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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062460 ID=TCONS_00062460|Name=TCONS_00062460|organism=Clytia hemisphaerica|type=transcript|length=1486bp
TATAAACTCACGTCATACAAGGTTGGTATATTAAAGAGATAACAAAGAAA
TGGATAACTAAACTAAAGAGATAAATAATCATAAGATNTTAAAGAGATAA
CAAAGAAATGGATAACTAAACTAAAGAGATAAATAATCATAAGATTTGGA
TATCTCAATtcatacaaaagaaaaacatcctCCAAACTTTGGTTCATTCT
AAAACTGACCGCTGCTGAAGAAACATCATTAGAAATTACgtgcaccaaca
ttgagttaCCGCTACTGAAAAAGCTACGGGAAAAAGTGCACCATCATTGA
GCCATCATGGCCATCATGCTTGAAGTTCAATGCGTTCTTTTCTCAATACC
AATGCTCTTACACCTGACAGCAATTCTTGTTATTGTGCTCACACAAAACG
GGATGCGAGAGAATCAACGATATCTTTTCATTAATTTGAGCGCATCAGAA
GCTTTAATCTGTTTTATCGGAATCATAAAACGGATATGCAAAATCTACGC
CTTGAAGACGGCAGGAACCTACGTACGGTTCGTTCAAGCTGGCGTTGCTA
CGTTTGCGTACTATTTCATCATGATGTACTTAACGCTTGATCGATTCTGC
GAAGTCTTTCTCAATATTAAATATCCGACTTATTTCCCACCGTCAAGAAC
TCTTATAGTTATAGGAATCATATGGAGCGTGTCCGTCATATTTGCGGCTA
CGTTATGCGGACTTAACACGTATAATCCGGACAACCCACAACAGATCTTA
ACATACTTTTATTTCGTCTTTGGGGTTTTATGTATCGTTGTTTCCCTAAT
TACGTATTCATATATCTTACGTAAAATCTACGTTAATAAAACCCTGGAAG
CGAATCAAGTGAGTAGTATTTCATCTTCACATCAAGAACAAGTCAAGCAA
TGGAAGAAACTTATCCAGAGCATGTACCTCCCTGTCTTACTACTCAtctc
atttttcatcttcgtcatCATCCCTGAAATCACATACTTCATCTACGATC
TACATCAACTTGAAATGTCGGATGCTCTTTCAACCGTATTGACGACGTCG
TATTTCATTGCGTACACGTCAGACGTCTTTATATACGTCTTGGGCTCCAA
ACATATACGCAAAACTCTATTGAGAAAACTCAAAGTAAGAAACAATAAAA
TTGGAGATACGTCGACGACCACTCCTTCCTATATAACTCCTTGATTTGAC
ACAAAACTATTCTAATTGGAATGCTGTAAATTAATACCCTTATTTATTGT
AAATATGCTGTAAATATTAGACATTATAGTGTAATGTTATTTATCATATC
GTCATAtattaaattttccattttaagaaaattttaagaattattCTGAT
GCATAACCCCTCATAAATTATAACCAATCTGTAGCATTAAATTGAGCTTA
ACAATGATTGCTTGTATTCTAATCAAAAATGTTTATTAACAAATAATACC
TGTTGGAAAAATAATTATGTGTGGATTTTTTTTAGT Run BLAST on NCBI protein sequence of TCONS_00062460-protein >TCONS_00062460-protein ID=TCONS_00062460-protein|Name=TCONS_00062460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MAIMLEVQCVLFSIPMLLHLTAILVIVLTQNGMRENQRYLFINLSASEAL
ICFIGIIKRICKIYALKTAGTYVRFVQAGVATFAYYFIMMYLTLDRFCEV
FLNIKYPTYFPPSRTLIVIGIIWSVSVIFAATLCGLNTYNPDNPQQILTY
FYFVFGVLCIVVSLITYSYILRKIYVNKTLEANQVSSISSSHQEQVKQWK
KLIQSMYLPVLLLISFFIFVIIPEITYFIYDLHQLEMSDALSTVLTTSYF
IAYTSDVFIYVLGSKHIRKTLLRKLKVRNNKIGDTSTTTPSYITP Run BLAST on NCBI transcript from alignment at scaffold_364:280103..281588 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062460 ID=TCONS_00062460|Name=TCONS_00062460|organism=Clytia hemisphaerica|type=transcript|length=1486bp|location=Sequence derived from alignment at scaffold_364:280103..281588 (Clytia hemisphaerica)
ACTAAAAAAAATCCACACATAATTATTTTTCCAACAGGTATTATTTGTTA
ATAAACATTTTTGATTAGAATACAAGCAATCATTGTTAAGCTCAATTTAA
TGCTACAGATTGGTTATAATTTATGAGGGGTTATGCATCAGaataattct
taaaattttcttaaaatggaaaatttaataTATGACGATATGATAAATAA
CATTACACTATAATGTCTAATATTTACAGCATATTTACAATAAATAAGGG
TATTAATTTACAGCATTCCAATTAGAATAGTTTTGTGTCAAATCAAGGAG
TTATATAGGAAGGAGTGGTCGTCGACGTATCTCCAATTTTATTGTTTCTT
