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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062430 ID=TCONS_00062430|Name=TCONS_00062430|organism=Clytia hemisphaerica|type=transcript|length=1694bp
CTGTCAGCAAAAATGAAAAGCTCGATCTTGAGTATCAGAAGATGAAGCTC
AAATACCGAGAAGTCAAACTGTCCGAGAAAGAAACATCTCAGAAATTGAC
GGACGTTAAAAACGAGAATAAGAAGTTATTGAAGAAGTATGAAGATCTGA
AAAACAAGAATGTTTCACTTTCGGCAGAAGATAAGGAAACATTGCGTTTG
ACCAGACGAGAGAATTTggatttgaaatcaaaacacGCCATCCAGGAGCA
GACACTTCGCCACCAGATTCAGAAGCTTAAAGAGGGAAATAAGAAGCTGG
GAAAGAAAAACGTGAAGTTGGAACGCAAGTTGAGAGATTCTCGTATGAAG
TTAACTTCTTCGGATgaagaaaatggaaaatatcGATCGCTGGAAAAAGA
GATCAAGAAATTGAGAGAAGAACGATCGGATTCTCAAAGTGAAATCGAAA
ATCTGCGCAAAGAgaagaaacaaatgaaaaaggaaatgaatgaaaaagaa
cTCGAAACGGAAGAAGTTGTGAGATCCATGCAAAAGAGAATCGACCAACT
CACCAAAGAGCTGGAAGAACAAAATGCCAATAATCGTTTCATCTCCACCA
CAGTAGAAACAAAGAAGAAAGCAAAAGATCCGGCAGCCGAAGAATATTCT
TACGAAGATGACTTTGAAGAAGAATCAATCGCTTCGTCAGTTTGTGAAAG
TGAAAAGGGAGAGCCATCTTTTGTGGAAGAAGTCGCTTCTATTTCTTCTC
CTTCTGTTGCTACTAGCAACAAGTATGATGACGACACGTTCGAAGATGCT
AGCTTTGCTGAAAGCGACAAATTGGACGCTGACCAAGGTGAAATTTGTGA
AGAATCCGTCGCTGAAATCGAATCCGATGATGAGTCCCGAAAATCCGATG
ATGAATCCCGAAAATCCGATCTCTTTTTCGGGGATAAGAACAACAgcaaa
tttggaaacattagcTTTGGAGTTCCGCAAGTTTCAAATGTTGAGGAAGT
GATTATCAAAACACCCGTTGCACAAACTAAAACACCCGTTGCTCGATTTG
AAGCGCCTGTTGCGCGATTTGAATCTCCTGTTGTTGTTAATGAAATTGTC
ATCGAGGATGTTCCAACACTTAGAGCAGAGTCACCTCCAAATATGCTGGC
AAAGACACCTTCTTCCTTGCTTTTCAACCAAGTCTTGACTTCATCGAGTG
ATGCACCATCAAATgctagcaaaaaaaacaaatccgGCAAATCCTCAAAA
GCAAAACCAAAAACTTCTGACCAGATGAGCGCAGCCGATATCTTCGGTAC
TGAGAAACCGAAAAAATCTGCAAAGAAGAAAAGCTTTGTTGGTGAATCGA
TCTCAGCTGCCGATATCTTTGGATCTGCACCCTCATTGAAGCCAAAGAAA
GGcaagaaaaacaagaaagttACCAAGAAGAGCAACAATCTCTCTGCTAC
TGATATCTTTGGCGCTCCACCATCAGCCAAATTGAACAGGAAACAAAGCA
AAGAAATGAACCGAGATATCCATTCTATTCTCGGAGACCTGTAAGAGTAG
CATCGAGAGAGATACACGAGCGAGTCCTAGTTTGCTGAGAGAGATCTTAA
TCTTGAAAAGTTGTTAGTTATAAGACTTTTGTAAATAATTGTTATAGCTC
cgtcaaaatataaaaaaattcaccatcattaatatttatgtttt Run BLAST on NCBI transcript from alignment at scaffold_364:298625..301779- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062430 ID=TCONS_00062430|Name=TCONS_00062430|organism=Clytia hemisphaerica|type=transcript|length=3155bp|location=Sequence derived from alignment at scaffold_364:298625..301779- (Clytia hemisphaerica)
CTGTCAGCAAAAATGAAAAGCTCGATCTTGAGTATCAGAAGATGAAGCTC
AAATACCGAGAAGTCAAACTGTCCGAGAAAGAAACATCTCAGAAATTGAC
