TCONS_00062257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062257
Unique NameTCONS_00062257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062257 ID=TCONS_00062257|Name=TCONS_00062257|organism=Clytia hemisphaerica|type=transcript|length=2179bp
CTTTTTTCTAGATGCGTCCAATGTACTGTACTTATTTTATTTCTCTCACT
AAAGGTAAAACTTAAAAGAGAATTATAATTGTTGAAATTATTATGAATTT
GTAGTATAATTAAAAACACATCATGATTCGTTTCCACAAAGAGCACGGTC
AAAACATTCGACTTTCAGAGGATTGCACTGTGGCTTCTAGAACACAAAGT
TTTGCAAATGCTTTAGTATTTAGTCAAAGACCTCTTGAAGAGAGTGAAGT
GTTTATGGTTGAAATTACAGAACATGAACGTGGATGGGCCGGCAATTTAC
GATGCGGTATAACATTGCATAACCCGGCTGATATTGTAATACCGCAATAC
TTGTTACCAGACTTGTATCAACTTGGTAGATCATGTGTCTTCTCCATAAA
ACCATGTATGTTAGATCCATTTAGTGATATGGAGCTATCAGAGAAAAACG
AGGAAGATGATTTCCATTGCAAGTATTTTGATTCTATAACCAATTGTAAA
ACAACACATAATGTCCATCCAGAACTGTTGGTGAATGAAGATTATATTGG
TGTTAAACCATGTGATAGAGGTAGCCGCATTGGATTTTTCATATCACCAG
GCAgagaattatttttcattatcaATGGGATACAATATGGACCTTGTGCA
GGACAAATTCCAATAAATGGTCCAGTTTATGCGGCTCTTGATTTGTATGG
GATGacaagtcaaataaaagtcataAATTGCCATGTAGCACGACTGAAGA
CTTTGAGTATGGACTCATTGTCTTCAAATCATTCACGTAAAACAATATCC
GAACAAAATCTACCGaaacttttaaagaaagaaCTTTTGCTGATGTATGG
ATTAGTCGAGGATGAGGAAGATAAATTATCGTTGTCTTATTCCTCATCTA
AACGACCAAGGCTGATGTCAAAATTATGCTGGGACCAAGGATAAATGTCT
TTTAGATAATGCAATGATTATATAATCCTTAATTTATCCATATTTTAAGT
GCATTTTATACTACTATTTTATTTATTGTACATTTTCGTGTTTTAGAGTT
TCAAGTTTGAATTTTGAGAACTCATAGAAAATACACGggctgcaaaatta
tatcaatgcagtcaaaacatgtgattactcgaaaaagttcacgtgatctt
attcccatgttacttgctttacaacttacagctgataactttattagtgt
caataaatttgaaccaatcagaaataaatgtcatgtaacaagcacataaa
aatttcgagtgaaagcgtgatttgtcttcagactttaattttgcaacctt
cTCTGTATTGATATACATATATGCCTATCAATTAGAAGTGATTTATACAA
GCATGCAGGTCTTCatagggctacttagactacacaatatattgacgaac
aatatttgacaatatcgttttcggaccgtaatgtacgatgTAAATAACAG
GTGCTCTATTATGAAAAGGAATTTTccttctgtaaacaatccccctatat
tgttggaaaattgcaaatcgagctgacaatatattgcagaAACCTTTCAA
TATATTGTCTGCACTctagcaatatatcatcaatatattgcctgacaata
tattgtgtagtgtatgtaacCCTTATAATATACGTTTGTCCGAGCAGCAA
GAGTGTACGTCCCACACCTCCAATCAACACTCTGAAACGGTCCAGAAAAT
GTCCCCTTTGGAGCATGATTTCAAATTAGGAGAGACATTTACGGGGAGGT
AAAGATAAATGATTTTCTCTCTTGCGtcgttttttaatttcattatagAC
TTGTTATTTCGGAAATCCTCGgactaaatcttttttttcgattagaaaat
gaaataattatgtTATTTTGATAGAATAANGAAATCCTCGGACTAAATCT
TTTTTTCgattagaaaatgaaataattatgtTATTTTGATAGATGTATAA
ATTTTTTAGCCAACTGGCTCAatgttatattttacaaaatgtttTGTTGG
AAGTCATACAGTATGCATATTTATCACATATTTTGTTGGGTCGTACATAT
AGTTGAccatagaaaattttcaatgcATTTTTACTTTATTATGCAAAAGT
