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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062313 ID=TCONS_00062313|Name=TCONS_00062313|organism=Clytia hemisphaerica|type=transcript|length=1427bp
cttgttcttaaaatattttgactgCATCCAAGCGTTttcttcttatatag
tttgttcttacgaaaaaacgtgtagtcatGATATATCATACTTAATGATT
CACTCCACCCGGACTTACTTTCCTTTTGAAATCATTCAAACTCTCCTAAA
TTATCTCCATTTTAGTAACCTTAGAGATATTTAAGTGGCTTATCGTCACC
AAAAATGAtttacttttataaaaaataatttttataagaTCTGGAGTGAT
GATAAATGACTTAACAAATAAACTCTTTGAATTTCTTAATCAACATATGA
AAGAATAAGGGACTTGTTTTATCTTCCTCCGATAAAGTTATTGTTCCGTC
TTTTTCAAGTCGCGGCGAATCATGGATTGGATCGTCTATATTCACTATCA
CCCATTTACTTAAAGGTTTCAGCTCTTCTGGAATGGGATAATTTTCCCCT
TTAAGTTTCATGATTATGTTTATGATGTCGTCACCACTAGCTTTCATAAG
AATTGCTTTCGCTTCATTTAAATATCGATCACGATCAGGGAACTTAAGGA
CTATATATAATTGCTGGAAGCTATCAACACgtaatttgaatttaaattgc
AAAAATGCAACCATGTTTTGAATGGAATCCATCCAACCGGACATTGTCAT
TGGAGTAAGCAATAGATGAAATTTTCGGGATTTGTTTCGGCAATCAAGAT
CATCATATTCTTTGAATCGGTCATAATCTTTATCGATTATCACATCAAGT
AAGACCTTGTGCACGTGTGGATTGAAAACTACAGACAAGTCATATATAAT
TTTTGGTCGAGGTGTGAACTTTTCAGATTGACTACATATGTCGCTGTCCT
GCCGGCACCACATTACCACGCTCATGTATTCCGTCGAGTCCTTCAAACAA
TCTACAATTAGTGATATTTCTTGCTCAGGTAAGGTAAAGTAATAGTATTC
ATTAATGAACAATAATGTTTGTTGGTTTTCTTCAACAGCTAATTTTTTAA
CCTCATTTAGAAAATCGAGAAGTACGTTTGTATCAGGTAGATCCATTGCT
TGAATCTTTGTCtctaaaaaattgtttgaattgTCTTTGTTCTGTACAAT
CGATCTATTTTCCAATGGCGAGTAAACCCAAACTGTAGTACAAGGAGTAT
CTAACAACGATTTAACAAGATACGTCAGTTGCGACATAGAGGAGACTAAG
ACCCGTTTTTTATTCATTAGAGGAACAATCGTCACATTCTTTACACTATC
ACATGCGAAAAAATCTTGTTTCATGTTACCAAAAATTTCTTCTGTTTTAA
CCAATGGCAAAGAAGttatccagaaaaaaattgcttttagATTCATCATC
AGTTTTGTTTGCTCGTCTATCAATTCTTTTCCTTTTGATCACTTCTCCTC
TCAATAATGAAGGAAACTTTTCTCTCC Run BLAST on NCBI protein sequence of TCONS_00062313-protein >TCONS_00062313-protein ID=TCONS_00062313-protein|Name=TCONS_00062313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MMNLKAIFFWITSLPLVKTEEIFGNMKQDFFACDSVKNVTIVPLMNKKRV
LVSSMSQLTYLVKSLLDTPCTTVWVYSPLENRSIVQNKDNSNNFLETKIQ
AMDLPDTNVLLDFLNEVKKLAVEENQQTLLFINEYYYFTLPEQEISLIVD
CLKDSTEYMSVVMWCRQDSDICSQSEKFTPRPKIIYDLSVVFNPHVHKVL
LDVIIDKDYDRFKEYDDLDCRNKSRKFHLLLTPMTMSGWMDSIQNMVAFL
QFKFKLRVDSFQQLYIVLKFPDRDRYLNEAKAILMKASGDDIINIIMKLK
GENYPIPEELKPLSKWVIVNIDDPIHDSPRLEKDGTITLSEEDKTSPLFF
HMLIKKFKEFIC Run BLAST on NCBI transcript from alignment at scaffold_362:568815..570241 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062313 ID=TCONS_00062313|Name=TCONS_00062313|organism=Clytia hemisphaerica|type=transcript|length=1427bp|location=Sequence derived from alignment at scaffold_362:568815..570241 (Clytia hemisphaerica)
GGAGAGAAAAGTTTCCTTCATTATTGAGAGGAGAAGTGATCAAAAGGAAA
AGAATTGATAGACGAGCAAACAAAACTGATGATGAATctaaaagcaattt
ttttctggataaCTTCTTTGCCATTGGTTAAAACAGAAGAAATTTTTGGT
AACATGAAACAAGATTTTTTCGCATGTGATAGTGTAAAGAATGTGACGAT
TGTTCCTCTAATGAATAAAAAACGGGTCTTAGTCTCCTCTATGTCGCAAC
TGACGTATCTTGTTAAATCGTTGTTAGATACTCCTTGTACTACAGTTTGG
GTTTACTCGCCATTGGAAAATAGATCGATTGTACAGAACAAAGAcaattc
aaacaattttttagaGACAAAGATTCAAGCAATGGATCTACCTGATACAA
ACGTACTTCTCGATTTTCTAAATGAGGTTAAAAAATTAGCTGTTGAAGAA