GGACGTTAAAAACGAGAATAAGAAGTTATTGAAGAAGTATGAAGATCTGA
AAAACAAGAATGTTTCACTTTCGGCAGAAGATAAGGAAACATTGCGTTTG
ACCAGACGAGAGAATTTGGATTTGAAATCAAAACACGCCATCCAGGAGCA
GACACTTCGCCACCAGATTCAGAAGCTTAAAGAGGGAAATAAGAAGCTGG
GAAAGAAAAACGTGAAGTTGGAACGCAAGTTGAGAGATTCTCGTATGAAG
TTAACTTCTTCGGATGAAGAAAATGGAAAATATCGATCGCTGGAAAAAGA
GATCAAGGTTAGAATGAATTTTTGTTCATCAATGTCGATTTTTTGTGGAA
ACACTATGAACTGTCTGATCGGTGGTCTGTTATCTTTCTGTGTTGAGGCG
ATGTTGATGATATCATCTTCCCTGCATCCATTAGCCATTTCTTTCACACG
TAAAAAAAATCTCAAACTGTTCTTTTCGAAGTATCCACCTTGTATGTATG
TATGTAATAGTTTATTTCAAGTTGACGAACAGGTAGCAACAAAGGCTAAT
AAAAGTCAACGCTACTTTACAATTTGTAAGGTGATTACAAAAGGCCGACA
CCGATTTTAAAAGCAGTTACTGCGATAAAAATGTTTTTATCGCACTAACT
GCTTTTAAGGTGGATACTTCGAAAAGAACAGTTTGAGATTTGATGAGAAT
CAAGAACTTTCCTTGCTAGGTGTCAGACTATAAACGTGTTGAAAGTATTA
CTTGTTAAATGCTAAATTTTGCCAAATATTGTATGAAGCTTATTATTTTT
TCGCTTTTCAGAAATTGAGAGAAGAACGATCGGATTCTCAAAGTGAAATC
GAAAATCTGCGCAAAGAGAAGAAACAAATGAAAAAGGAAATGAATGAAAA
AGAACTCGAAACGGAAGAAGTTGTGAGATCCATGCAAAAGAGAATCGACC
AACTCACCAAAGAGCTGGAAGAACAAAATGCCAATAATCGTTTCATCTCC
ACCACAGTAGAAACAAAGAAGAAAGCAAAAGATCCGGCAGCCGAAGAATA
TTCTTACGAAGATGACTTTGAAGAAGAATCAATCGCTTCGTCAGTTTGTG
AAAGTGAAAAGGGAGAGCCATCTTTTGTGGAAGAAGTCGCTTCTATTTCT
TCTCCTTCTGTTGCTACTAGCAACAAGTATGATGACGACACGTTCGAAGA
TGCTAGCTTTGCTGAAAGCGACAAATGTAAGTCGTCGATGAAAGGCTTGA
TCTTTTTTTTTCCAGGAATTAATTGTTGATTTTTCAGTAGAAAGTAAATT
GATTTTCGAAATTTTTGGACGATTCTAAACCTGACCAGGTAAATGATACA
GGGATGTTTTAAAACCTTCGATGTATCAAAATGTGCGAGCTGCTAGTGTA
GTTTTGCTCTACATTATTTTCTTCGTTTACACGCTTTTTTTATAAGAATA
TATTTTATAAGAATGTCCATGATAAAAATGGCCAAAAAATTAAGAATATG
CCACGAATATCACCATCATGGAATTTGGCTACTCAAGCTAAGAATGCAAT
TGGGCTTTTCCAGAAATAGTTCGCCCCCCCCCCTGAGTTGAGGATATCAA
AACATTTTTCTTTGATCTTTGATCTGAAAGAATGAGATTATGCAAGAAAG
AATAAACCTTTGTATCCCCAACATGTTAAATTAACGGGGGAGTTCACTAA
ATCAAAGTGGAAGCATTTCTGACGAACCTTAGTTTCTTTCCCCAAAGAAT
AAGTAGTTACACGCTTGTTTTATAAGAATACACTTTATAAGAATTTCCAT
GATGAAAATGGCCAAAAAATTAAGAATAACGCTAAGAATATCACCATCAT
GGAACTTTGCTACTCAAGCTAAGAATACCATTTTTAGAGCATTTCCAATT
ATAAATTGTAAATTACCCCAAGTAAGGCTCACTCCTTTCATGAAAATACC
ATTTTATACTTGAGACGTATGTTCTAAATGTTAAATCTAGTCTGAATTTT
AGGATCTTAACTTAAGAATGCTGTAAGAATACTTTAGGACGATTTTCCCA
AAAAGTTAAGAATATCCATGATGAAAAAACAAAAGCGTGTACATTAAGAA
CCCTTTATTTCTCAGTCTACACCATTTTGTAATTTTATTGCTTTAGTGCT
GTTTTTTCATTTGTTGCTTTCTTTTCGTTTCAGTGGACGCTGACCAAGGT
GAAATTTGTGAAGAATCCGTCGCTGAAATCGAATCCGATGATGAGTCCCG
AAAATCCGATGATGAATCCCGAAAATCCGATCTCTTTTTCGGGGATAAGA
