCATTTACCTTTGTGTTGGAATGTTCATGG
CCTGTTTATTCGGCGAATTCCCCGGGGTACTGGCTCTTTCGTGCGCCTTC
ATTGCAGATGTGACAACTGGACGAAAAGCAAAATCACGGACCTCGAGGAT
GGCTTTGGTGGATTGTGCTGTTAATTTGGCTGGAGTTCCAGCAGGACTCT
TTGCAGGACAATTACTAAAGCATTTAGGATTCACAGCAGTGTTTGGACTT
TCGATCGGTTTCAATGTGATAATCCTGTTATACATCATCTTTCTTCTCCC
AGACACAAGAGCTATACAAATAGCTAACGAATTAGACTTCAAACAGTCGA
TGGAAATAAAGCCTGGTAAAAAGTCAACAACAAAAGATATTGTTATCTCC
AATAAAGCCATTGATATTGATGTTACAGATATCGAATCTCCGGAAGTAAA
CGCGAGTGCTAAGCCGGCTACAAATCCTACTGATAATGACGTAACCGACA
CATCTAACCAAGAAACGAGAAAATTGAGCTGTGACCTATTTATGCCACAC
AAGCAAATCTATCTTGTATACAAACTACTCTCATCCAAAGGGATACGTCA
TTTGATCTTACCGCCTTTACTAGCATTCACATTCATCATTTACGCTTTTG
TTGGTGAACTGACCCTGACATCATTGTATATCAAGAACGAACCTCTTGCA
TTGGAACCTGATTTCATAGGCTATTACTATGCCTCACAGGCTACTATTCG
ATGCTTTGGTTGCCTGGCAACAACACAAATAGCGACTCGAATTCTGAAAG
CTTCAGATATTAATGTCTTGCTATTTGGCGTTGTTAGTCAGATGGTATCC
TACATTTTGATTGGCCTTTCCAAGAGTGAACTTTCAGTTTTTATGGCAAA
TCTATCTAGTTTCGGTATCCCAGTAGCTTTAACAATATCTAGAAGTTATA
CTTCAAAACAAGTCCCACCTGAACAGGTAGGAACATTAATGGCTGCCTTT
GAATCCATAGATGCTCTTTCGTTTACGACAAATTTGATGTCTATCGAAGT
TTACAATGCAACTCTCAGTAAATATGCCGGAGCTGTCTGGTTCTTCTTGG
CTGGATGTTCATTTATTGGATTTGCTTTGACATTGGGAAATAAATTCTAT
CTTCTTAAGAAAAAGAAATCTGCTGATATAAACGGAAATACGCCAGGCGT
GACAACTAATAAAGCAGTGTCAGCTTCGGATGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062192-exon-scaffold_362-1491911889:604504..604586 | TCONS_00062192-exon-scaffold_362-1491911889:604504..604586 | Clytia hemisphaerica | exon |
| TCONS_00062192-exon-scaffold_362-1510915933:604504..604586 | TCONS_00062192-exon-scaffold_362-1510915933:604504..604586 | Clytia hemisphaerica | exon |
| TCONS_00062192-exon-scaffold_362-1575043694:604504..604586 | TCONS_00062192-exon-scaffold_362-1575043694:604504..604586 | Clytia hemisphaerica | exon |
| TCONS_00062192-exon-scaffold_362-1491911889:604709..604855 | TCONS_00062192-exon-scaffold_362-1491911889:604709..604855 | Clytia hemisphaerica | exon |
| TCONS_00062192-exon-scaffold_362-1510915933:604709..604855 | TCONS_00062192-exon-scaffold_362-1510915933:604709..604855 | Clytia hemisphaerica | exon |
| TCONS_00062192-exon-scaffold_362-1575043694:604709..604855 | TCONS_00062192-exon-scaffold_362-1575043694:604709..604855 | Clytia hemisphaerica | exon |
| TCONS_00062192-exon-scaffold_362-1491911889:605528..607018 | TCONS_00062192-exon-scaffold_362-1491911889:605528..607018 | Clytia hemisphaerica | exon |
| TCONS_00062192-exon-scaffold_362-1510915933:605528..607018 | TCONS_00062192-exon-scaffold_362-1510915933:605528..607018 | Clytia hemisphaerica | exon |
| TCONS_00062192-exon-scaffold_362-1575043694:605528..607018 | TCONS_00062192-exon-scaffold_362-1575043694:605528..607018 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:604504..607018 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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