TCONS_00062353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062353
Unique NameTCONS_00062353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062353 ID=TCONS_00062353|Name=TCONS_00062353|organism=Clytia hemisphaerica|type=transcript|length=3836bp
attttgtctttttatgttgaatattagtacaagacaccatttagaaacca
ttttgaccctttactgggctttcgtagtcttaaaatggacaaaaaatgcc
attttactcatttttcgctttattgcgaatcaaagaccccctggggaatg
ctggatttttgacttaggaggttaaaaattgcgcaaaatgtcttacaata
gattaaattttcacacaaaaatattacactttgaattttttgacatcatg
ctaaaaatggtagttgacgatctaccctatcAATATAgtatgattgacag
attgaagttttcacccgcgcaggagttcgcggagcgttctcggctcaatc
cttggaccgcgctaaaaatggtagactgagctgtgatagatcatttcgat
ggaagttgttgNNNNNNNNNNNNNNNNNgacagaaaatcgtttgttttat
tgtcaatgatgacagtgcggttattaattttgttagatctgacaaattga
tgtttgtaagtgcactttatagttttgattcccattgaagaatcatattc
tggttttcatgttattagatgctgttttagagctttaggtctacactgta
agagaagaaagattctttttcaatcacTGATTCCAACTTTCACAtaattc
ctatctctaaagaagggtgtcgaaattagaagacggcgggatgtcgagat
tagaccactTACGGTAGGAGTCCACACCCCCTGGAAAGtggaattttgtg
aaaaagggcctAGAAAGTGACTATTGATGCCAGTTTTGGAGgagagaacc
ccctggaaacctttaataacccccttggaaaatccaaaaatgaccaaaag
ccccttggaaaatcaaggctcagaccCCCTTGGAAAAGTTCCCCTTATTT
ATTCCCCCTAATTATTTTagcactagaaagctgaaaacctcagctttcag
atggtgtatgcttttttttcaaaaaattgcaatttcttctatttttcgaa
ttcCAGAcagcctgtagattttcaaataagcAGCATGTGCTAGATTGTAG
TCTAATCTTACCAtgggtttactaaaaagaaaacgcgattgaaaagatga
accagctcattCAAGAATTTTGCGGTGCCATGTCAGCGCTAAGTCATGTT
TTCACCTTGACGCCGGTGGTCATTAATGATTTCCAGGTTTTTTTTTCCTC
ATAAGATGGCATCAAGTTTTGTTATTTGTGTGATATTTGGGGTAATTTTG
AAAAGAGGGCTAGAAGTGAGTTTGCAATTCTTATCTTAAGCTTATCAAGA
CAAGATCTATGTAAGACTTTTCTATGCAGCAATAAAACTTTTTCGGTCAG
TACGTTTTTAGGTGGGGTTGGTCAGATGACATCAAACTAATAAGTCCAGC
CTTGTCCAATTTTAATTCGAAGGTTAGAAGAAAGGACATCTGCTCAAATT
ACTCAGTTATTTTGGGAGAGAGTTGAACAGGATTGGCTAAATTTGACAAG
AAATTATATCAGATAATGTGTAAGACGGTTGATGTTCTGGGGCTCCTACA
ATTGACCAAGTCTGGGTTGAAAAACAGGTCATTCACCATCTGACTGGTTG
TTATTTGGTATAAGGTTTTTGAGGAAGCTCCATGTCAGTCCATGTGGTTC
ATCTATTGGTCATCTTGACCAATGTGACTTTTCAGGGTGGTGGATTTTCC
GAATCAAAACAGTTACTCTGGACAATCTCAAGACTTTGTCTGTCAGCTTA
TGCGGTGTTTGAGTTTACAGTCATTTGACATCACCACTCCAAGGTCAACA
TAATCATACTTGTGAATTTCTTCTACTTGTGTAGCTTGTCTTTGCTGTAA
CTTCAGTTTGACACCTTTGAACTCCATGGTGTTATCAACcaaccaataat
aaactgaattTAGGTCTCCTTGAAGTTTTAGAGTATCCTCAATGTTTTCT
AACGTCTTTGATAATTCTTGTGTCATCTGCAAAACTTTGTGTTGAAGAGT
GTTGGGCTTCATCAATGTCCCCCTTAAAGATTAGGAAGATAGTCAGAGTC
