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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062234 ID=TCONS_00062234|Name=TCONS_00062234|organism=Clytia hemisphaerica|type=transcript|length=1870bp
GGTTAAGCATAATTGTTTATAGAACAGTAGCTTCCGATTGGCTGAAAAAT
GCGCAACGAATCAAACAGAAAATTGTATCAGTGAaggatttcaaaaaaag
aaaagattggttcgcttaaaaaaaataacttggtgaataattttgatgag
tttttaagattgtcaaCTATAAAAATAATCTATCGAACTTCGAGAATGCA
TTGGTCTCAAGGCCTTGTGTGCCTGCTATTTGCCGTCTTGAGTTTCGGCG
TTCAAGAAACTCAAGAACAACAAGCCAGAATGTTACCAGATTGGCCAAAG
ATTGGTGACAGAATCACGCAGCCTTTTCTTGATCAACTGATGGTCAGTCA
ACTGTTGGAACAGAATCTGACACTCGGATTCTTCTTGAAAGGGCTAAATG
GACCACCAGGTCCTCCTGGTCCACCTGGTTCCCCTGGAGAACCTGGTCCT
CCAGGTTTACCCGGTGCACCAGGAGCCCCTGGACACGTTGGTGAAGATGG
TGCTCCTGGTCCAATGGGTCCTCCTGGACCATTGGGTTCTGCTGGTGTCC
CCGGTTTCCCTGGAGAGAAAGGAGATCCAGGTGCAACTGGTTTGCCTGGA
TCTGCAGGTCTTCCGGGTGCTCCTGGTTTACCTGGTCCTGAAGGATTGGT
TGCAGAAACCCGTGATAATGTTGCAGTACAACTGAAACCAGAGaACTTCA
CAGAGAAATGCGAAGGTGAACGCTTGCTTATTGATTGCAAAACATATAAC
CATATCCAAGTCAAAGATGTATACTGGGGTCGAGATGATACTTCCACCTG
TCAAAATGCACCAAACGGTTTAGTAGCTGATAAATTTTGTGATGGAAATC
GTGAAAATGCCAAACAAAAAGTTGCGGGACAATGTAAAGGCGAACAGGCT
TGTGAAGTTGTCGCCtccaatattttctttgatGATAACAGTTGTGGAAA
TATATTCAAAGTGTTGAAAATTTGGTATGAATGTGTACCCGACTCCAGTC
CGGGCACGGAAGATACGTACGGATCACGGCGTAAACGGAAGCGTGCAACC
AAGGATAAAAGATCTTTTCGAGATAGTTAGATTAAAATCAATGACCCAGA
AATTCTAATACAAAAAAACCATCTAGTCagtaaaatgaaaaagtttcatG
TGCAGAGAATGTATTATAGACAATTAACTAAATAATCTGCGGATGAgatt
ttgatcaaattattGACTTGCTGACAACGTTGGTGTTTCTCAGTTATTGC
CAGAGAAGAGCAGAAAGGTGACGACATTGCTGAGAGAGTAAGACAAGAAA
GAAAGACGAGCTCCCACGAATTTTTTATAACAATAAAGCTTTTTCACATA
AGACCtgtatatataatattttagtTTAACAATTTATGAAATGATTCCAA
CCTTAGGTGTATGGTGTTCTTAACAGATAATTCTAGAGGGCAGAGTGTCT
TGTTTTATAAGGTCAACTTCCTAAATGCAAAGTTGATTGAAACCAATTTT
TGTAATATCAAATTAACAGTTAAGCCATAAacatcttctttattttcaag
aattttagaGTTTTTTAAGGTCATGGTAGAATGTCAAGACCACCATCGAT
CGCATCAAATAAAAGGGCGTAACCACCCTCCACCCTCCTCTCAATCATCA
ACACTCAATCACATCCACCATTCATACACCACAATCATTTATTCACTCAA
AATCATAAGTCTTTTAGATAATCCACTCACACATTAAATCATAGTCATTT
TATCTAGTTGTTAGAGAATTTTAGAccattatatttttttgtgttcctat
ttttttttgttttcaagaccTCATATATttgtaatttcaaatttgacATA
AAACTAAATTATCAAtgaca Run BLAST on NCBI transcript from alignment at scaffold_362:230918..234884- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062234 ID=TCONS_00062234|Name=TCONS_00062234|organism=Clytia hemisphaerica|type=transcript|length=3967bp|location=Sequence derived from alignment at scaffold_362:230918..234884- (Clytia hemisphaerica)
GGTTAAGCATAATTGTTTATAGAACAGTAGCTTCCGATTGGCTGAAAAAT
GCGCAACGAATCAAACAGAAAATTGTATCAGTGAAGGATTTCAAAAAAAG
AAAAGATTGGTTCGCTTAAAAAAAATAACTTGGTGAATAATTTTGATGAG
TTTTTAAGATTGTCAACTATAAAAATAATCTATCGAACTTCGAGGTGAGC
TTTGTTTTGAAGTTTGTTTTGAAATTTTTTTATTGTCGTTAATAAACAAT
AGCAATCAAAACAAAGGAAGACAAAATAGAGCTGAATTATTCCAATTCAT
TAACGGGATGATCTAATCAATAGAGCCACCTGCTTTCAATAGAATTCTAT
