TCONS_00062270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062270
Unique NameTCONS_00062270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062270 ID=TCONS_00062270|Name=TCONS_00062270|organism=Clytia hemisphaerica|type=transcript|length=506bp
GAAAAAGTGTGATAAACTtcaccaaaacaaaaaaaaacttggtAGTAAAT
CCGCTTCAGATAAACTGAGAAAGGCTAATCTAGAAGGCAAAATTTTTATC
AACTGTAACCTTGCTCCctattcaaaatttctttggagTTCCTGTAAGAA
ATTATATGATGAAAGATTGATTGACAGATTCTGGGTTTATAATGGAAGTG
TTTACATTGCAATCAATGAAAATAACGTTGATGTTCACACTAAAATAGAA
CATTTGTCAACTCTGGAGAAAATTCAATAAACAATAAATTGGTTCCTGAA
Aattagtttattgttcaacttggagagggaatgtttgtaaacataaattt
tttttatagaattctttttcatagcagttatttggagGGTCaaatttagg
cagggctgtcggatttaggaccactcatggTATCCACCCAATCATCCTAA
ATTTACTTTAATTGCCCTATGAGTgccaaaaaattgtatttaaaaCTATA
AATTTA
Run BLAST on NCBI

transcript from alignment at scaffold_362:718849..719507-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062270 ID=TCONS_00062270|Name=TCONS_00062270|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at scaffold_362:718849..719507- (Clytia hemisphaerica)
GAAAAAGTGTGATAAACTTCACCAAAACAAAAAAAAACTTGGTAGTAAAT
CCGCTTCAGATAAACTGAGAAAGGCTAATCTAGAAGGCAAAATTTTTATC
AACTGTAACCTTGCTCCCTATTCAAAATTTCTTTGGAGTTCCTGTAAGAA
ATTATATGATGAAAGATTGATTGACAGATTCTGGGTTTATAATGGAAGTG
TTTACATTGCAATCAATGAAAATAACGTTGATGTTCACACTAAAATAGAA
CATTTGTCAACTCTGGAGAAAATTTTTCCTGGATATGACTTTCATACTTT
TTAGATTATTTCTTGAATTTTGTTTATTTTTGATAATTCATCTTACGGGG
CCACTCCTTCTTTTTTTCCTTCCCGTTCGCTTGCTCTGTGCTTGGCTGTN
GAACATTTGTCAACTCTGGAGAAAATTCAATAAACAATAAATTGGTTCCT
GAAAATTAGTTTATTGTTCAACTTGGAGAGGGAATGTTTGTAAACATAAA
TTTTTTTTATAGAATTCTTTTTCATAGCAGTTATTTGGAGGGTCAAATTT
AGGCAGGGCTGTCGGATTTAGGACCACTCATGGTATCCACCCAATCATCC
TAAATTTACTTTAATTGCCCTATGAGTGCCAAAAAATTGTATTTAAAACT
ATAAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039027XLOC_039027Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062270-exon-scaffold_362-1575043694:719257..719507TCONS_00062270-exon-scaffold_362-1575043694:719257..719507Clytia hemisphaericaexon
TCONS_00062270-exon-scaffold_362-1575043694:718849..719103TCONS_00062270-exon-scaffold_362-1575043694:718849..719103Clytia hemisphaericaexon
TCONS_00062270-exon-scaffold_362-1510915933:719257..719507TCONS_00062270-exon-scaffold_362-1510915933:719257..719507Clytia hemisphaericaexon
TCONS_00062270-exon-scaffold_362-1510915933:718849..719103TCONS_00062270-exon-scaffold_362-1510915933:718849..719103Clytia hemisphaericaexon
TCONS_00062270-exon-scaffold_362-1491911889:719257..719507TCONS_00062270-exon-scaffold_362-1491911889:719257..719507Clytia hemisphaericaexon
TCONS_00062270-exon-scaffold_362-1491911889:718849..719103TCONS_00062270-exon-scaffold_362-1491911889:718849..719103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:718849..719507 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.412525	0.467842	1.18325	0.710126	3.78428	1.65395	2.67219	0.918815	0.6468	0.498157	0.923561	0.526045	0.463083	1.40825	0.148612	0.368594	0.53978	0.38937	0.142191	0	0.682839	0.496133	0	0	0.653792	0.925311	0.244887	0.622086	0	0.38056
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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