TCCTTTTTCCACCATCATGGTGAAGTTGAGCTCCAAATCCTGGACTAACG
AGTTTTGAGCTATAACTTTTGGATAGCTTTTAAAAGATTGTAATCACAAT
TATAACTAACAAATTTTTTATTAAGTATTGTGCaataaaaagcctaaaaa
gaccaatttttgTTAACAAAGTTATTGAATTTGTAGGAAGGTTTTGTATT
TTGCTTTAAGCtgtatttgttaaaaaattttaatcataaaaatattcaaC
TGACTATTCAACTGCTAAGCAGTTTTGCCATAACAAAGACAAgcttgaag
aagaagaagaaaatctccaatttttaaaactttcaacaaaattacTTGTC
GTTATGTATTGAAAGACGTCTGAAGACgttcaacaacaaaaattttgttt
gataaataTTTTGTAGTGGTACTTTActagaatattttttaaacaaatga
cATTTATGTACCAGACGAATAAATAAATGTGATTGCTCATACCTGGTTTT
CACAATCTGTGTgtgtttaatttttgaaatgttttcataATATACTGTGT
ATTGCTATCAGTTCAATAAGCCTGTATTTACACCTCTACTGATTCTCAAA
AGCATCTCAGGCAAGTTAGGACTCCCTCCTTTGCAACAATGAATTTATCT
CGAAGTAGAAAGCTTTTTTACAACAATCTGGAGGGTAAGTTTCAGAGTAA
ATTTATACCTGGAAATGCCTCGAAGTAGATCAAATTCTCGCTCGAGGAGT
CGTAGTACATCAcccaagaaaagaaaaagtaagGATCGGGAAAGAGAGCG
TGATAGAGACAGAGATCGGGATCGGCATAAGAGAAGCAGTCATCGCCATC
GTAGTCGGTCACCTGCTCGATCTAAAAGAAGAAGTCGCAGCAGATCACCA
AGTGTTGATCGGTTTGGACGGTCCACCAAACGCAGGGATAAATTTGCTGA
TGAAGATGATGATACCAGAGTGGAACCaggaatgaaaaatgaagagatGG
AAAGACAAAGAAAAATTCGAGCAACAGAGATGCAAGCGAAATTTATTGAA
GAAGAAACGCAAAGGCGGATCGAAGATGTGGTCATGAAGAGAGTAGAAGA
GGAGTTAGCCAAACGAAAAATCGATGTTGACGAAGAAGTGATGAGGAAAG
TAGAAGAAGCCAAGAAACACGTTGAACATCATTTGGAAGGCGAATACGAA
CGAAGGACGAAAGAAATTGCTGAACAGTTCAAATTAAAAGAGGAGCAATT
AAAGCAAGAAATCGAAAGGCTGAAAAAAGAAATCGACCTCGCCTATTTGA
AAGTCCAAGATACAGAGAAAAAATTGGCCGAAGAACGACTCACTATGCTC
GAAAAACAGCGTGGCTTAGAGGACGAAAAGCGACAAATCGAAGCGGACTT
TaagaaaaacgaaagaaaagcACAAGAAGTGATATTAAATAAAAAGAACT
CGAGACCAAAATTGTCTTTTGGATTGAAAAGTCTACCCAAATAAAATGAA
TGTCCGGGTAAGATTATGTGTTAGATGGACACTGTAAATATGTTATCTGA
TAAATGGTCATAAGTTGAACGAACATTTCGTGTATTGTTGACACGATTTC
ACGTCTAATGGTCATAAATTGAACGAACATTTCGTGTATACGTTACATGT
TTCTTGGAGAGGTACTACTGGGGGATTACGTCGTAAGTtttaaaatcaca
ttttttctttagaatttattattttatttgaatattatgtatatttttat
tctttttacaaaatatgttaaaagtaataaaaaacg
Run BLAST on NCBI

protein sequence of TCONS_00062353-protein

>TCONS_00062353-protein ID=TCONS_00062353-protein|Name=TCONS_00062353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MPRSRSNSRSRSRSTSPKKRKSKDRERERDRDRDRDRHKRSSHRHRSRSP
ARSKRRSRSRSPSVDRFGRSTKRRDKFADEDDDTRVEPGMKNEEMERQRK
IRATEMQAKFIEEETQRRIEDVVMKRVEEELAKRKIDVDEEVMRKVEEAK
KHVEHHLEGEYERRTKEIAEQFKLKEEQLKQEIERLKKEIDLAYLKVQDT
EKKLAEERLTMLEKQRGLEDEKRQIEADFKKNERKAQEVILNKKNSRPKL
SFGLKSLPK
Run BLAST on NCBI