TGTTAAATCATTCGAATTTTTCTCAATCGAATTCTGTCAGTGGTGAAAAT
GAAAACAAGCTATTAGCGTTTACTGTTGAATTCATGCTATGCTTCCATTA
TTGAAGAAAAAAACTTTAATTTTTTGAATGCATGCGAAGGAGGCATAGAC
AGACATAGCCCAAAATAATTAACATCGCTAATTAATTTTTTGGGGCTTTT
GGTTTTGTCTCTTTTGACATAACTTGTTTTAATATCTTCTTGTGTATATA
TTGTATAGAAAATTAAAATTTATAAAGTAAGTTGGCATTTATTTTAACTT
TGATGGTTGTATTGATGGATTTTTTTTTGGGATATTATTTTTCTCATTTG
ATCGGATTCGATTGCCAATGTTTTTGTTACTTTCGATGATTTGGTTTCCC
AGCTCATAGTTAAAAGATTATTATAAATTTATTACCTGTCCTGCTTTAAT
CATTTTGGCTTCTGGTAGAATTGTTTTTATCATTGGGTCAAACTCCCGTC
AAACTTTAATAAAATTTATATTGAATACAAACTTCAACTTCAACCTCTTC
TAGCCTAAATATTCCTTGAAATACATAACAATCAAGATATTTCACCCCCT
GTAAAATTATATTTTCTCAATGCCATGGCTTTTTTATGATGAAGGATTCA
GGTTCTATAATTTTGCATAAAAATAACATTGTTTTTTTCTCGTACCTTAG
AATGCATTGGTCTCAAGGCCTTGTGTGCCTGCTATTTGCCGTCTTGAGTT
TCGGCGTTCAAGAAACTGTAAGTAAATTCATTCTTAAAAATTGTTTCTTT
TAAAAACTTTTCTTCGTCTTTATTTTCGATATCCTAGGTAGATACAAAAC
TCAATATTTTCCATTTCCAAAAACCATTTTTATCTTCAAGAAGCAATCTT
TTTCTTTTTGAAAACTTATCTTTTATCTCCAGAAAGGGTCTTTCATTTTT
GTATCTACTTAAGAAAACCACGGTTAAGACACGCTAATTTGATACTCATT
GAATTACTAAAGTCCTAAAGTGAAATTAGTCTATGGTATTGTACCGAATT
CTTTTGGACCCAGACCTTTTTTCCATGAGATTAAGGTTGACAAGACTAGG
GTGTGTAAATTAACTTTTTTACATTTACAACATAACAAACACATACCTTT
TACTCATAACATAACATAACATCACTTGACAATATCTTTACACATCTACC
ATCACATTACATTCACTGACCACCATTGAGATTTGACCATGACACCAACA
TTGAGGTATTTACAAAACAGCACCTGAAAAATAAGATACACAGATCTGTA
AATTCTCTTTGTGGCTTTTCTTTTTTGTTTTTAACGGCTTTAGACACTTA
TAAAACAAGATACTCTATATGTATATAGATTTTATTGGGGAAATTTGGCA
GATTGCGTATTTGCGACCTTTGGTTTATAAACTCCAGTGAACCGAAACTT
AATTAGTCGTTAAGATAGCAAGGGTTAAAAAACACGGAACATAGAATTTA
CATAGAACAGACAGAGAGACAGAATAACAGTATTTAAACAAGATAACAGT
ATTTGAACATAACAAAAAAAAACAGACCAGACCAGACCAGACGATATACG
ACCGTTCTCCGAAAATGGAGAAACTAAATCACAAACGAGAAGACAAGACA
AGGAACTGGAACAAACCTACGTACAAGAAAAGAAAAACTTTACTCAACAA
AGACATCGACAACCAAAATGATATCTGATTATCGATAAACAATGCCAAAA
TCTTATCCATTATAGCAAGAACAACAAGCCAGAATGTTACCAGATTGGCC
AAAGATTGGTGACAGAATCACGCAGCCTTTTCTTGATCAACTGATGGTCA
GTCAACTGTTGGAACAGAATCTGACACTCGGATTCTTCTTGAAAGGGCTA
AATGGACCACCAGGTCCTCCTGGTCCACCTGGTTCCCCTGGAGAACCTGG
TCCTCCAGGTTTACCCGGTGCACCAGGAGCCCCTGGACACGTTGGTGAAG
ATGGTGCTCCTGGTCCAATGGGTCCTCCTGGACCATTGGGTTCTGCTGGT
GTCCCCGGTTTCCCTGGAGAGAAAGGAGATCCAGGTGCAACTGGTTTGCC
TGGATCTGCAGGTCTTCCGGGTGCTCCTGGTTTACCTGGTCCTGAAGGAT
TGGTTGCAGAAACCCGTGATAATGTTGCAGTACAACTGAAACCAGAGGTG
AATACTTTGTAGATTCTTACCCTAATTTAAAAGAATTTCATTTTGAAGTC
ATTAATCAGATTTATCTTGCATTTTTATCTGGCATCTTTTAGATTTTGAT
TTCATACAATTATTTTGATAAACTTATACGCCAAAGTTCTAGTTTTGACT
TGATTGAGGGCAAAATTGATGATAACTCTTGGATTCATTATACATGAAGA
ATGATGGAAGTATATTTTGATGTATCTTTTTCTTTTCCAGAACTTCACAG
AGAAATGCGAAGGTGAACGCTTGCTTATTGATTGCAAAACATATAACCAT
ATCCAAGTCAAAGATGTATACTGGGGTCGAGATGATACTTCCACCTGTCA
AAATGCACCAAACGGTTTAGTAGCTGATAAATTTTGTGATGGAAATCGTG
AAAATGCCAAACAAAAAGTTGCGGGACAATGTAAAGGCGAACAGGCTTGT
GAAGTTGTCGCCTCCAATATTTTCTTTGATGATAACAGTTGTGGAAATAT