ACTTTGAGTTTTCTCAATAGAGTTTTGCGTATATGTTTGGAGCCCAAGAC
GTATATAAAGACGTCTGACGTGTACGCAATGAAATACGACGTCGTCAATA
CGGTTGAAAGAGCATCCGACATTTCAAGTTGATGTAGATCGTAGATGAAG
TATGTGATTTCAGGGATGatgacgaagatgaaaaatgagaTGAGTAGTAA
GACAGGGAGGTACATGCTCTGGATAAGTTTCTTCCATTGCTTGACTTGTT
CTTGATGTGAAGATGAAATACTACTCACTTGATTCGCTTCCAGGGTTTTA
TTAACGTAGATTTTACGTAAGATATATGAATACGTAATTAGGGAAACAAC
GATACATAAAACCCCAAAGACGAAATAAAAGTATGTTAAGATCTGTTGTG
GGTTGTCCGGATTATACGTGTTAAGTCCGCATAACGTAGCCGCAAATATG
ACGGACACGCTCCATATGATTCCTATAACTATAAGAGTTCTTGACGGTGG
GAAATAAGTCGGATATTTAATATTGAGAAAGACTTCGCAGAATCGATCAA
GCGTTAAGTACATCATGATGAAATAGTACGCAAACGTAGCAACGCCAGCT
TGAACGAACCGTACGTAGGTTCCTGCCGTCTTCAAGGCGTAGATTTTGCA
TATCCGTTTTATGATTCCGATAAAACAGATTAAAGCTTCTGATGCGCTCA
AATTAATGAAAAGATATCGTTGATTCTCTCGCATCCCGTTTTGTGTGAGC
ACAATAACAAGAATTGCTGTCAGGTGTAAGAGCATTGGTATTGAGAAAAG
AACGCATTGAACTTCAAGCATGATGGCCATGATGGCTCAATGATGGTGCA
CTTTTTCCCGTAGCTTTTTCAGTAGCGGtaactcaatgttggtgcacGTA
ATTTCTAATGATGTTTCTTCAGCAGCGGTCAGTTTTAGAATGAACCAAAG
TTTGGaggatgtttttcttttgtatgaATTGAGATATCCAAATCTTATGA
TTATTTATCTCTTTAGTTTAGTTATCCATTTCTTTGTTATCTCTTTAANA
TCTTATGATTATTTATCTCTTTAGTTTAGTTATCCATTTCTTTGTTATCT
CTTTAATATACCAACCTTGTATGACGTGAGTTTATA Coding sequence (CDS) from alignment at scaffold_364:280103..281588 >TCONS_00062460 ID=TCONS_00062460|Name=TCONS_00062460|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_364:280103..281588 (Clytia hemisphaerica)
TCAAGGAGTTATATAGGAAGGAGTGGTCGTCGACGTATCTCCAATTTTAT
TGTTTCTTACTTTGAGTTTTCTCAATAGAGTTTTGCGTATATGTTTGGAG
CCCAAGACGTATATAAAGACGTCTGACGTGTACGCAATGAAATACGACGT
CGTCAATACGGTTGAAAGAGCATCCGACATTTCAAGTTGATGTAGATCGT
AGATGAAGTATGTGATTTCAGGGATGatgacgaagatgaaaaatgagaTG
AGTAGTAAGACAGGGAGGTACATGCTCTGGATAAGTTTCTTCCATTGCTT
GACTTGTTCTTGATGTGAAGATGAAATACTACTCACTTGATTCGCTTCCA
GGGTTTTATTAACGTAGATTTTACGTAAGATATATGAATACGTAATTAGG
GAAACAACGATACATAAAACCCCAAAGACGAAATAAAAGTATGTTAAGAT
CTGTTGTGGGTTGTCCGGATTATACGTGTTAAGTCCGCATAACGTAGCCG
CAAATATGACGGACACGCTCCATATGATTCCTATAACTATAAGAGTTCTT
GACGGTGGGAAATAAGTCGGATATTTAATATTGAGAAAGACTTCGCAGAA
TCGATCAAGCGTTAAGTACATCATGATGAAATAGTACGCAAACGTAGCAA
CGCCAGCTTGAACGAACCGTACGTAGGTTCCTGCCGTCTTCAAGGCGTAG
ATTTTGCATATCCGTTTTATGATTCCGATAAAACAGATTAAAGCTTCTGA
TGCGCTCAAATTAATGAAAAGATATCGTTGATTCTCTCGCATCCCGTTTT
GTGTGAGCACAATAACAAGAATTGCTGTCAGGTGTAAGAGCATTGGTATT
GAGAAAAGAACGCATTGAACTTCAAGCATGATGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062460-exon-scaffold_364-1491911889:280103..281588 | TCONS_00062460-exon-scaffold_364-1491911889:280103..281588 | Clytia hemisphaerica | exon |
| TCONS_00062460-exon-scaffold_364-1510915933:280103..281588 | TCONS_00062460-exon-scaffold_364-1510915933:280103..281588 | Clytia hemisphaerica | exon |
| TCONS_00062460-exon-scaffold_364-1575043694:280103..281588 | TCONS_00062460-exon-scaffold_364-1575043694:280103..281588 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:280103..281588 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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