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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062257 ID=TCONS_00062257|Name=TCONS_00062257|organism=Clytia hemisphaerica|type=transcript|length=2179bp
CTTTTTTCTAGATGCGTCCAATGTACTGTACTTATTTTATTTCTCTCACT
AAAGGTAAAACTTAAAAGAGAATTATAATTGTTGAAATTATTATGAATTT
GTAGTATAATTAAAAACACATCATGATTCGTTTCCACAAAGAGCACGGTC
AAAACATTCGACTTTCAGAGGATTGCACTGTGGCTTCTAGAACACAAAGT
TTTGCAAATGCTTTAGTATTTAGTCAAAGACCTCTTGAAGAGAGTGAAGT
GTTTATGGTTGAAATTACAGAACATGAACGTGGATGGGCCGGCAATTTAC
GATGCGGTATAACATTGCATAACCCGGCTGATATTGTAATACCGCAATAC
TTGTTACCAGACTTGTATCAACTTGGTAGATCATGTGTCTTCTCCATAAA
ACCATGTATGTTAGATCCATTTAGTGATATGGAGCTATCAGAGAAAAACG
AGGAAGATGATTTCCATTGCAAGTATTTTGATTCTATAACCAATTGTAAA
ACAACACATAATGTCCATCCAGAACTGTTGGTGAATGAAGATTATATTGG
TGTTAAACCATGTGATAGAGGTAGCCGCATTGGATTTTTCATATCACCAG
GCAgagaattatttttcattatcaATGGGATACAATATGGACCTTGTGCA
GGACAAATTCCAATAAATGGTCCAGTTTATGCGGCTCTTGATTTGTATGG
GATGacaagtcaaataaaagtcataAATTGCCATGTAGCACGACTGAAGA
CTTTGAGTATGGACTCATTGTCTTCAAATCATTCACGTAAAACAATATCC
GAACAAAATCTACCGaaacttttaaagaaagaaCTTTTGCTGATGTATGG
ATTAGTCGAGGATGAGGAAGATAAATTATCGTTGTCTTATTCCTCATCTA
AACGACCAAGGCTGATGTCAAAATTATGCTGGGACCAAGGATAAATGTCT
TTTAGATAATGCAATGATTATATAATCCTTAATTTATCCATATTTTAAGT
GCATTTTATACTACTATTTTATTTATTGTACATTTTCGTGTTTTAGAGTT
TCAAGTTTGAATTTTGAGAACTCATAGAAAATACACGggctgcaaaatta
tatcaatgcagtcaaaacatgtgattactcgaaaaagttcacgtgatctt
attcccatgttacttgctttacaacttacagctgataactttattagtgt
caataaatttgaaccaatcagaaataaatgtcatgtaacaagcacataaa
aatttcgagtgaaagcgtgatttgtcttcagactttaattttgcaacctt
cTCTGTATTGATATACATATATGCCTATCAATTAGAAGTGATTTATACAA
GCATGCAGGTCTTCatagggctacttagactacacaatatattgacgaac
aatatttgacaatatcgttttcggaccgtaatgtacgatgTAAATAACAG
GTGCTCTATTATGAAAAGGAATTTTccttctgtaaacaatccccctatat
tgttggaaaattgcaaatcgagctgacaatatattgcagaAACCTTTCAA
TATATTGTCTGCACTctagcaatatatcatcaatatattgcctgacaata
tattgtgtagtgtatgtaacCCTTATAATATACGTTTGTCCGAGCAGCAA
GAGTGTACGTCCCACACCTCCAATCAACACTCTGAAACGGTCCAGAAAAT
GTCCCCTTTGGAGCATGATTTCAAATTAGGAGAGACATTTACGGGGAGGT
AAAGATAAATGATTTTCTCTCTTGCGtcgttttttaatttcattatagAC
TTGTTATTTCGGAAATCCTCGgactaaatcttttttttcgattagaaaat
gaaataattatgtTATTTTGATAGAATAANGAAATCCTCGGACTAAATCT
TTTTTTCgattagaaaatgaaataattatgtTATTTTGATAGATGTATAA
ATTTTTTAGCCAACTGGCTCAatgttatattttacaaaatgtttTGTTGG
