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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062331 ID=TCONS_00062331|Name=TCONS_00062331|organism=Clytia hemisphaerica|type=transcript|length=863bp
CCAGAAAACAATCATGGACAAGAAGCAGTTACTTTTGTTGGTGAACAAGA
GAAACTCTTAAAAAGAGGTACAAAACTCGGTGTCATCACTGTCCTGTCAC
CAGAatggattttcagattttcaatcAGATTGCATTCGTTGGATAATGTT
GGAACATTCGTTTATTGCACAGTTTTCCACCTCACCCAGAAGAAGAATAA
TGCCAATTATGGGGATAGAACCCCAAGTATGTCCATCGCAGGTAATCCGA
AGCTGGAAAGCTTAAGGATCAATTCAGCCGTGAATGGTGATACTTCATAT
CGATGGAACTATCCTTTCACCCTAGCAGTCAACGAAACTATGGATGTTGA
GATTCATCAACGATACATAAGCAACGGTAAATATCGATATTTCATTCGCA
TCAATGAAGAAGATATTCATTCTGTCGTCAATACCGAAGCAAAACAATTC
TATAATGTTAAAGTGATTGCTGGTCAAGAATTCACTGGTGCTGAAGTTTG
CCCTGCATCaattaaaaatgtcaaacacacgaactttttgtaaaataaaa
acgTGGATATTACAAATTGCAcgtattttttagtattttattcAGGATGA
ATCTCTCAAGGTTTAGCTTTTTAAGCGATGGTTTATATGCAGCAAAAGAT
AATAAAATATGGGGATATAGGGGCATCAATACACATTTTCGACCGTGgcc
gcgcggtcaggcgcgtgccacttaattattttattatcctcgtctaaact
cgatccaatccttttttgacacatttttctattgtctataggtacGTATA
AAGGACTAGgatggttttagtgggataaagcggacaaaaaatgcccacgG
GGCAATtggcgac Run BLAST on NCBI transcript from alignment at scaffold_363:133370..136551+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062331 ID=TCONS_00062331|Name=TCONS_00062331|organism=Clytia hemisphaerica|type=transcript|length=3182bp|location=Sequence derived from alignment at scaffold_363:133370..136551+ (Clytia hemisphaerica)
CCAGAAAACAATCATGGACAAGAAGCAGTTACTTTTGTTGGTGAACAAGG
TAAGAGAAATCTCAGggatttatttttgtgaaataaaAAGCAAACTATCA
ACCCTTAGCCACTCAGTCAGCATTTTAAGAAACTGGTAATGAATTCTCGG
CGCACGGCATTTTTTGACTACTACTAAATGAAACTAACTCACCAAAACTC
TAGAGACATTTCCCCGAGTCTCAGCGATGGAGTGCAAACTATTAGCATTC
GAATAACTTTAACCCACAGTTATcctatataaaacactagatagagctta
TCCTACCCTACTTTAAGCAAAATAATTGGCCATCTTGAATGAAGtaagta
gctctatctagtgttttatataagatatctttGCTTTGACCTTGCTTTAT
CACTTCAATGCAAGGGTATCTCACATTTTTCACGAAAGCCCATCATACAC
TTGTGTTTTCAATACCGTCGTCGAGAAgaattttccttgtattttcgtTG
CCAATCTCCCCAAAAGCTGACCACGCTGCTAAGGGATGATGGGTGTATTT
TATACTTAACTGGCTTGTGACACCAGAGCAAAAGCTTTCTTTTATTTCAG
AGAAACTCTTAAAAAGAGGTACAAAACTCGGTGTCATCACTGTCCTGTCA
CCAGAatggattttcagattttcaatcAGATTGCATTCGTTGGATAATGT
TGGAACATTCGTTTATTGCACAGTTTTCCACCTCACCCAGAAGAAGAATA
ATGCCAATTATGGGGATAGAACCCCAAGTATGTCCATCGCAGGTAAgcaa
tttttgataattattcTTTGAACATAGGTGTAAGATAAATAATTCAGCTC
AAACTGaaaataacaagtgatacttttatggacctacctggttatgcatt
taacacatatataattgatatctacatgagcgtgaccattaaacaatcat
tcagaacacaaatagtgacgatctattaaaactaatcgtttgtttcttat
aaaaaaaacgtttagaaaccaaaattccatgctcttgaaatgttctttca
tattcattattcaagactttgtgagcaaaaaaacatctctcataaaaaaa
ttgagtaatttggctaagaacattgatgtatgcttattaatagtgattct
tatagataaacatgcgttttttgagccaaaaaatcttttttgaaaaatta
gcttgagccatcttttacctatgatggtaccctactttcatgcaaaaaat
cagaaaaagttaatgatctaatttttcacaaagtccaaaaaacccgtttt
ttagccgtttgttggcccaaatttgccccccAATTTTTTTTTTGAAAGTC
GGGCTCCGTCACATTCgagggtttatagttatgcatctttgtgcaaaaaa
tcataaagaatcaaagagccaatctcgagaaaagctaatacctaagtaat
tgataatttgcttatagataaatattgaatttggccagtttttctataaa
aacacgccaagaaaccaaaatttcatgtctaaacacacacNttataaata
aatattgaatttggccagtttttctataaaaacacgccaagaaaccaaaa
tttcatgtctaaacacacacattcttcaaaagtaagccctcctgagcaaa
aaaaacatttatctcataaaaaaattgagtaatttaactaagaacattga
