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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062269 ID=TCONS_00062269|Name=TCONS_00062269|organism=Clytia hemisphaerica|type=transcript|length=1801bpRun BLAST on NCBI protein sequence of TCONS_00062269-protein >TCONS_00062269-protein ID=TCONS_00062269-protein|Name=TCONS_00062269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=530bp MSLYTRFHLKKVEKTLCVIANYQRLNSTAAAAAPSHKTTKEKYGYVISDARun BLAST on NCBI transcript from alignment at scaffold_362:701008..716324- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062269 ID=TCONS_00062269|Name=TCONS_00062269|organism=Clytia hemisphaerica|type=transcript|length=15317bp|location=Sequence derived from alignment at scaffold_362:701008..716324- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_362:701008..716324- >TCONS_00062269 ID=TCONS_00062269|Name=TCONS_00062269|organism=Clytia hemisphaerica|type=CDS|length=27081bp|location=Sequence derived from alignment at scaffold_362:701008..716324- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062269 vs. Swiss-Prot (Human)
Match: MET17 (Methyltransferase-like protein 17, mitochondrial OS=Homo sapiens GN=METTL17 PE=1 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 2.420e-58 Identity = 107/294 (36.39%), Postives = 165/294 (56.12%), Query Frame = 1
Query: 670 TTAYVASQSNTVYAATYRALSEIKKRVPEYNPKTLLDFGSGTGMTVWAASELWRKSIKEYQCVDVSERMNDTGEFLLRGGDDRKLPLKVPNVYFKRFLPISNQLMYDVVVSSYSLTELPFRSQRAQAIRSLWNKTNDFLVIVEPGNNEGFDATLQARQFLLRSLEEEFMEDDYDSGWDSIQGEQNRSDGYIFAPCPHEETCARTYVETRDQPCNFYQKTE-IPFALRNTNMKRYGYAGERFSYLILRKGRNNMQTDDEGWTRILKEPKSRNRHIICELCCSNGNIEKHVVTKNK 1548
+ Y+A++ + +AA RA EI+ R P + P+TL+DFGSGTG WAA +W +S++EY CVD S M E LL+GG + P +P V+F++FLP+S ++ +DVVVS++SL+ELP ++ R + +++LW KT FLV+VE G G + AR +L+ E+ ++ G++FAPCPHE C + + C+F Q IPF+ N K E+FS +IL +G + W RI + R RH+ C LCC +G+++ V+T +
Sbjct: 155 SLVYMAARLDGGFAAVSRAFHEIRARNPAFQPQTLMDFGSGTGSVTWAAHSIWGQSLREYMCVDRSAAMLVLAEKLLKGGSESGEPY-IPGVFFRQFLPVSPKVQFDVVVSAFSLSELPSKADRTEVVQTLWRKTGHFLVLVENGTKAGHSLLMDARDLVLKGKEKSPLDP---------------RPGFVFAPCPHELPCP----QLTNLACSFSQAYHPIPFSW-NKKPKE-----EKFSMVILARGSPE---EAHRWPRITQPVLKRPRHVHCHLCCPDGHMQHAVLTARR 419 The following BLAST results are available for this feature:
BLAST of TCONS_00062269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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