AAGTCATACAGTATGCATATTTATCACATATTTTGTTGGGTCGTACATAT
AGTTGAccatagaaaattttcaatgcATTTTTACTTTATTATGCAAAAGT
TTTAAAGACAAACACTGTCATGTCAATCCGCAGTTGTTGATTTATATCTG
GAGCTTGCCCAAAATTGTGTTGATGTTGG Run BLAST on NCBI transcript from alignment at scaffold_362:505016..508767- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062257 ID=TCONS_00062257|Name=TCONS_00062257|organism=Clytia hemisphaerica|type=transcript|length=3752bp|location=Sequence derived from alignment at scaffold_362:505016..508767- (Clytia hemisphaerica)
CTTTTTTCTAGATGCGTCCAATGTACTGTACTTATTTTATTTCTCTCACT
AAAGGTAAAACTTAAAAGAGAATTATAATTGTTGAAATTATTATGAATTT
GTAGTATAATTAAAAACACATCATGATTCGTTTCCACAAAGAGCACGGTC
AAAACATTCGACTTTCAGAGGATTGCACTGTGGCTTCTAGAACACAAAGT
TTTGCAAATGCTTTAGTATTTAGTCAAAGACCTCTTGAAGAGAGTGAAGT
GTTTATGGTTGAAATTACAGAACATGAACGTGGATGGGCCGGCAATTTAC
GATGCGGTATGAAACAATAAATCTTTTTTCTAAAAACAATGATATTTTGG
AAAATTTATCGGTCCTTTTTACGCCNAACAAATCTTTTTTCTAAAAACAA
TGATATTTTGGAAAACTTATCGCAATCGGTCCTTTTTACGCCGGCCTTAA
TTACACCAAAGCTCTTTTTTCCATTTTCAGCCCGGTTCTAATTTAATTAC
GATCCCTTACATTGTCCCTTATTACTCTAGCAAAAAAAAATTAGTGTCTA
TTATAGGGCTGATGTAAAAAAGGACCGATAAGGTACTGCAGTGACACGAT
CTGTATGATTAGTGAAAGACTACTGTATTTTCTGTTATATTATATTGTTA
ATGTCTTCTTCTTTAGTTATATCCAACATAACATCATCTTTTGGGGGAAA
GATATGTAGACTAATCTTGTATTATCTATCTAACTTTTGCCAGTTCTTTG
CGTTTGCCCCTCTCTTCGTTTGAATTAGAATGTGTTTTCGTTTACTAGAG
TTTTTTTTTATCTAATTGTATGATTAGCTTTTCAACCTGGATAGTTTCAA
GGGGATGTGAAGTACTTTTTTTCAATTCAGTAAATAATTTTTCTATACCT
CAAATACACGTTTTTTTTTTATTAGAACACCTAAAATTTGGCTGAGCCTG
GATGTGCTTATTTTTTTAGCAATTTTCAGCCTAAAATGTTCTTAAATGCG
TTCTTAATTTTTCAGACTACTCTAAATCGACAATATCATGCAAAATATGG
AGCACTTAAAATTGGTAAAATTTGGACAATATTTGACTCTCGATTTTTGA
AAATCCATCACTAATTTCAGTTAAAACTGCTTGAAAAGAGGAAACAATTG
TAGTCTCTTGTCATTTTTTTCCAAACTGAGGCTGGGCATGTTCTTAAGAT
ATTCTTAATTTTTCGACGAATTTCAGCCTCAATGTTCTTATAAACTGGGT
TCTAATAAGAAAAAAAAACTTGTATGCAATTAATCTTTAGTTGGTGTTCT
GTGTCCACCCATTTCTTGTATGTAACCTTTTAATGGCTTACTTAATGACC
ATATATGGATAATAATCTTGTATTATCTATCTAACCTTTGCCAGTTCTTT
GCGTTTGCCCCTCTCTTCGTTTGAATTAGAATATGTTTTTCGTTTGCTAG
AGTTTGTTTTTTGATATAATTGTATGACTAGCTTTTCAGTTTCCACCCAT
TTCTTGTGTGTAAAGCTGTGATTTAAAGTGGATTGTTTGGATATGATTTG
TTTGTCCGCTCAAATGGATTCTAATCTTCCTTTATTTGCAGGTATAACAT
TGCATAACCCGGCTGATATTGTAATACCGCAATACTTGTTACCAGACTTG
TATCAACTTGGTAGATCATGTGTCTTCTCCATAAAACCATGTATGTTAGA
TCCATTTAGTGATATGGAGCTATCAGAGAAAAACGAGGAAGATGATTTCC
