TCONS_00062367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062367
Unique NameTCONS_00062367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062367 ID=TCONS_00062367|Name=TCONS_00062367|organism=Clytia hemisphaerica|type=transcript|length=555bp
CAGACTTTGAGTACCATTTCATACCACCGACTGCCACTGATACTCCATCG
TCAGTAAGGTGTGATGGTGGATCTGCACCTGATAGGATGATTCCTTTCAG
CTTGAAGCCTCCTTTGGATGTGATAACTTCTAGCTGGTCTGCTCGTTTGC
ATGCTTACTCTGTGTTGATGTCGCCAGAAATACAGTCGTCGACGTACACA
TCCTCCTGAAGAATTCGATTGGCAGCTGGATATTGATCTTTGAAGGTTTC
GGAAACTTGACGCAATCCACGTTCAGCCTGGTTACCGCTGGAACGTATTC
CGTAGATCAGTGTCTTGATTATTTCCTCTCTGGGAATCATTGATGGATCG
AGTTCATCTTACCATATGTAGCGTTGCAACGTCCAATGCGTTGGGTCGAG
CTTAACAGTGTTGTACATTTTACTGACGTCACTGTGTAAACCAATTTCAT
GGATGGACCATCTGATCATCATCTCCTGAAGTTTGTTCAAATTGTTTGTT
CCCTTGGCTAGCAAATCGTTGAGACTGAATCCTGATTGGGTTGGTTGTGA
CGCAT
Run BLAST on NCBI

transcript from alignment at scaffold_363:231774..232328

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062367 ID=TCONS_00062367|Name=TCONS_00062367|organism=Clytia hemisphaerica|type=transcript|length=555bp|location=Sequence derived from alignment at scaffold_363:231774..232328 (Clytia hemisphaerica)
ATGCGTCACAACCAACCCAATCAGGATTCAGTCTCAACGATTTGCTAGCC
AAGGGAACAAACAATTTGAACAAACTTCAGGAGATGATGATCAGATGGTC
CATCCATGAAATTGGTTTACACAGTGACGTCAGTAAAATGTACAACACTG
TTAAGCTCGACCCAACGCATTGGACGTTGCAACGCTACATATGGTAAGAT
GAACTCGATCCATCAATGATTCCCAGAGAGGAAATAATCAAGACACTGAT
CTACGGAATACGTTCCAGCGGTAACCAGGCTGAACGTGGATTGCGTCAAG
TTTCCGAAACCTTCAAAGATCAATATCCAGCTGCCAATCGAATTCTTCAG
GAGGATGTGTACGTCGACGACTGTATTTCTGGCGACATCAACACAGAGTA
AGCATGCAAACGAGCAGACCAGCTAGAAGTTATCACATCCAAAGGAGGCT
TCAAGCTGAAAGGAATCATCCTATCAGGTGCAGATCCACCATCACACCTT
ACTGACGATGGAGTATCAGTGGCAGTCGGTGGTATGAAATGGTACTCAAA
GTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039081XLOC_039081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062367-exon-scaffold_363-1491911889:231774..232328TCONS_00062367-exon-scaffold_363-1491911889:231774..232328Clytia hemisphaericaexon
TCONS_00062367-exon-scaffold_363-1510915933:231774..232328TCONS_00062367-exon-scaffold_363-1510915933:231774..232328Clytia hemisphaericaexon
TCONS_00062367-exon-scaffold_363-1575043694:231774..232328TCONS_00062367-exon-scaffold_363-1575043694:231774..232328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_363supercontigscaffold_363:231774..232328 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.664308	0.396974	0.428772	0.0866427	0.955376	1.24769	0.859726	1.04484	0.259217	0.946031	0.813897	1.54449	0.136388	0.14164	0	0.212318	0.300827	0.118112	0	0.342179	0.0991384	0	0	0	0.135805	0.098252	0.363444	0.314819	0.113808	0.231904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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