TTTAAAGACAAACACTGTCATGTCAATCCGCAGTTGTTGATTTATATCTG
GAGCTTGCCCAAAATTGTGTTGATGTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_362:505016..508767-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062257 ID=TCONS_00062257|Name=TCONS_00062257|organism=Clytia hemisphaerica|type=transcript|length=3752bp|location=Sequence derived from alignment at scaffold_362:505016..508767- (Clytia hemisphaerica)
CTTTTTTCTAGATGCGTCCAATGTACTGTACTTATTTTATTTCTCTCACT
AAAGGTAAAACTTAAAAGAGAATTATAATTGTTGAAATTATTATGAATTT
GTAGTATAATTAAAAACACATCATGATTCGTTTCCACAAAGAGCACGGTC
AAAACATTCGACTTTCAGAGGATTGCACTGTGGCTTCTAGAACACAAAGT
TTTGCAAATGCTTTAGTATTTAGTCAAAGACCTCTTGAAGAGAGTGAAGT
GTTTATGGTTGAAATTACAGAACATGAACGTGGATGGGCCGGCAATTTAC
GATGCGGTATGAAACAATAAATCTTTTTTCTAAAAACAATGATATTTTGG
AAAATTTATCGGTCCTTTTTACGCCNAACAAATCTTTTTTCTAAAAACAA
TGATATTTTGGAAAACTTATCGCAATCGGTCCTTTTTACGCCGGCCTTAA
TTACACCAAAGCTCTTTTTTCCATTTTCAGCCCGGTTCTAATTTAATTAC
GATCCCTTACATTGTCCCTTATTACTCTAGCAAAAAAAAATTAGTGTCTA
TTATAGGGCTGATGTAAAAAAGGACCGATAAGGTACTGCAGTGACACGAT
CTGTATGATTAGTGAAAGACTACTGTATTTTCTGTTATATTATATTGTTA
ATGTCTTCTTCTTTAGTTATATCCAACATAACATCATCTTTTGGGGGAAA
GATATGTAGACTAATCTTGTATTATCTATCTAACTTTTGCCAGTTCTTTG
CGTTTGCCCCTCTCTTCGTTTGAATTAGAATGTGTTTTCGTTTACTAGAG
TTTTTTTTTATCTAATTGTATGATTAGCTTTTCAACCTGGATAGTTTCAA
GGGGATGTGAAGTACTTTTTTTCAATTCAGTAAATAATTTTTCTATACCT
CAAATACACGTTTTTTTTTTATTAGAACACCTAAAATTTGGCTGAGCCTG
GATGTGCTTATTTTTTTAGCAATTTTCAGCCTAAAATGTTCTTAAATGCG
TTCTTAATTTTTCAGACTACTCTAAATCGACAATATCATGCAAAATATGG
AGCACTTAAAATTGGTAAAATTTGGACAATATTTGACTCTCGATTTTTGA
AAATCCATCACTAATTTCAGTTAAAACTGCTTGAAAAGAGGAAACAATTG
TAGTCTCTTGTCATTTTTTTCCAAACTGAGGCTGGGCATGTTCTTAAGAT
ATTCTTAATTTTTCGACGAATTTCAGCCTCAATGTTCTTATAAACTGGGT
TCTAATAAGAAAAAAAAACTTGTATGCAATTAATCTTTAGTTGGTGTTCT
GTGTCCACCCATTTCTTGTATGTAACCTTTTAATGGCTTACTTAATGACC
ATATATGGATAATAATCTTGTATTATCTATCTAACCTTTGCCAGTTCTTT
GCGTTTGCCCCTCTCTTCGTTTGAATTAGAATATGTTTTTCGTTTGCTAG
AGTTTGTTTTTTGATATAATTGTATGACTAGCTTTTCAGTTTCCACCCAT
TTCTTGTGTGTAAAGCTGTGATTTAAAGTGGATTGTTTGGATATGATTTG
TTTGTCCGCTCAAATGGATTCTAATCTTCCTTTATTTGCAGGTATAACAT
TGCATAACCCGGCTGATATTGTAATACCGCAATACTTGTTACCAGACTTG
TATCAACTTGGTAGATCATGTGTCTTCTCCATAAAACCATGTATGTTAGA
TCCATTTAGTGATATGGAGCTATCAGAGAAAAACGAGGAAGATGATTTCC
ATTGCAAGTATTTTGATTCTATAACCAATTGTAAAACAACACATAATGTC
CATCCAGAACTGTTGGTGAATGAAGATTATATTGGTGTTAAACCATGTGA
TAGAGGTAGCCGCATTGGATTTTTCATATCACCAGGCAGAGAATTATTTT
TCATTATCAATGGGATACAATATGGACCTTGTGCAGGACAAATTCCAATA