ATTGCAAGTATTTTGATTCTATAACCAATTGTAAAACAACACATAATGTC
CATCCAGAACTGTTGGTGAATGAAGATTATATTGGTGTTAAACCATGTGA
TAGAGGTAGCCGCATTGGATTTTTCATATCACCAGGCAGAGAATTATTTT
TCATTATCAATGGGATACAATATGGACCTTGTGCAGGACAAATTCCAATA
AATGGTCCAGTTTATGCGGCTCTTGATTTGTATGGGATGACAAGTCAAAT
AAAAGTCATAAATTGCCATGGTAAGCTTTTCTAACTTTTCCTCGCACGTT
TCAGAGTTAGTAAGGTAGCATAAAGAGCTTTAAATAAGGTTATGAACAAA
AGACCGACCATTTAAAGTTTAAAAAGACCTGTTTATCACACCTTTTTATA
CAAATAATGTTGGAATGATTTCCTGAACAGTGTAGAATCAGGAATTCCTC
GTTAAACAAAAAGATCTTGCTATTAATTTACCGCCCTATCCAGGAGTCAA
ATAGATACATATCTGAACTTCCCTCAAAAATTGTTTTTTTCTATCTTTTC
TCCTACAGTAGCACGACTGAAGACTTTGAGTATGGACTCATTGTCTTCAA
ATCATTCACGTAAAACAATATCCGAACAAAATCTACCGAAACTTTTAAAG
AAAGAACTTTTGCTGATGTATGGATTAGTCGAGGATGAGGAAGATAAATT
ATCGTTGTCTTATTCCTCATCTAAACGACCAAGGCTGATGTCAAAATTAT
GCTGGGACCAAGGATAAATGTCTTTTAGATAATGCAATGATTATATAATC
CTTAATTTATCCATATTTTAAGTGCATTTTATACTACTATTTTATTTATT
GTACATTTTCGTGTTTTAGAGTTTCAAGTTTGAATTTTGAGAACTCATAG
AAAATACACGGGCTGCAAAATTATATCAATGCAGTCAAAACATGTGATTA
CTCGAAAAAGTTCACGTGATCTTATTCCCATGTTACTTGCTTTACAACTT
ACAGCTGATAACTTTATTAGTGTCAATAAATTTGAACCAATCAGAAATAA
ATGTCATGTAACAAGCACATAAAAATTTCGAGTGAAAGCGTGATTTGTCT
TCAGACTTTAATTTTGCAACCTTCTCTGTATTGATATACATATATGCCTA
TCAATTAGAAGTGATTTATACAAGCATGCAGGTCTTCATAGGGCTACTTA
GACTACACAATATATTGACGAACAATATTTGACAATATCGTTTTCGGACC
GTAATGTACGATGTAAATAACAGGTGCTCTATTATGAAAAGGAATTTTCC
TTCTGTAAACAATCCCCCTATATTGTTGGAAAATTGCAAATCGAGCTGAC
AATATATTGCAGAAACCTTTCAATATATTGTCTGCACTCTAGCAATATAT
CATCAATATATTGCCTGACAATATATTGTGTAGTGTATGTAACCCTTATA
ATATACGTTTGTCCGAGCAGCAAGAGTGTACGTCCCACACCTCCAATCAA
CACTCTGAAACGGTCCAGAAAATGTCCCCTTTGGAGCATGATTTCAAATT
AGGAGAGACATTTACGGGGAGGTAAAGATAAATGATTTTCTCTCTTGCGT
CGTTTTTTAATTTCATTATAGACTTGTTATTTCGGAAATCCTCGGACTAA
ATCTTTTTTTTCGATTAGAAAATGAAATAATTATGTTATTTTGATAGAAT
AANGAAATCCTCGGACTAAATCTTTTTTTCGATTAGAAAATGAAATAATT
ATGTTATTTTGATAGATGTATAAATTTTTTAGCCAACTGGCTCAATGTTA
TATTTTACAAAATGTTTTGTTGGAAGTCATACAGTATGCATATTTATCAC
ATATTTTGTTGGGTCGTACATATAGTTGACCATAGAAAATTTTCAATGCA
TTTTTACTTTATTATGCAAAAGTTTTAAAGACAAACACTGTCATGTCAAT
CCGCAGTTGTTGATTTATATCTGGAGCTTGCCCAAAATTGTGTTGATGTT
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062257-exon-scaffold_362-1575043694:508462..508767 | TCONS_00062257-exon-scaffold_362-1575043694:508462..508767 | Clytia hemisphaerica | exon |
