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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062406 ID=TCONS_00062406|Name=TCONS_00062406|organism=Clytia hemisphaerica|type=transcript|length=893bp AATTATCTAGTAATTAATATAAAAACTAGGAGTTGTCAGTAGAAATCATT CATTCACATCTGAATACTGTAAGCAAGAGAGATGTTGAATGATGAAGTGA TATAGTTCACAAACGTTTTGATATTTTTCCACACTTGTTGAATGAGACTG CTGACGCCTTCTAGCCCCAAAACATTGTCAATTTACCTATCGTTTCAATA TACCGTTTTATCGGAGCGATTGAGTCCATTTCCTGATTTCCTGAGATAAG TTTCTTCGGCATCAACAGTTGAAAATCAGAATCATTTCCATATCAAGACA GCTTAAGAGACGCAACAATGGCTTTTGGAAACAGTTCTACGCTAAACATG ACGACATTAAACAACACTGCAGAAAATCCTGTATTCGAATGTTTCAAGCT ACCCATTACAGTTGGTAATGATACGTTTTGTGGTAATTTAACAAAATGGG AATCGAGATATAGCGAGGATGGTTTGAAAGCTATGGTAATAGTGCCAGCA ATTGTAGCTTTGCTTGTCCTCTTCTTCAGATTGTGGCGAAGTAAATTTGC TGTTCGAGAAAATTATGAAATCATTATGGAGTATGAAAGGCGTCTATTTA AATTTCGGAAGAATCATAAACTTGAAAGAACTGATTCTATGATTAGCCAA GAATTTGAGATGTATAGAGTTGAATTTGATATCAAAGACGAGAGCGAGAA TGAAGATAAAATCAAATTGAATTGTATTGTGAGATGTTTCCAAGGAGTTG GTCGGTGTTTGAAAGTGGAAGATTTAGGGTGGAAATTCATATCACTCAAA ACCTTCGTAACAATCAAATTTCTAACATATGTTAAACAGGCATTGGAAGT TCTGGATGTGATCCTGGATTGCTTCTTGCTTTACCAATTAGAN Run BLAST on NCBI protein sequence of TCONS_00062406-protein >TCONS_00062406-protein ID=TCONS_00062406-protein|Name=TCONS_00062406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MAFGNSSTLNMTTLNNTAENPVFECFKLPITVGNDTFCGNLTKWESRYSE DGLKAMVIVPAIVALLVLFFRLWRSKFAVRENYEIIMEYERRLFKFRKNH KLERTDSMISQEFEMYRVEFDIKDESENEDKIKLNCIVRCFQGVGRCLKV EDLGWKFISLKTFVTIKFLTYVKQALEVLDVILDCFLLYQLX Run BLAST on NCBI transcript from alignment at scaffold_364:142804..150892- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062406 ID=TCONS_00062406|Name=TCONS_00062406|organism=Clytia hemisphaerica|type=transcript|length=8089bp|location=Sequence derived from alignment at scaffold_364:142804..150892- (Clytia hemisphaerica) AATTATCTAGTAATTAATATAAAAACTAGGAGTTGTCAGTAGAAATCATT
CATTCACATCTGAATACTGTAAGCAAGAGAGATGTTGAATGATGAAGTGA
TATAGTTCACAAACGTTTTGATATTTTTCCACACTTGTTGAATGAGACTG
CTGACGCCTTCTAGCCCCAAAACATTGTCAATTTAGTGAGTATTATTTAT
CTATGTAGCATTAGTATGTTAGATTTCAGTTTAGTTCATTTGTTTTTCTG
AGTGCCTTTTTTCTGTTCTACAGTACCTGGATTAGAGATTTTCTATAGTT
TTGTACATTTTTCTAAAGTAGTTTTGTATTTTTTGTTCTAGCCTATCGTT
TCAATATACCGTTTTATCGGAGCGATTGAGTCCATTTCCTGATTTCCTGA
GATAAGTTTCTTCGGAATCAACAGTTGAGAATCAGAATTATTTCCATATC
AAGACAGCTTAAGAAACGCAACAATGGCTTTTGGAAACAGTTCTACATTA
AACATGACGACATTAAACAACACTACAGAAAATCCTGCATTCGAATGTTT
CAAGCTACCCATTACAGTTGGGAATGATACGTTTTGTGGTAATTTAACAA