ACAACAGCAAATTTGGAAACATTAGCTTTGGAGTTCCGCAAGTTTCAAAT
GTTGAGGAAGTGATTATCAAAACACCCGTTGCACAAACTAAAACACCCGT
TGCTCGATTTGAAGCGCCTGTTGCGCGATTTGAATCTCCTGTTGTTGTTA
ATGAAATTGTCATCGAGGATGTTCCAACACTTAGAGCAGAGTCACCTCCA
AATATGCTGGCAAAGACACCTTCTTCCTTGCTTTTCAACCAAGTCTTGAC
TTCATCGAGTGATGCACCATCAAATGCTAGCAAAAAAAACAAATCCGGCA
AATCCTCAAAAGCAAAACCAAAAACTTCTGACCAGATGAGCGCAGCCGAT
ATCTTCGGTACTGAGAAACCGAAAAAATCTGCAAAGAAGAAAAGCTTTGT
TGGTGAATCGATCTCAGCTGCCGATATCTTTGGATCTGCACCCTCATTGA
AGCCAAAGAAAGGCAAGAAAAACAAGAAAGTTACCAAGAAGAGCAACAAT
CTCTCTGCTACTGATATCTTTGGCGCTCCACCATCAGCCAAATTGAACAG
GAAACAAAGCAAAGAAATGAACCGAGATATCCATTCTATTCTCGGAGACC
TGTAAGAGTAGCATCGAGAGAGATACACGAGCGAGTCCTAGTTTGCTGAG
AGAGATCTTAATCTTGAAAAGTTGTTAGTTATAAGACTTTTGTAAATAAT
TGTTATAGCTCCGTCAAAATATAAAAAAATTCACCATCATTAATATTTAT
GTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062430-exon-scaffold_364-1575043694:301373..301779 | TCONS_00062430-exon-scaffold_364-1575043694:301373..301779 | Clytia hemisphaerica | exon |
| TCONS_00062430-exon-scaffold_364-1575043694:300454..300868 | TCONS_00062430-exon-scaffold_364-1575043694:300454..300868 | Clytia hemisphaerica | exon |
| TCONS_00062430-exon-scaffold_364-1575043694:298625..299496 | TCONS_00062430-exon-scaffold_364-1575043694:298625..299496 | Clytia hemisphaerica | exon |
| TCONS_00062430-exon-scaffold_364-1510915933:301373..301779 | TCONS_00062430-exon-scaffold_364-1510915933:301373..301779 | Clytia hemisphaerica | exon |
| TCONS_00062430-exon-scaffold_364-1510915933:300454..300868 | TCONS_00062430-exon-scaffold_364-1510915933:300454..300868 | Clytia hemisphaerica | exon |
| TCONS_00062430-exon-scaffold_364-1510915933:298625..299496 | TCONS_00062430-exon-scaffold_364-1510915933:298625..299496 | Clytia hemisphaerica | exon |
| TCONS_00062430-exon-scaffold_364-1491911889:301373..301779 | TCONS_00062430-exon-scaffold_364-1491911889:301373..301779 | Clytia hemisphaerica | exon |
| TCONS_00062430-exon-scaffold_364-1491911889:300454..300868 | TCONS_00062430-exon-scaffold_364-1491911889:300454..300868 | Clytia hemisphaerica | exon |
| TCONS_00062430-exon-scaffold_364-1491911889:298625..299496 | TCONS_00062430-exon-scaffold_364-1491911889:298625..299496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:298625..301779 - |
Blast
The following BLAST results are available for this feature:
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