transcript from alignment at scaffold_363:76051..81583-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062353 ID=TCONS_00062353|Name=TCONS_00062353|organism=Clytia hemisphaerica|type=transcript|length=5533bp|location=Sequence derived from alignment at scaffold_363:76051..81583- (Clytia hemisphaerica)
ATTTTGTCTTTTTATGTTGAATATTAGTACAAGACACCATTTAGAAACCA
TTTTGACCCTTTACTGGGCTTTCGTAGTCTTAAAATGGACAAAAAATGCC
ATTTTACTCATTTTTCGCTTTATTGCGAATCAAAGACCCCCTGGGGAATG
CTGGATTTTTGACTTAGGAGGTTAAAAATTGCGCAAAATGTCTTACAATA
GATTAAATTTTCACACAAAAATATTACACTTTGAATTTTTTGACATCATG
CTAAAAATGGTAGTTGACGATCTACCCTATCAATATAGTATGATTGACAG
ATTGAAGTTTTCACCCGCGCAGGAGTTCGCGGAGCGTTCTCGGCTCAATC
CTTGGACCGCGCTAAAAATGGTAGACTGAGCTGTGATAGATCATTTCGAT
GGAAGTTGTTGNNNNNNNNNNNNNNNNNGACAGAAAATCGTTTGTTTTAT
TGTCAATGATGACAGTGCGGTTATTAATTTTGTTAGATCTGACAAATTGA
TGTTTGTAAGTGCACTTTATAGTTTTGATTCCCATTGAAGAATCATATTC
TGGTTTTCATGTTATTAGATGCTGTTTTAGAGCTTTAGGTCTACACTGTA
AGAGAAGAAAGATTCTTTTTCAATCACTGATTCCAACTTTCACATAATTC
CTATCTCTAAAGAAGGGTGTCGAAATTAGAAGACGGCGGGATGTCGAGAT
TAGACCACTTACGGTAGGAGTCCACACCCCCTGGAAAGTGGAATTTTGTG
AAAAAGGGCCTAGAAAGTGACTATTGATGCCAGTTTTGGAGGAGAGAACC
CCCTGGAAACCTTTAATAACCCCCTTGGAAAATCCAAAAATGACCAAAAG
CCCCTTGGAAAATCAAGGCTCAGACCCCCTTGGAAAAGTTCCCCTTATTT
ATTCCCCCTAATTATTTTAGCACTAGAAAGCTGAAAACCTCAGCTTTCAG
ATGGTGTATGCTTTTTTTTCAAAAAATTGCAATTTCTTCTATTTTTCGAA
TTCCAGACAGCCTGTAGATTTTCAAATAAGCAGCATGTGCTAGATTGTAG
TCTAATCTTACCATGGGTTTACTAAAAAGAAAACGCGATTGAAAAGATGA
ACCAGCTCATTCAAGAATTTTGCGGTGCCATGTCAGCGCTAAGTCATGTT
TTCACCTTGACGCCGGTGGTCATTAATGATTTCCAGGTTTTTTTTTCCTC
ATAAGATGGCATCAAGTTTTGTTATTTGTGTGATATTTGGGGTAATTTTG
AAAAGAGGGCTAGAAGTGAGTTTGCAATTCTTATCTTAAGCTTATCAAGA
CAAGATCTATGTAAGACTTTTCTATGCAGCAATAAAACTTTTTCGGTCAG
TACGTTTTTAGGTGGGGTTGGTCAGATGACATCAAACTAATAAGTCCAGC
CTTGTCCAATTTTAATTCGAAGGTTAGAAGAAAGGACATCTGCTCAAATT
ACTCAGTTATTTTGGGAGAGAGTTGAACAGGATTGGCTAAATTTGACAAG
AAATTATATCAGATAATGTGTAAGACGGTTGATGTTCTGGGGCTCCTACA
ATTGACCAAGTCTGGGTTGAAAAACAGGTCATTCACCATCTGACTGGTTG
TTATTTGGTATAAGGTTTTTGAGGAAGCTCCATGTCAGTCCATGTGGTTC
ATCTATTGGTCATCTTGACCAATGTGACTTTTCAGGGTGGTGGATTTTCC
GAATCAAAACAGTTACTCTGGACAATCTCAAGACTTTGTCTGTCAGCTTA
TGCGGTGTTTGAGTTTACAGTCATTTGACATCACCACTCCAAGGTCAACA
TAATCATACTTGTGAATTTCTTCTACTTGTGTAGCTTGTCTTTGCTGTAA
CTTCAGTTTGACACCTTTGAACTCCATGGTGTTATCAACCAACCAATAAT
AAACTGAATTTAGGTCTCCTTGAAGTTTTAGAGTATCCTCAATGTTTTCT
AACGTCTTTGATAATTCTTGTGTCATCTGCAAAACTTTGTGTTGAAGAGT
GTTGGGCTTCATCAATGTCCCCCTTAAAGATTAGGAAGATAGTCAGAGTC
TCCTTTTTCCACCATCATGGTGAAGTTGAGCTCCAAATCCTGGACTAACG