AATGGTCCAGTTTATGCGGCTCTTGATTTGTATGGGATGACAAGTCAAAT
AAAAGTCATAAATTGCCATGGTAAGCTTTTCTAACTTTTCCTCGCACGTT
TCAGAGTTAGTAAGGTAGCATAAAGAGCTTTAAATAAGGTTATGAACAAA
AGACCGACCATTTAAAGTTTAAAAAGACCTGTTTATCACACCTTTTTATA
CAAATAATGTTGGAATGATTTCCTGAACAGTGTAGAATCAGGAATTCCTC
GTTAAACAAAAAGATCTTGCTATTAATTTACCGCCCTATCCAGGAGTCAA
ATAGATACATATCTGAACTTCCCTCAAAAATTGTTTTTTTCTATCTTTTC
TCCTACAGTAGCACGACTGAAGACTTTGAGTATGGACTCATTGTCTTCAA
ATCATTCACGTAAAACAATATCCGAACAAAATCTACCGAAACTTTTAAAG
AAAGAACTTTTGCTGATGTATGGATTAGTCGAGGATGAGGAAGATAAATT
ATCGTTGTCTTATTCCTCATCTAAACGACCAAGGCTGATGTCAAAATTAT
GCTGGGACCAAGGATAAATGTCTTTTAGATAATGCAATGATTATATAATC
CTTAATTTATCCATATTTTAAGTGCATTTTATACTACTATTTTATTTATT
GTACATTTTCGTGTTTTAGAGTTTCAAGTTTGAATTTTGAGAACTCATAG
AAAATACACGGGCTGCAAAATTATATCAATGCAGTCAAAACATGTGATTA
CTCGAAAAAGTTCACGTGATCTTATTCCCATGTTACTTGCTTTACAACTT
ACAGCTGATAACTTTATTAGTGTCAATAAATTTGAACCAATCAGAAATAA
ATGTCATGTAACAAGCACATAAAAATTTCGAGTGAAAGCGTGATTTGTCT
TCAGACTTTAATTTTGCAACCTTCTCTGTATTGATATACATATATGCCTA
TCAATTAGAAGTGATTTATACAAGCATGCAGGTCTTCATAGGGCTACTTA
GACTACACAATATATTGACGAACAATATTTGACAATATCGTTTTCGGACC
GTAATGTACGATGTAAATAACAGGTGCTCTATTATGAAAAGGAATTTTCC
TTCTGTAAACAATCCCCCTATATTGTTGGAAAATTGCAAATCGAGCTGAC
AATATATTGCAGAAACCTTTCAATATATTGTCTGCACTCTAGCAATATAT
CATCAATATATTGCCTGACAATATATTGTGTAGTGTATGTAACCCTTATA
ATATACGTTTGTCCGAGCAGCAAGAGTGTACGTCCCACACCTCCAATCAA
CACTCTGAAACGGTCCAGAAAATGTCCCCTTTGGAGCATGATTTCAAATT
AGGAGAGACATTTACGGGGAGGTAAAGATAAATGATTTTCTCTCTTGCGT
CGTTTTTTAATTTCATTATAGACTTGTTATTTCGGAAATCCTCGGACTAA
ATCTTTTTTTTCGATTAGAAAATGAAATAATTATGTTATTTTGATAGAAT
AANGAAATCCTCGGACTAAATCTTTTTTTCGATTAGAAAATGAAATAATT
ATGTTATTTTGATAGATGTATAAATTTTTTAGCCAACTGGCTCAATGTTA
TATTTTACAAAATGTTTTGTTGGAAGTCATACAGTATGCATATTTATCAC
ATATTTTGTTGGGTCGTACATATAGTTGACCATAGAAAATTTTCAATGCA
TTTTTACTTTATTATGCAAAAGTTTTAAAGACAAACACTGTCATGTCAAT
CCGCAGTTGTTGATTTATATCTGGAGCTTGCCCAAAATTGTGTTGATGTT
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039020XLOC_039020Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062257-exon-scaffold_362-1575043694:508462..508767TCONS_00062257-exon-scaffold_362-1575043694:508462..508767Clytia hemisphaericaexon
TCONS_00062257-exon-scaffold_362-1575043694:506748..507176TCONS_00062257-exon-scaffold_362-1575043694:506748..507176Clytia hemisphaericaexon
TCONS_00062257-exon-scaffold_362-1575043694:505016..506459TCONS_00062257-exon-scaffold_362-1575043694:505016..506459Clytia hemisphaericaexon