tgtatgcttctgaatagtgattcttatagataaacatgtgttttttgagc
caacaaaatttttttgaaaaaatctgcttgagccatcttttacctatgat
ggtaaaAATaggatgcaaaaaatcagaaaaagctaatgatccaatttttc
agaaagtccaaaaaacccgttttttagccgttcgTTGGCcccaatttgcc
caaaaaattttttttctcgaaaatcgggctccgtcacattcgagggctta
tagttacacatctgtgtgcaaaaaatcagaaaaaactaatgagccaatca
cgaggaaagctaaggacgaacgaacgaacgaacgaacgaacgaacgaacg
aacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgca
cgcacgaacgaacggacaaaggtcaatttataggacctccaccccaccgg
ggtaggtccaacaacgGACCCACGGTATGACCCAAACATACCCTGAAGAT
TTTCGGGATATGTTCAGGCCATATTCGGGCcacaaaattttggatttttg
ggtCATGTTCGGGACTTTTTTAGGTTCAAAACCGGCCATATCGGTCGTAA
ATAATATCGCTCCTTTTATGTAAGATCTGCATGCTTGTATATTAGTTGAC
CTGGTTATCACGATTGAACCATGTCTCTTAATCGGGAAGCACTGTTACGA
TAAGTTTACGCCCGTACTCGAATGCGACcagaaggctcccttttctttAG
CTGTCCACCCGAAGAAAGGAGAGGGCGCCTCCCTTCCCTGGAATTATCCA
CTTAGTTTTTGAGCAATAAGTAGAGAAGCTTTCTAACAGTTAGTAACACA
TCTTTTCTAGGTAATCCGAAGCTGGAAAGCTTAAGGATCAATTCAGCCGT
GAATGGTGATACTTCATATCGATGGAACTATCCTTTCACCCTAGCAGTCA
ACGAAACTATGGATGTTGAGATTCATCAACGATACATAAGCAACGGTAAA
TATCGATATTTCATTCGCATCAATGAAGAAGATATTCATTCTGTCGTCAA
TACCGAAGCAAAACAATTCTATAATGTTAAAGTGATTGCTGGTCAAGAAT
TCACTGGTGCTGAAGTTTGCCCTGCATCaattaaaaatgtcaaacacacg
aactttttgtaaaataaaaacgTGGATATTACAAATTGCAcgtatttttt
agtattttattcAGGATGAATCTCTCAAGGTTTAGCTTTTTAAGCGATGG
TTTATATGCAGCAAAAGATAATAAAATATGGGGATATAGGGGCATCAATA
CACATTTTCGACCGTGgccgcgcggtcaggcgcgtgccacttaattattt
tattatcctcgtctaaactcgatccaatccttttttgacacatttttcta
ttgtctataggtacGTATAAAGGACTAGgatggttttagtgggataaagc
ggacaaaaaatgcccacgGGGCAATtggcgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062331-exon-scaffold_363-1491911889:133370..133418 | TCONS_00062331-exon-scaffold_363-1491911889:133370..133418 | Clytia hemisphaerica | exon |
| TCONS_00062331-exon-scaffold_363-1510915933:133370..133418 | TCONS_00062331-exon-scaffold_363-1510915933:133370..133418 | Clytia hemisphaerica | exon |
| TCONS_00062331-exon-scaffold_363-1575043694:133370..133418 | TCONS_00062331-exon-scaffold_363-1575043694:133370..133418 | Clytia hemisphaerica | exon |
| TCONS_00062331-exon-scaffold_363-1491911889:133970..134161 | TCONS_00062331-exon-scaffold_363-1491911889:133970..134161 | Clytia hemisphaerica | exon |
| TCONS_00062331-exon-scaffold_363-1510915933:133970..134161 | TCONS_00062331-exon-scaffold_363-1510915933:133970..134161 | Clytia hemisphaerica | exon |
| TCONS_00062331-exon-scaffold_363-1575043694:133970..134161 | TCONS_00062331-exon-scaffold_363-1575043694:133970..134161 | Clytia hemisphaerica | exon |
| TCONS_00062331-exon-scaffold_363-1491911889:135930..136551 | TCONS_00062331-exon-scaffold_363-1491911889:135930..136551 | Clytia hemisphaerica | exon |
| TCONS_00062331-exon-scaffold_363-1510915933:135930..136551 | TCONS_00062331-exon-scaffold_363-1510915933:135930..136551 | Clytia hemisphaerica | exon |
| TCONS_00062331-exon-scaffold_363-1575043694:135930..136551 | TCONS_00062331-exon-scaffold_363-1575043694:135930..136551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_363 | supercontig | scaffold_363:133370..136551 + |
Blast
The following BLAST results are available for this feature:
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