AGTTTTGAGCTATAACTTTTGGATAGCTTTTAAAAGATTGTAATCACAAT
TATAACTAACAAATTTTTTATTAAGTATTGTGCAATAAAAAGCCTAAAAA
GACCAATTTTTGTTAACAAAGTTATTGAATTTGTAGGAAGGTTTTGTATT
TTGCTTTAAGCTGTATTTGTTAAAAAATTTTAATCATAAAAATATTCAAC
TGACTATTCAACTGCTAAGCAGTTTTGCCATAACAAAGACAAGCTTGAAG
AAGAAGAAGAAAATCTCCAATTTTTAAAACTTTCAACAAAATTACTTGTC
GTTATGTATTGAAAGACGTCTGAAGACGTTCAACAACAAAAATTTTGTTT
GATAAATATTTTGTAGTGGTACTTTACTAGAATATTTTTTAAACAAATGA
CATTTATGTACCAGACGAATAAATAAATGTGATTGCTCATACCTGGTTTT
CACAATCTGTGTGTGTTTAATTTTTGAAATGTTTTCATAATATACTGTGT
ATTGCTATCAGTTCAATAAGCCTGTATTTACACCTCTACTGATTCTCAAA
AGCATCTCAGGCAAGTTAGGACTCCCTCCTTTGCAACAATGAATTTATCT
CGAAGTAGAAAGCTTTTTTACAACAATCTGGAGGGTAAGTTTCAGGTACG
TAGTATTATATTTGAGCTTTGAAAGTTCTTTTTATACAGCTAGTCCACTT
AATCAAAAACAATAGCTCTTTTTTAAGACTTTTTTTTAATAAATCTTCGA
ATAAAATTTTGTAATAATTTTCAATACCCTAAAAACTGATCTTGATTTAG
TGTAATCTGATCTAGTCTTTGTTTGAAACTAGACTTTTTTTTAAATTGGT
GCCGACACAAGCATTTATAGAGAACCCTTTTCTAATATTTGGATCAAACT
TTTAGAGTAAATTTATACCTGGAAATGCCTCGAAGTAGATCAAATTCTCG
CTCGAGGAGTCGTAGTACATCACCCAAGAAAAGAAAAAGTAAGGTAAGAG
CAGGATGGCATCGTTTTCAAACTTTTTTTAAATACAGCAGTTTTGATTTG
GCACTGTTTCCAATTGTGATAATTATATTTTGTTTATCTTGTCTTATTTC
AACTGGGCTTTCTAGCCTTTCTATTGTAGCCGTCTATAGCTAATTGGTCT
AAGTAAATCTCTCATTCTTTTTTTGTGTAATTTCAGGATCGGGAAAGAGA
GCGTGATAGAGACAGAGATCGGGATCGGCATAAGAGAAGCAGTCATCGCC
ATCGTAGTCGGTCACCTGCTCGATCTAAAAGAAGAAGTCGCAGCAGATCA
CCAAGTGTTGATCGGTTTGGACGGTCCACCAAACGCAGGGATAAATTTGC
TGATGAAGATGATGATACCAGAGTGGAACCAGGAATGAAAAATGAAGAGA
TGGAAAGACAAAGAAAAATGTAAGCCAAGTCTTAGCCGAAATTATCTTTT
CAACAAGGTTCTGATTCCAGCTGATTCTGTTTTCCCATCAAGATCAAAAA
TATACTAAAATGTACAGACTATCAATGTTTTTTTGGAATTTTGTTGTTCC
CGTATACGCTGGTATACGTGTTATCACCCTCTCTGTTGTGTTTAAGATCT
CTCATTAAATTTTATATGAAATTGATGCGTTAGTGGTATTTCTTAGCCTT
CTTTGAATGTGAACTGAATTATGATATGTTCCTGACAGGACAAAAATAAA
TCATCAATCACTGATTCTATATGGCTGTAATTTTACAAGTATCTTGTAAA
TGTGTCCTGTTCGCCCTTTTGATGTTGTAACATAAAAAACTATTGATGAA
TTTGGTTATTGCTTTTTCAGTCGAGCAACAGAGATGCAAGCGAAATTTAT
TGAAGAAGAAACGCAAAGGCGGATCGAAGATGTGGTCATGAAGAGAGTAG
AAGAGGAGTTAGCCAAACGAAAAATCGATGTTGACGAAGAAGTGATGAGG
AAAGTAGAAGAAGCCAAGAAACACGTTGAACATCATTTGGAAGGCGAATA
CGAACGAAGGACGAAAGAAATTGCTGAACAGTTCAAATTAAAAGAGGTAC
GTTTTCACTTTATTTAGGATGTTCGATTGGTTCTTTGAATTCATGATATG
CACCACTGGAGAGTCTTCTGAGAACTTTTAAAATTTTCGATCCAATACAT
CACTTAAACAATAGAAAAGGTGACGTATTTGATGAAAAAACAAACAGAAA
AGTTGCATAATTTCGTGAAGTCATTGCAGTGGTGTGTAAGAGAAAGATTC
GAATTTCGGGGGGGGGGTCAAGTTGATTGTTCAGCTTAAGGGATTAATGT
TAAAGTTCGGACTACAAAAAAAGATTCAAATAATGGAGGTTCGACGAATA