GATGGGAATCGAGATATAGTGAGGATGGTTTGAAAGCTATGGTAATAGTG
CCAGCAATTGTAGCTTTGCTTGTCCTCTTCTTCAGATTGTGGCGAAGTAA
ATTTGCTGTCCGAGAAAATCATGAAATCATGATGGAGTATGAAAGACGTT
TATTCAAATTTAGGAAGAATCATAAACTTGAAAGAACTGATTCAATGATC
AGCAAAGAATTTGAGATGTATCGAGTTGAATTTGATATCAAAGACGAGAG
CGAGAATGGAGATAAAGATAAAATCAAATTGAATTGTATTGTGAGATGTT
TCCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGAGGATGGAG
GAAAGATATTCCAAAGTCCTTTTGATTCAGGCTGTATGAGAGGAATAGAT
TACCTTGTGGTGATTCTAACATTCACGCCTTTGGCAACAATTCAAATTGT
TTACGCTGTCATACATGTTTGGTTTCGGTTGAACCCTCGTTCTTCTACAC
TGGAGAAATATTTCTTCTGAAAACTAATTACCATAAACATCGATACAGTT
AGATTGTGTGATGGATGGACTATTTCAATTTTTTGCTTCGTTTTTTACTT
CGCTTTTGTAAGATTTATGTATAAACAATTAATTCTTTTGTTATTTTAAA
ACTTTTGGTTTAAATTGTGACACTTTAATCTTAACTCTGTTTTAGGCCTC
ATAACTTCAAAAATTATAAATATAAATATTTTCGAGTAAAACTTTTTTTC
ATGAATTAAATAAAAGGTATTGAAAAACCGTCTTTTGTTTGTCTTCACGT
TTTTTTTATAAGAACAATTCAGTAAGAGCAAATTTTGAATGCTGGTCATG
TTCTAGAAACATCTGACATGATCACTAAATCACTAAAAATTTTCAAGAAT
GATATCTGGCAGGGTCGGAAAATCGCAAAAAAATCTATGGACCGTTCGTA
GAAAAACTATTTTTCAAACCCGTTCTCATGGCTACTAAAAATAAAGATGG
AGATTCATAGAAAACCCAATCAGGAGGTTCAAATACGATGAGTGTTTGTA
TGCAAACAATAAATTCCTAGAATTGTGGTCACTAAGTAACACGTGCTTTT
TTATACATACCAGTACTTTTGGCATCCATGTCCTCTTCTTCAGATTGTGG
CGAAGTAAATTTGCTGTCCGAGAAAATCATGAAATCATGATGGAGTATGA
AAGACGTTTATTCAAATTTAGGAAGAATCATAAACTTGAAAGAACTGATT
CAATGATCAGCAAAGAATTTGAGATGTATCGAGTTGAATTTGATATCAAA
GACGAGAGCGAGAATGGAGATAAAGATAAAATCAAATTGAATTGTATTGT
GAGATGTTTCCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGAGG
ATGGAGGAAAGATATTCCAAAGTCCTTTTGATTCAGGCTGTATGAGAGGA
ATAGATTACCTTGTGGTGATTCTAACATTCACGCCTTTGGCAACAATTCA
AATTGTTTACGCTGTCATACATGTTTGGTTTCGGTTGAACCCTCGTTCTT
CTACACTGGAGAAATATTTCTTCTGAAAACTAATTACCATGAACACCGAT
ACAGTTTGATAGTGTGTTGGATGGACTAATTCAATTTTTTGCTTCGTTTT
TTGCTTCGTTTTTGTAAGATTTATGTATAAATAATTAATTCTTTTGTTAT
TTTAAAACTTTTGGTTTAAATTGTGACACTTTAATCTTAGCTCTGTTTTA
GCCTCATAACTTCAAAAATTATAAATATAAACATTTTCGAGTAAAATTTT
TTTTCATGAATTAAATAAAATGTATTGAAACACTGTCTTTTGTTTGTCTT
CACGTTTTTTTATAAGAACAATTCGGTAAGAGCAAATTTTGAATGCTGGT
CATGTTCTAGAAACATCTGACATGATCGAACTAAATCACTAAAAATTTTC
AAGAATGATATCTGGCAGGGTCGGAAATTCGCAAAAAAATCGGTGAAATT
CATACCGTTACAGTGCATTTTTCTCGAACTTTCAAACCTTTAAGAGAAAA
AAATCAGCGATTCTAAAAATCAAGCATTTCAAGAACATTTTAGCAATAAT
CATTGAGGCGAAAATTGTCAAAAAAGGAGCCATCTATGGACCGTTCGTAG
AAAAACTATTTTTCAAGTCCGTTCTCGTGGCTACTAAAAATAAAGATGGA
GATTCATAGAAAACCCAATCAGGAGGTTCAAATACTTTGTATGCAAATAA
TAAATTCCTAGAATTGTGGTCGCTAAGTAACACGTGTTTTTTTATACTAA
CTAGTAATTTTGGTTCCATCTTTGGACGTTTCAGTATTATGTTTTCAAAA
TTTTAAACTTAAATTTAATAATTTGAAAGTGTAGGAAAATGTGTATGAGG