TCONS_00062257-exon-scaffold_362-1510915933:508462..508767TCONS_00062257-exon-scaffold_362-1510915933:508462..508767Clytia hemisphaericaexon
TCONS_00062257-exon-scaffold_362-1510915933:506748..507176TCONS_00062257-exon-scaffold_362-1510915933:506748..507176Clytia hemisphaericaexon
TCONS_00062257-exon-scaffold_362-1510915933:505016..506459TCONS_00062257-exon-scaffold_362-1510915933:505016..506459Clytia hemisphaericaexon
TCONS_00062257-exon-scaffold_362-1491911889:508462..508767TCONS_00062257-exon-scaffold_362-1491911889:508462..508767Clytia hemisphaericaexon
TCONS_00062257-exon-scaffold_362-1491911889:506748..507176TCONS_00062257-exon-scaffold_362-1491911889:506748..507176Clytia hemisphaericaexon
TCONS_00062257-exon-scaffold_362-1491911889:505016..506459TCONS_00062257-exon-scaffold_362-1491911889:505016..506459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:505016..508767 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.63952	5.32246	5.19877	4.03131	5.58374	4.77966	8.37968	8.40311	7.55599	6.38285	4.01331	5.11919	5.6743	4.17687	5.01432	4.63896	6.05979	6.17467	4.1	5.55043	4.66294	4.62239	8.54884	9.94575	8.69924	7.58733	4.35199	3.1486	5.71389	5.89033
Blast
[Close]
BLAST of TCONS_00062257 vs. Swiss-Prot (Human)
Match: NEUL2 (Neuralized-like protein 2 OS=Homo sapiens GN=NEURL2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.304e-26
Identity = 72/220 (32.73%), Postives = 111/220 (50.45%), Query Frame = 3 
Query:  129 RFHKEHGQNIRLSEDCTVASRTQSFANALVFSQRPLEESEVFMVEITEHERGWAGNLRCGITLHNPADIV-IPQYLLPDLYQLGRSCVFSIK------PCMLDPFSDMELSEKNE----EDDFHCKYFDSITNCKTTHNVHPEL---LVNEDYI--GVKPCDRGSRIGFFISP----GRELFFIINGIQYGPCAGQIPINGPVYAALDLYGMTSQIKVIN 728
            RFH+ HG NIR+    T A+R +SFA+ + FS+ PL   +VF+VEI E E GW G+LR G+T  +PA +  +P++ LPDL  LG + VF+I       P    P ++     +      E     + F  I   +      P L   L+++ Y    + P  R SR+G    P      ++  IING   GP A  +P   P+YA +D++  T  ++++ 
Sbjct:   25 RFHRVHGANIRVDPSGTRATRVESFAHGVCFSREPLAPGQVFLVEIEEKELGWCGHLRLGLTALDPASLAPVPEFSLPDLVNLGHTWVFAITRHHNRVPREGRPEAEAAAPSRPPTLLVEPYLRIEQF-RIPRDRLVGRSRPGLYSHLLDQLYELNVLPPTARRSRLGVLFCPRPDGTADMHIIINGEDMGPSARGLPAAQPLYAVVDVFASTKSVRLVQ 243
The following BLAST results are available for this feature:
BLAST of TCONS_00062257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEUL21.304e-2632.73Neuralized-like protein 2 OS=Homo sapiens GN=NEURL... [more]
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