AAGAGAGAGTTGACATTAACACATTTCCAGCCAAGTCAAAGACTTCATTA
CTCAATTCCTAGAGAAATATGAGAAACAAATAATGCAATTCCGTTTTTAA
GCAATATTCTTTTTGGAGTCTTTGTTCACACAGCAATAATATTTCTTCCT
TTTGTAGGAGCAATTAAAGCAAGAAATCGAAAGGCTGAAAAAAGAAATCG
ACCTCGCCTATTTGAAAGTCCAAGATACAGAGAAAAAATTGGTAGGTTTC
TGAACTATGAATGAAAGCACTTTCGATGTTTATTAGCTCTGAATCCTTCC
CTGTGTTATACATTTGAATTGCAATTCGCAACGTGATGCAGCCATTCAAT
ATTGACAACTCCACAAATGGCGAAAGTGGAAACGGAACTAGAAAGTTTGA
GTGGAGTTAACTTAATAACGGGGGAGGTTGCACCGTAATGCCTACGCCTT
TTTTTATGAATCGCCGTCAATACTGACAGCAAAAAATCCTTATTACTGAA
TTACCCTCGATTCTTTTTTCAACACTGAGACAGACATAAAAAGAGACTGA
TGCCGTAAATAGTTGTCCTTATTTATTTCAACCCTATTTTTTGACTCAAT
TGATTGATTTTTTTTCGTACTAGGCCGAAGAACGACTCACTATGCTCGAA
AAACAGCGTGGCTTAGAGGACGAAAAGCGACAAATCGAAGCGGACTTTAA
GAAAAACGAAAGAAAAGCACAAGAAGTGATATTAAATAAAAAGAACTCGA
GACCAAAATTGTCTTTTGGATTGAAAAGTCTACCCAAATAAAATGAATGT
CCGGGTAAGATTATGTGTTAGATGGACACTGTAAATATGTTATCTGATAA
ATGGTCATAAGTTGAACGAACATTTCGTGTATTGTTGACACGATTTCACG
TCTAATGGTCATAAATTGAACGAACATTTCGTGTATACGTTACATGTTTC
TTGGAGAGGTACTACTGGGGGATTACGTCGTAAGTTTTAAAATCACATTT
TTTCTTTAGAATTTATTATTTTATTTGAATATTATGTATATTTTTATTCT
TTTTACAAAATATGTTAAAAGTAATAAAAAACG

Coding sequence (CDS) from alignment at scaffold_363:76051..81583-

>TCONS_00062353 ID=TCONS_00062353|Name=TCONS_00062353|organism=Clytia hemisphaerica|type=CDS|length=3900bp|location=Sequence derived from alignment at scaffold_363:76051..81583- (Clytia hemisphaerica)
GCCGAAGAACGACTCACTATGCTCGAAAAACAGCGTGGCTTAGAGGACGA
AAAGCGACAAATCGAAGCGGACTTTAAGAAAAACGAAAGAAAAGCACAAG
AAGTGATATTAAATAAAAAGAACTCGAGACCAAAATTGTCTTTTGGATTG
AAAAGTCTACCCAAATAAGAGCAATTAAAGCAAGAAATCGAAAGGCTGAA
AAAAGAAATCGACCTCGCCTATTTGAAAGTCCAAGATACAGAGAAAAAAT
TGTCGAGCAACAGAGATGCAAGCGAAATTTATTGAAGAAGAAACGCAAAG
GCGGATCGAAGATGTGGTCATGAAGAGAGTAGAAGAGGAGTTAGCCAAAC
GAAAAATCGATGTTGACGAAGAAGTGATGAGGAAAGTAGAAGAAGCCAAG
AAACACGTTGAACATCATTTGGAAGGCGAATACGAACGAAGGACGAAAGA
AATTGCTGAACAGTTCAAATTAAAAGAGGATCGGGAAAGAGAGCGTGATA
GAGACAGAGATCGGGATCGGCATAAGAGAAGCAGTCATCGCCATCGTAGT
CGGTCACCTGCTCGATCTAAAAGAAGAAGTCGCAGCAGATCACCAAGTGT
TGATCGGTTTGGACGGTCCACCAAACGCAGGGATAAATTTGCTGATGAAG
ATGATGATACCAGAGTGGAACCAGGAATGAAAAATGAAGAGATGGAAAGA
CAAAGAAAAATATGCCTCGAAGTAGATCAAATTCTCGCTCGAGGAGTCGT
AGTACATCACCCAAGAAAAGAAAAAGTAAGGCCGAAGAACGACTCACTAT
GCTCGAAAAACAGCGTGGCTTAGAGGACGAAAAGCGACAAATCGAAGCGG
ACTTTAAGAAAAACGAAAGAAAAGCACAAGAAGTGATATTAAATAAAAAG
AACTCGAGACCAAAATTGTCTTTTGGATTGAAAAGTCTACCCAAATAAGA