CTTTTGGTTAAAAATCAAAGAATTGTTCTACTAGGCCAAAAAATTTTTCA
TCATACCTTTCTGAAACTTTGAACCCTGCTGATTTCAAACATGTATTCAG
ACTTTTCCTACCTTTTTGGTCAAAGTTAATTTCGACAATTTTTAACAATT
TATCTCGGAGCTTTGTAACTTTTGATCCAAAAATTGAAAATTATCCTTCA
AACGAGGTATTAATTTTCTTTCCTCAAAAGAGGAACAACTTTTAGAACAG
AATTTAGCACTACTTTGAAGAACGAAAGAAAAGAACATGAAAATAAAGTT
CTTATAAAAACATCATTCCAATGATAGAGTGCGTTTACAGTGTTGGATTT
TAAAACAAGAAAAAGTCAAGCTTTAAATTTCACTCATGTCCAGTACTGAG
GAAAATTTGCGCTGGTCTCCGGCGAAAGACCTTCGCAAATGATTTACATC
ATTATCTCCCTAATATACCATTTTCGACTAAAGTTTCCAGGATAATGTGG
TGGTCCAATTTTAGTAGCCATTCCCGGGAGTAATATAGTGGTCCAATATC
ATCAGTTTTTCTCCGGCGAAACGCAGTGGTCAAAACGTGAATAGATAATA
GATATCGTGCGTCCAGGATAAGTAATTTATCTCCGGGGAAATTCGGTGGT
CCAAAATCAGTCCATGGTCTGATTTTTGATCAACGAATTTTCCTAGAAAC
TAATTACTTATTTTGGACGCCCGAGCCAAGGTCAACTAAAATTTGGTGTT
ATCTTCATTATCTCCTTCCAATTTGATCAGCGCATTTTCCCGGAGATTTA
TGTACTGATTTTGAACCAACGAATTTCCCCAGAGGGTAATTACTTATTTT
GGACTCCCGAGCAACGGTAAACCAAAATCTGCTGTGTCTGTGTGTGTATG
TGTGTCTCTAATGTTTTGCATATTTATTTCGTGTTTTTATTAAGGAGAAT
AGACTTATGGAAAGAATATTCATACTGTAATTTTTTGAAATTTATCTCCC
TAATATTTTTTCAAAATCGATTTCCAATATTTAGGAGATAAATTCTGTCA
AACTCAAAGTACAATTCTGGTTTTGCCGGTGTACTGGACATAGCTCTTAA
ATCTTAGCCGCTGTTGGATGACGGATTGTATCTAGCGTTTTCTTTGTTTT
TACCCGGCGTTAGATTTTATTTGCAATCTGGCGTTTGTGTGAAAACCACG
CTGGTCACACGTTTTAAATTGGAAATAAGTTGTTTTATCTCCCATCCGAG
AGTTTTCTTTCTAGCCCCTTCGGGAGTTCAAAATCGATGGTTTACACATC
CCGGCATTTGGCATATCGTAATTGGTTGCAAGGGAATAGTTTTGATAGTG
TTTCTTTTGTTTGGCACAGGTTTTCGTACACGCAACCATTTTCCCTTAAT
CCAGCATTTCAGAGACAAAATTCTGTCAGGTCACTTGAGACAAAAGAAAT
TTCTCAATAAAGATGTTGCCATCTATGCACCATTAGACTATGTTATAGTC
TAAGACAAATCACTATCTAAGAAATATGCCCAAAGCTGAAGAAAATTCGC
AAACGGGTTTTTTTGCCGAAAAGAGTTTACAGTCGGCAGAGGTTACCAGT
CTTAAGGGCTCTGACCATAGTCGGAAAATTGATTTTAGTATTTGAACATA
AAAGTTATGTTTTAAAGTCTGTCTCGAAATAATTTGCAGCTGGAGAAAAA
AATGGCTGTAACTTTTGATAGAATTCGAATCAAGTTGCGATTTTGTGCTC
GTTAAAAAGATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAAATTGAGAAAAAAAAGGAAAATGAAAATGAAAAATGAAG
AAGAAAAAAATCAACTTTTTGTAGAAATGTGGTATAATTACCATTTTCAC
AGGAGTGATTTTCAATCTTAGATCATCATCACTGTCAAAACAATTTTCAA
AAATATTCATTCAATCAAAAGATATCAAAGAAAGTTTATTGCTGGTTGAC
TCTATAAAATAGTAAAAACTGGTAAAAAACGACAAAAAACAGCCTTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATTAGATTTCAGTTTAGTTCATTTGTTTTTCTGAGTGCCTTTT
TTCTGTTCTACAGTACCTGGATTAGAGATTTTCTATAGTTTTGTACATTT
TTCTAAAGCAGTTTTGTATTTTTTGTTCTAGCCTATCGTTTCAATATACC
GTTTTATCGGAGCGATTGAGTCCATTTCCTGATTTCCTGAGATAAGTTTC
TTCGGCATCAACAGTTGAAAATCAGAATCATTTCCATATCAAGACAGCTT
AAGAGACGCAACAATGGCTTTTGGAAACAGTTCTACGCTAAACATGACGA
