TCONS_00062361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062361
Unique NameTCONS_00062361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062361 ID=TCONS_00062361|Name=TCONS_00062361|organism=Clytia hemisphaerica|type=transcript|length=436bp
CAAAGACAGGCTGACTTGGTAGTGAGGGGATACTGAAAAAATGACATCAA
AAATGTCAGAAGAGCATTTAATAGAACGGATAAAATTGTTTATTCGTTAC
ACTCCATACTGTCAAACTTGGTGCTTAGTTTCACGCAGCTTAGAAAGAAG
AAACAAAGGCGTCATCGTTCAACTTGTAAATGATACGTATTGGAGATCAA
GTCTGGATAAAAATCAAACTGATCAACCATCTCATGCCGAAAAATATGTA
CTCAAAGATTTGgaaggaattcttcaaaatgGTGGTGGATGGTCAGGAAA
AGTATCAATTTTAATCAACAACTCCCCTTGTTCAAAAAATACAGTTGATT
ATTCTTCCTGCTTATCAGCTTTGAAACTCTTTGCTCAAAAGTATCCCGAT
ATTGAGGTCAATATCAAGTATTCGAACGACTACTAC
Run BLAST on NCBI

protein sequence of TCONS_00062361-protein

>TCONS_00062361-protein ID=TCONS_00062361-protein|Name=TCONS_00062361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MTSKMSEEHLIERIKLFIRYTPYCQTWCLVSRSLERRNKGVIVQLVNDTY
WRSSLDKNQTDQPSHAEKYVLKDLEGILQNGGGWSGKVSILINNSPCSKN
TVDYSSCLSALKLFAQKYPDIEVNIKYSNDYY
Run BLAST on NCBI

transcript from alignment at scaffold_363:32686..33121

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062361 ID=TCONS_00062361|Name=TCONS_00062361|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at scaffold_363:32686..33121 (Clytia hemisphaerica)
GTAGTAGTCGTTCGAATACTTGATATTGACCTCAATATCGGGATACTTTT
GAGCAAAGAGTTTCAAAGCTGATAAGCAGGAAGAATAATCAACTGTATTT
TTTGAACAAGGGGAGTTGTTGATTAAAATTGATACTTTTCCTGACCATCC
ACCACcattttgaagaattccttcCAAATCTTTGAGTACATATTTTTCGG
CATGAGATGGTTGATCAGTTTGATTTTTATCCAGACTTGATCTCCAATAC
GTATCATTTACAAGTTGAACGATGACGCCTTTGTTTCTTCTTTCTAAGCT
GCGTGAAACTAAGCACCAAGTTTGACAGTATGGAGTGTAACGAATAAACA
ATTTTATCCGTTCTATTAAATGCTCTTCTGACATTTTTGATGTCATTTTT
TCAGTATCCCCTCACTACCAAGTCAGCCTGTCTTTG

Coding sequence (CDS) from alignment at scaffold_363:32686..33121

>TCONS_00062361 ID=TCONS_00062361|Name=TCONS_00062361|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_363:32686..33121 (Clytia hemisphaerica)
GTAGTAGTCGTTCGAATACTTGATATTGACCTCAATATCGGGATACTTTT
GAGCAAAGAGTTTCAAAGCTGATAAGCAGGAAGAATAATCAACTGTATTT
TTTGAACAAGGGGAGTTGTTGATTAAAATTGATACTTTTCCTGACCATCC
ACCACcattttgaagaattccttcCAAATCTTTGAGTACATATTTTTCGG
CATGAGATGGTTGATCAGTTTGATTTTTATCCAGACTTGATCTCCAATAC
GTATCATTTACAAGTTGAACGATGACGCCTTTGTTTCTTCTTTCTAAGCT
GCGTGAAACTAAGCACCAAGTTTGACAGTATGGAGTGTAACGAATAAACA
ATTTTATCCGTTCTATTAAATGCTCTTCTGACATTTTTGATGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039075XLOC_039075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062361-exon-scaffold_363-1491911889:32686..33121TCONS_00062361-exon-scaffold_363-1491911889:32686..33121Clytia hemisphaericaexon
TCONS_00062361-exon-scaffold_363-1510915933:32686..33121TCONS_00062361-exon-scaffold_363-1510915933:32686..33121Clytia hemisphaericaexon
TCONS_00062361-exon-scaffold_363-1575043694:32686..33121TCONS_00062361-exon-scaffold_363-1575043694:32686..33121Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062361-proteinTCONS_00062361-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_363supercontigscaffold_363:32686..33121 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.312579	0	0.176959	0.519381	0	0	0	0	1.05362	1.46821	0.950054	0.936792	4.05379	3.45428	24.849	11.5239	4.81037	9.50018	9.46994	1.21697	1.81332	2.87453	2.86718	4.39877	5.70524	3.29469	13.2869	25.1582	7.28571	4.24171
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013158APOBEC_N
Vocabulary: Molecular Function
TermDefinition
GO:0016814hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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