GCAATTAAAGCAAGAAATCGAAAGGCTGAAAAAAGAAATCGACCTCGCCT
ATTTGAAAGTCCAAGATACAGAGAAAAAATTGTCGAGCAACAGAGATGCA
AGCGAAATTTATTGAAGAAGAAACGCAAAGGCGGATCGAAGATGTGGTCA
TGAAGAGAGTAGAAGAGGAGTTAGCCAAACGAAAAATCGATGTTGACGAA
GAAGTGATGAGGAAAGTAGAAGAAGCCAAGAAACACGTTGAACATCATTT
GGAAGGCGAATACGAACGAAGGACGAAAGAAATTGCTGAACAGTTCAAAT
TAAAAGAGGATCGGGAAAGAGAGCGTGATAGAGACAGAGATCGGGATCGG
CATAAGAGAAGCAGTCATCGCCATCGTAGTCGGTCACCTGCTCGATCTAA
AAGAAGAAGTCGCAGCAGATCACCAAGTGTTGATCGGTTTGGACGGTCCA
CCAAACGCAGGGATAAATTTGCTGATGAAGATGATGATACCAGAGTGGAA
CCAGGAATGAAAAATGAAGAGATGGAAAGACAAAGAAAAATATGCCTCGA
AGTAGATCAAATTCTCGCTCGAGGAGTCGTAGTACATCACCCAAGAAAAG
AAAAAGTAAGGCCGAAGAACGACTCACTATGCTCGAAAAACAGCGTGGCT
TAGAGGACGAAAAGCGACAAATCGAAGCGGACTTTAAGAAAAACGAAAGA
AAAGCACAAGAAGTGATATTAAATAAAAAGAACTCGAGACCAAAATTGTC
TTTTGGATTGAAAAGTCTACCCAAATAAGAGCAATTAAAGCAAGAAATCG
AAAGGCTGAAAAAAGAAATCGACCTCGCCTATTTGAAAGTCCAAGATACA
GAGAAAAAATTGTCGAGCAACAGAGATGCAAGCGAAATTTATTGAAGAAG
AAACGCAAAGGCGGATCGAAGATGTGGTCATGAAGAGAGTAGAAGAGGAG
TTAGCCAAACGAAAAATCGATGTTGACGAAGAAGTGATGAGGAAAGTAGA
AGAAGCCAAGAAACACGTTGAACATCATTTGGAAGGCGAATACGAACGAA
GGACGAAAGAAATTGCTGAACAGTTCAAATTAAAAGAGGATCGGGAAAGA
GAGCGTGATAGAGACAGAGATCGGGATCGGCATAAGAGAAGCAGTCATCG
CCATCGTAGTCGGTCACCTGCTCGATCTAAAAGAAGAAGTCGCAGCAGAT
CACCAAGTGTTGATCGGTTTGGACGGTCCACCAAACGCAGGGATAAATTT
GCTGATGAAGATGATGATACCAGAGTGGAACCAGGAATGAAAAATGAAGA
GATGGAAAGACAAAGAAAAATATGCCTCGAAGTAGATCAAATTCTCGCTC
GAGGAGTCGTAGTACATCACCCAAGAAAAGAAAAAGTAAGGCCGAAGAAC
GACTCACTATGCTCGAAAAACAGCGTGGCTTAGAGGACGAAAAGCGACAA
ATCGAAGCGGACTTTAAGAAAAACGAAAGAAAAGCACAAGAAGTGATATT
AAATAAAAAGAACTCGAGACCAAAATTGTCTTTTGGATTGAAAAGTCTAC
CCAAATAAGAGCAATTAAAGCAAGAAATCGAAAGGCTGAAAAAAGAAATC
GACCTCGCCTATTTGAAAGTCCAAGATACAGAGAAAAAATTGTCGAGCAA
CAGAGATGCAAGCGAAATTTATTGAAGAAGAAACGCAAAGGCGGATCGAA
GATGTGGTCATGAAGAGAGTAGAAGAGGAGTTAGCCAAACGAAAAATCGA
TGTTGACGAAGAAGTGATGAGGAAAGTAGAAGAAGCCAAGAAACACGTTG
AACATCATTTGGAAGGCGAATACGAACGAAGGACGAAAGAAATTGCTGAA
CAGTTCAAATTAAAAGAGGATCGGGAAAGAGAGCGTGATAGAGACAGAGA
TCGGGATCGGCATAAGAGAAGCAGTCATCGCCATCGTAGTCGGTCACCTG
CTCGATCTAAAAGAAGAAGTCGCAGCAGATCACCAAGTGTTGATCGGTTT
GGACGGTCCACCAAACGCAGGGATAAATTTGCTGATGAAGATGATGATAC
CAGAGTGGAACCAGGAATGAAAAATGAAGAGATGGAAAGACAAAGAAAAA
TATGCCTCGAAGTAGATCAAATTCTCGCTCGAGGAGTCGTAGTACATCAC
CCAAGAAAAGAAAAAGTAAGGCCGAAGAACGACTCACTATGCTCGAAAAA
CAGCGTGGCTTAGAGGACGAAAAGCGACAAATCGAAGCGGACTTTAAGAA
AAACGAAAGAAAAGCACAAGAAGTGATATTAAATAAAAAGAACTCGAGAC
CAAAATTGTCTTTTGGATTGAAAAGTCTACCCAAATAAGAGCAATTAAAG