ATTCAAAGTGTTGAAAATTTGGTATGAATGTGTACCCGACTCCAGTCCGG
GCACGGAAGATACGTACGGATCACGGCGTAAACGGAAGCGTGCAACCAAG
GATAAAAGATCTTTTCGAGATAGTTAGATTAAAATCAATGACCCAGAAAT
TCTAATACAAAAAAACCATCTAGTCAGTAAAATGAAAAAGTTTCATGTGC
AGAGAATGTATTATAGACAATTAACTAAATAATCTGCGGATGAGATTTTG
ATCAAATTATTGACTTGCTGACAACGTTGGTGTTTCTCAGTTATTGCCAG
AGAAGAGCAGAAAGGTGACGACATTGCTGAGAGAGTAAGACAAGAAAGAA
AGACGAGCTCCCACGAATTTTTTATAACAATAAAGCTTTTTCACATAAGA
CCTGTATATATAATATTTTAGTTTAACAATTTATGAAATGATTCCAACCT
TAGGTGTATGGTGTTCTTAACAGATAATTCTAGAGGGCAGAGTGTCTTGT
TTTATAAGGTCAACTTCCTAAATGCAAAGTTGATTGAAACCAATTTTTGT
AATATCAAATTAACAGTTAAGCCATAAACATCTTCTTTATTTTCAAGAAT
TTTAGAGTTTTTTAAGGTCATGGTAGAATGTCAAGACCACCATCGATCGC
ATCAAATAAAAGGGCGTAACCACCCTCCACCCTCCTCTCAATCATCAACA
CTCAATCACATCCACCATTCATACACCACAATCATTTATTCACTCAAAAT
CATAAGTCTTTTAGATAATCCACTCACACATTAAATCATAGTCATTTTAT
CTAGTTGTTAGAGAATTTTAGACCATTATATTTTTTTGTGTTCCTATTTT
TTTTTGTTTTCAAGACCTCATATATTTGTAATTTCAAATTTGACATAAAA
CTAAATTATCAATGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062234-exon-scaffold_362-1575043694:234691..234884 | TCONS_00062234-exon-scaffold_362-1575043694:234691..234884 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1575043694:233768..233834 | TCONS_00062234-exon-scaffold_362-1575043694:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1575043694:232338..232769 | TCONS_00062234-exon-scaffold_362-1575043694:232338..232769 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1575043694:230918..232094 | TCONS_00062234-exon-scaffold_362-1575043694:230918..232094 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1510915933:234691..234884 | TCONS_00062234-exon-scaffold_362-1510915933:234691..234884 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1510915933:233768..233834 | TCONS_00062234-exon-scaffold_362-1510915933:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1510915933:232338..232769 | TCONS_00062234-exon-scaffold_362-1510915933:232338..232769 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1510915933:230918..232094 | TCONS_00062234-exon-scaffold_362-1510915933:230918..232094 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1491911889:234691..234884 | TCONS_00062234-exon-scaffold_362-1491911889:234691..234884 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1491911889:233768..233834 | TCONS_00062234-exon-scaffold_362-1491911889:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1491911889:232338..232769 | TCONS_00062234-exon-scaffold_362-1491911889:232338..232769 | Clytia hemisphaerica | exon |
| TCONS_00062234-exon-scaffold_362-1491911889:230918..232094 | TCONS_00062234-exon-scaffold_362-1491911889:230918..232094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:230918..234884 - |
Blast
The following BLAST results are available for this feature:
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