| TCONS_00062257-exon-scaffold_362-1575043694:506748..507176 | TCONS_00062257-exon-scaffold_362-1575043694:506748..507176 | Clytia hemisphaerica | exon |
| TCONS_00062257-exon-scaffold_362-1575043694:505016..506459 | TCONS_00062257-exon-scaffold_362-1575043694:505016..506459 | Clytia hemisphaerica | exon |
| TCONS_00062257-exon-scaffold_362-1510915933:508462..508767 | TCONS_00062257-exon-scaffold_362-1510915933:508462..508767 | Clytia hemisphaerica | exon |
| TCONS_00062257-exon-scaffold_362-1510915933:506748..507176 | TCONS_00062257-exon-scaffold_362-1510915933:506748..507176 | Clytia hemisphaerica | exon |
| TCONS_00062257-exon-scaffold_362-1510915933:505016..506459 | TCONS_00062257-exon-scaffold_362-1510915933:505016..506459 | Clytia hemisphaerica | exon |
| TCONS_00062257-exon-scaffold_362-1491911889:508462..508767 | TCONS_00062257-exon-scaffold_362-1491911889:508462..508767 | Clytia hemisphaerica | exon |
| TCONS_00062257-exon-scaffold_362-1491911889:506748..507176 | TCONS_00062257-exon-scaffold_362-1491911889:506748..507176 | Clytia hemisphaerica | exon |
| TCONS_00062257-exon-scaffold_362-1491911889:505016..506459 | TCONS_00062257-exon-scaffold_362-1491911889:505016..506459 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:505016..508767 - |
Blast
BLAST of TCONS_00062257 vs. Swiss-Prot (Human)
Match: NEUL2 (Neuralized-like protein 2 OS=Homo sapiens GN=NEURL2 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.304e-26 Identity = 72/220 (32.73%), Postives = 111/220 (50.45%), Query Frame = 3
Query: 129 RFHKEHGQNIRLSEDCTVASRTQSFANALVFSQRPLEESEVFMVEITEHERGWAGNLRCGITLHNPADIV-IPQYLLPDLYQLGRSCVFSIK------PCMLDPFSDMELSEKNE----EDDFHCKYFDSITNCKTTHNVHPEL---LVNEDYI--GVKPCDRGSRIGFFISP----GRELFFIINGIQYGPCAGQIPINGPVYAALDLYGMTSQIKVIN 728
RFH+ HG NIR+ T A+R +SFA+ + FS+ PL +VF+VEI E E GW G+LR G+T +PA + +P++ LPDL LG + VF+I P P ++ + E + F I + P L L+++ Y + P R SR+G P ++ IING GP A +P P+YA +D++ T ++++
Sbjct: 25 RFHRVHGANIRVDPSGTRATRVESFAHGVCFSREPLAPGQVFLVEIEEKELGWCGHLRLGLTALDPASLAPVPEFSLPDLVNLGHTWVFAITRHHNRVPREGRPEAEAAAPSRPPTLLVEPYLRIEQF-RIPRDRLVGRSRPGLYSHLLDQLYELNVLPPTARRSRLGVLFCPRPDGTADMHIIINGEDMGPSARGLPAAQPLYAVVDVFASTKSVRLVQ 243
The following BLAST results are available for this feature:
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