CAAGAAATCGAAAGGCTGAAAAAAGAAATCGACCTCGCCTATTTGAAAGT
CCAAGATACAGAGAAAAAATTGTCGAGCAACAGAGATGCAAGCGAAATTT
ATTGAAGAAGAAACGCAAAGGCGGATCGAAGATGTGGTCATGAAGAGAGT
AGAAGAGGAGTTAGCCAAACGAAAAATCGATGTTGACGAAGAAGTGATGA
GGAAAGTAGAAGAAGCCAAGAAACACGTTGAACATCATTTGGAAGGCGAA
TACGAACGAAGGACGAAAGAAATTGCTGAACAGTTCAAATTAAAAGAGGA
TCGGGAAAGAGAGCGTGATAGAGACAGAGATCGGGATCGGCATAAGAGAA
GCAGTCATCGCCATCGTAGTCGGTCACCTGCTCGATCTAAAAGAAGAAGT
CGCAGCAGATCACCAAGTGTTGATCGGTTTGGACGGTCCACCAAACGCAG
GGATAAATTTGCTGATGAAGATGATGATACCAGAGTGGAACCAGGAATGA
AAAATGAAGAGATGGAAAGACAAAGAAAAATATGCCTCGAAGTAGATCAA
ATTCTCGCTCGAGGAGTCGTAGTACATCACCCAAGAAAAGAAAAAGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039069XLOC_039069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062353-exon-scaffold_363-1575043694:78839..81583TCONS_00062353-exon-scaffold_363-1575043694:78839..81583Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1575043694:78491..78578TCONS_00062353-exon-scaffold_363-1575043694:78491..78578Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1575043694:78065..78297TCONS_00062353-exon-scaffold_363-1575043694:78065..78297Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1575043694:77438..77663TCONS_00062353-exon-scaffold_363-1575043694:77438..77663Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1575043694:76893..76976TCONS_00062353-exon-scaffold_363-1575043694:76893..76976Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1575043694:76051..76510TCONS_00062353-exon-scaffold_363-1575043694:76051..76510Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1510915933:78839..81583TCONS_00062353-exon-scaffold_363-1510915933:78839..81583Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1510915933:78491..78578TCONS_00062353-exon-scaffold_363-1510915933:78491..78578Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1510915933:78065..78297TCONS_00062353-exon-scaffold_363-1510915933:78065..78297Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1510915933:77438..77663TCONS_00062353-exon-scaffold_363-1510915933:77438..77663Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1510915933:76893..76976TCONS_00062353-exon-scaffold_363-1510915933:76893..76976Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1510915933:76051..76510TCONS_00062353-exon-scaffold_363-1510915933:76051..76510Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1491911889:78839..81583TCONS