AACCAACAAACATTATTGTTCATTAATGAATACTATTACTTTACCTTACC
TGAGCAAGAAATATCACTAATTGTAGATTGTTTGAAGGACTCGACGGAAT
ACATGAGCGTGGTAATGTGGTGCCGGCAGGACAGCGACATATGTAGTCAA
TCTGAAAAGTTCACACCTCGACCAAAAATTATATATGACTTGTCTGTAGT
TTTCAATCCACACGTGCACAAGGTCTTACTTGATGTGATAATCGATAAAG
ATTATGACCGATTCAAAGAATATGATGATCTTGATTGCCGAAACAAATCC
CGAAAATTTCATCTATTGCTTACTCCAATGACAATGTCCGGTTGGATGGA
TTCCATTCAAAACATGGTTGCATTTTTgcaatttaaattcaaattacGTG
TTGATAGCTTCCAGCAATTATATATAGTCCTTAAGTTCCCTGATCGTGAT
CGATATTTAAATGAAGCGAAAGCAATTCTTATGAAAGCTAGTGGTGACGA
CATCATAAACATAATCATGAAACTTAAAGGGGAAAATTATCCCATTCCAG
AAGAGCTGAAACCTTTAAGTAAATGGGTGATAGTGAATATAGACGATCCA
ATCCATGATTCGCCGCGACTTGAAAAAGACGGAACAATAACTTTATCGGA
GGAAGATAAAACAAGTCCCTTATTCTTTCATATGTTGATTAAGAAATTCA
AAGAGTTTATTTGTTAAGTCATTTATCATCACTCCAGAtcttataaaaat
tattttttataaaagtaaaTCATTTTTGGTGACGATAAGCCACTTAAATA
TCTCTAAGGTTACTAAAATGGAGATAATTTAGGAGAGTTTGAATGATTTC
AAAAGGAAAGTAAGTCCGGGTGGAGTGAATCATTAAGTATGATATATCat
gactacacgttttttcgtaagaacaaactatataagaagaaAACGCTTGG
ATGcagtcaaaatattttaagaacaag Coding sequence (CDS) from alignment at scaffold_362:568815..570241 >TCONS_00062313 ID=TCONS_00062313|Name=TCONS_00062313|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_362:568815..570241 (Clytia hemisphaerica)
ATGATGAATctaaaagcaatttttttctggataaCTTCTTTGCCATTGGT
TAAAACAGAAGAAATTTTTGGTAACATGAAACAAGATTTTTTCGCATGTG
ATAGTGTAAAGAATGTGACGATTGTTCCTCTAATGAATAAAAAACGGGTC
TTAGTCTCCTCTATGTCGCAACTGACGTATCTTGTTAAATCGTTGTTAGA
TACTCCTTGTACTACAGTTTGGGTTTACTCGCCATTGGAAAATAGATCGA
TTGTACAGAACAAAGAcaattcaaacaattttttagaGACAAAGATTCAA
GCAATGGATCTACCTGATACAAACGTACTTCTCGATTTTCTAAATGAGGT
TAAAAAATTAGCTGTTGAAGAAAACCAACAAACATTATTGTTCATTAATG
AATACTATTACTTTACCTTACCTGAGCAAGAAATATCACTAATTGTAGAT
TGTTTGAAGGACTCGACGGAATACATGAGCGTGGTAATGTGGTGCCGGCA
GGACAGCGACATATGTAGTCAATCTGAAAAGTTCACACCTCGACCAAAAA
TTATATATGACTTGTCTGTAGTTTTCAATCCACACGTGCACAAGGTCTTA
CTTGATGTGATAATCGATAAAGATTATGACCGATTCAAAGAATATGATGA
TCTTGATTGCCGAAACAAATCCCGAAAATTTCATCTATTGCTTACTCCAA
TGACAATGTCCGGTTGGATGGATTCCATTCAAAACATGGTTGCATTTTTg
caatttaaattcaaattacGTGTTGATAGCTTCCAGCAATTATATATAGT
CCTTAAGTTCCCTGATCGTGATCGATATTTAAATGAAGCGAAAGCAATTC
TTATGAAAGCTAGTGGTGACGACATCATAAACATAATCATGAAACTTAAA
GGGGAAAATTATCCCATTCCAGAAGAGCTGAAACCTTTAAGTAAATGGGT
GATAGTGAATATAGACGATCCAATCCATGATTCGCCGCGACTTGAAAAAG
ACGGAACAATAACTTTATCGGAGGAAGATAAAACAAGTCCCTTATTCTTT
CATATGTTGATTAAGAAATTCAAAGAGTTTATTTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062313-exon-scaffold_362-1491911889:568815..570241 | TCONS_00062313-exon-scaffold_362-1491911889:568815..570241 | Clytia hemisphaerica | exon |
| TCONS_00062313-exon-scaffold_362-1510915933:568815..570241 | TCONS_00062313-exon-scaffold_362-1510915933:568815..570241 | Clytia hemisphaerica | exon |
| TCONS_00062313-exon-scaffold_362-1575043694:568815..570241 | TCONS_00062313-exon-scaffold_362-1575043694:568815..570241 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:568815..570241 . |
Blast
The following BLAST results are available for this feature:
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