CATTAAACAACACTGCAGAAAATCCTGTATTCGAATGTTTCAAGCTACCC
ATTACAGTTGGTAATGATACGTTTTGTGGTAATTTAACAAAATGGGAATC
GAGATATAGCGAGGATGGTTTGAAAGCTATGGTAATAGTGCCAGCAATTG
TAGCTTTGCTTGTCCTCTTCTTCAGATTGTGGCGAAGTAAATTTGCTGTT
CGAGAAAATTATGAAATCATTATGGAGTATGAAAGGCGTCTATTTAAATT
TCGGAAGAATCATAAACTTGAAAGAACTGATTCTATGATTAGCCAAGAAT
TTGAGATGTATAGAGTTGAATTTGATATCAAAGACGAGAGCGAGAATGAA
GATAAAATCAAATTGAATTGTATTGTGAGATGTTTCCAAGGAGTTGGTCG
GTGTTTGAAAGTGGAAGATTTAGGGTGGAAATTCATATCACTCAAAACCT
TCGTAACAATCAAATTTCTAACATATGTTAAACAGGCATTGGAAGTTCTG
GATGTGATCCTGGATTGCTTCTTGCTTTACCAATTAGAN Coding sequence (CDS) from alignment at scaffold_364:142804..150892- >TCONS_00062406 ID=TCONS_00062406|Name=TCONS_00062406|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_364:142804..150892- (Clytia hemisphaerica) ATGGCTTTTGGAAACAGTTCTACGCTAAACATGACGACATTAAACAACAC TGCAGAAAATCCTGTATTCGAATGTTTCAAGCTACCCATTACAGTTGGTA ATGATACGTTTTGTGGTAATTTAACAAAATGGGAATCGAGATATAGCGAG GATGGTTTGAAAGCTATGGTAATAGTGCCAGCAATTGTAGCTTTGCTTGT CCTCTTCTTCAGATTGTGGCGAAGTAAATTTGCTGTTCGAGAAAATTATG AAATCATTATGGAGTATGAAAGGCGTCTATTTAAATTTCGGAAGAATCAT AAACTTGAAAGAACTGATTCTATGATTAGCCAAGAATTTGAGATGTATAG AGTTGAATTTGATATCAAAGACGAGAGCGAGAATGAAGATAAAATCAAAT TGAATTGTATTGTGAGATGTTTCCAAGGAGTTGGTCGGTGTTTGAAAGTG GAAGATTTAGGGTGGAAATTCATATCACTCAAAACCTTCGTAACAATCAA ATTTCTAACATATGTTAAACAGGCATTGGAAGTTCTGGATGTGATCCTGG ATTGCTTCTTGCTTTACCAATTAGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062406-exon-scaffold_364-1575043694:150708..150892 | TCONS_00062406-exon-scaffold_364-1575043694:150708..150892 | Clytia hemisphaerica | exon |
TCONS_00062406-exon-scaffold_364-1575043694:142804..143511 | TCONS_00062406-exon-scaffold_364-1575043694:142804..143511 | Clytia hemisphaerica | exon |
TCONS_00062406-exon-scaffold_364-1510915933:150708..150892 | TCONS_00062406-exon-scaffold_364-1510915933:150708..150892 | Clytia hemisphaerica | exon |
TCONS_00062406-exon-scaffold_364-1510915933:142804..143511 | TCONS_00062406-exon-scaffold_364-1510915933:142804..143511 | Clytia hemisphaerica | exon |
TCONS_00062406-exon-scaffold_364-1491911889:150708..150892 | TCONS_00062406-exon-scaffold_364-1491911889:150708..150892 | Clytia hemisphaerica | exon |
TCONS_00062406-exon-scaffold_364-1491911889:142804..143511 | TCONS_00062406-exon-scaffold_364-1491911889:142804..143511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_364 | supercontig | scaffold_364:142804..150892 - |
Blast
The following BLAST results are available for this feature:
|