_00062353-exon-scaffold_363-1491911889:78839..81583Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1491911889:78491..78578TCONS_00062353-exon-scaffold_363-1491911889:78491..78578Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1491911889:78065..78297TCONS_00062353-exon-scaffold_363-1491911889:78065..78297Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1491911889:77438..77663TCONS_00062353-exon-scaffold_363-1491911889:77438..77663Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1491911889:76893..76976TCONS_00062353-exon-scaffold_363-1491911889:76893..76976Clytia hemisphaericaexon
TCONS_00062353-exon-scaffold_363-1491911889:76051..76510TCONS_00062353-exon-scaffold_363-1491911889:76051..76510Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062353-proteinTCONS_00062353-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_363supercontigscaffold_363:76051..81583 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.4679	12.2313	12.4812	13.0393	47.4265	37.9252	37.5614	39.6625	25.0997	19.1948	18.5818	15.345	9.07271	9.6855	15.8513	18.2711	28.1277	24.4824	4.70347	8.05607	15.1396	13.2935	20.4825	16.4848	23.7859	27.4237	12.0484	9.25517	13.8491	15.0365
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR033371ARGLU1
Blast
[Close]
BLAST of TCONS_00062353 vs. Swiss-Prot (Human)
Match: ARGL1 (Arginine and glutamate-rich protein 1 OS=Homo sapiens GN=ARGLU1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.377e-18
Identity = 81/191 (42.41%), Postives = 124/191 (64.92%), Query Frame = 2 
Query: 2963 FGRSTKRRDKFADEDDDTRVEPGMKNEEMERQRKIRATEMQAKFIEEETQRRIEDVVMKRVEEELAKRKIDVDEEVMRKVEEAKKHVEHHLEGEYER-RTKEIAXXXXXXXXXXXXXXXXXXXXIDLAYLKVQDTEKKLAEERLTMLEKQRGLEDEKRQIEADFKKNERKAQEVILNKKNSRPKLSFGLKS 3532
            FGR+  +R      D+  + E   K  E ERQRKIR  E++ K IEEET RR+E++V KRVEEEL KRK +++ EV+R+VEEAK+ +E  L  E ER R  E+A Q   +EE+  +  E  +   +    K+ + + KLAEE+L ++E+QR + +E+ ++E + ++ +++ Q++IL K  SRPKLSF LK+
Sbjct:   85 FGRTVSKRSSL---DEKQKREEEEKKAEFERQRKIRQQEIEEKLIEEETARRVEELVAKRVEEELEKRKDEIEREVLRRVEEAKRIMEKQLLEELERQRQAELAAQKAREEEERAKREELERIL-EENNRKIAEAQAKLAEEQLRIVEEQRKIHEERMKLEQERQRQQKEEQKIILGKGKSRPKLSFSLKT 271
The following BLAST results are available for this feature:
BLAST of TCONS_00062353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARGL14.377e-1842.41Arginine and glutamate-rich protein 1 OS=Homo sapi... [more]
back to top