TCONS_00062447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062447
Unique NameTCONS_00062447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062447 ID=TCONS_00062447|Name=TCONS_00062447|organism=Clytia hemisphaerica|type=transcript|length=641bp
ttatttttgaaaaaatctgttATCTTTCGATTTGGTTtctttttatcatg
ttttggAAAAGAATCTTGTTTGCGCTTGCGGGGTGAACTACCAGGAGTAT
GAGAGGTATTTCCATTGCTTAAAGCATCAAATCCTGGTAAAATGTTGTAG
CCAAGTGGTGTAACAGGGGTGCAAatctctttctcttcttttataATACA
ATCAGATACTGGTGATTTTCTTGTAGCGTTGGCGTCTTTCTCAGGTTGGT
CTTTCTTTTGCAATGTTGAATTTGCTACTCCAAAACTAGGAGGGGCTTTG
TTTTCAGATCTGACAAGCAggggtttttctttttcttttggagCAGTGTA
GAAGACATTAGTAAAGAACACTTTGGCCTTTCTGGTTATCTTAAATTTAC
TCTTTTCCTCTTCAGTAGCAGCTTTGCGTCGAACTGTCCAACCTTTGAAC
CTTGATACGTGTCTATTGAAAGATTTCATGCAGGACTGTGTTAGATGACA
ATCTGGATTAAGCAATTTAATCTTAATACGAGCTCCAGGTTCCATTTCTC
TGGCTTCTGTTGTGATGCGCACTTCGTTAAATTTTCTGATAGCTTCTTCT
TCTCTTTGTAATGCTGCTTTTGACTTGTCTGCCCAGTCACT
Run BLAST on NCBI

protein sequence of TCONS_00062447-protein

>TCONS_00062447-protein ID=TCONS_00062447-protein|Name=TCONS_00062447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
SDWADKSKAALQREEEAIRKFNEVRITTEAREMEPGARIKIKLLNPDCHL
TQSCMKSFNRHVSRFKGWTVRRKAATEEEKSKFKITRKAKVFFTNVFYTA
PKEKEKPLLVRSENKAPPSFGVANSTLQKKDQPEKDANATRKSPVSDCII
KEEKEICTPVTPLGYNILPGFDALSNGNTSHTPGSSPRKRKQDSFPKHDK
KKPNRKITDFFKN
Run BLAST on NCBI

transcript from alignment at scaffold_364:79127..79767

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062447 ID=TCONS_00062447|Name=TCONS_00062447|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at scaffold_364:79127..79767 (Clytia hemisphaerica)
AGTGACTGGGCAGACAAGTCAAAAGCAGCATTACAAAGAGAAGAAGAAGC
TATCAGAAAATTTAACGAAGTGCGCATCACAACAGAAGCCAGAGAAATGG
AACCTGGAGCTCGTATTAAGATTAAATTGCTTAATCCAGATTGTCATCTA
ACACAGTCCTGCATGAAATCTTTCAATAGACACGTATCAAGGTTCAAAGG
TTGGACAGTTCGACGCAAAGCTGCTACTGAAGAGGAAAAGAGTAAATTTA
AGATAACCAGAAAGGCCAAAGTGTTCTTTACTAATGTCTTCTACACTGct
ccaaaagaaaaagaaaaaccccTGCTTGTCAGATCTGAAAACAAAGCCCC
TCCTAGTTTTGGAGTAGCAAATTCAACATTGCAAAAGAAAGACCAACCTG
AGAAAGACGCCAACGCTACAAGAAAATCACCAGTATCTGATTGTATtata
aaagaagagaaagagatTTGCACCCCTGTTACACCACTTGGCTACAACAT
TTTACCAGGATTTGATGCTTTAAGCAATGGAAATACCTCTCATACTCCTG
GTAGTTCACCCCGCAAGCGCAAACAAGATTCTTTTccaaaacatgataaa
aagaAACCAAATCGAAAGATaacagattttttcaaaaataa

Coding sequence (CDS) from alignment at scaffold_364:79127..79767

>TCONS_00062447 ID=TCONS_00062447|Name=TCONS_00062447|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_364:79127..79767 (Clytia hemisphaerica)
AGTGACTGGGCAGACAAGTCAAAAGCAGCATTACAAAGAGAAGAAGAAGC
TATCAGAAAATTTAACGAAGTGCGCATCACAACAGAAGCCAGAGAAATGG
AACCTGGAGCTCGTATTAAGATTAAATTGCTTAATCCAGATTGTCATCTA
ACACAGTCCTGCATGAAATCTTTCAATAGACACGTATCAAGGTTCAAAGG
TTGGACAGTTCGACGCAAAGCTGCTACTGAAGAGGAAAAGAGTAAATTTA
AGATAACCAGAAAGGCCAAAGTGTTCTTTACTAATGTCTTCTACACTGct
ccaaaagaaaaagaaaaaccccTGCTTGTCAGATCTGAAAACAAAGCCCC
TCCTAGTTTTGGAGTAGCAAATTCAACATTGCAAAAGAAAGACCAACCTG
AGAAAGACGCCAACGCTACAAGAAAATCACCAGTATCTGATTGTATtata
aaagaagagaaagagatTTGCACCCCTGTTACACCACTTGGCTACAACAT
TTTACCAGGATTTGATGCTTTAAGCAATGGAAATACCTCTCATACTCCTG
GTAGTTCACCCCGCAAGCGCAAACAAGATTCTTTTccaaaacatgataaa
aagaAACCAAATCGAAAGATaacagattttttcaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039114XLOC_039114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062447-exon-scaffold_364-1491911889:79127..79767TCONS_00062447-exon-scaffold_364-1491911889:79127..79767Clytia hemisphaericaexon
TCONS_00062447-exon-scaffold_364-1510915933:79127..79767TCONS_00062447-exon-scaffold_364-1510915933:79127..79767Clytia hemisphaericaexon
TCONS_00062447-exon-scaffold_364-1575043694:79127..79767TCONS_00062447-exon-scaffold_364-1575043694:79127..79767Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062447-proteinTCONS_00062447-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:79127..79767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.2651	38.04	52.5368	55.9476	3.87623	3.15056	9.71372	9.98348	12.526	7.2863	8.07069	10.0091	7.48272	9.64269	8.4872	9.30824	16.9539	13.1435	0.3492	0.365413	12.228	8.7142	29.7553	26.7094	34.0349	38.7168	2.81522	3.72556	17.6834	20.2455
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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