TCONS_00062473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062473
Unique NameTCONS_00062473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062473 ID=TCONS_00062473|Name=TCONS_00062473|organism=Clytia hemisphaerica|type=transcript|length=367bp
atattgtaataattatgcatggttttatcattgtttttctgctggactac
ataattattcaacagggtggcctctttgaaaaaggtctattcaaaatAGC
CCAAACATAGCGAGGATCATTTGAAATGTTTGAATCATTCAATGAACAtc
attttgggagttcaaaagtACCTCTTCATCAGATACGCGTCTGGGAACca
tttggtgtaagaaaaacATTTCCTTTCCATTTGTTTGTCTGGAATAGAAA
AAAGAATcctttctgattggatgaaaccACATTTACCTTCATTTGATTGT
ATACAGTACTTCGTTTTTATACatcaatattttgattggaCAAAATGAAA
CAATCGATATCACCGTG
Run BLAST on NCBI

transcript from alignment at scaffold_364:398445..398811

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062473 ID=TCONS_00062473|Name=TCONS_00062473|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at scaffold_364:398445..398811 (Clytia hemisphaerica)
CACGGTGATATCGATTGTTTCATTTTGtccaatcaaaatattgatGTATA
AAAACGAAGTACTGTATACAATCAAATGAAGGTAAATGTggtttcatcca
atcagaaaggATTCTTTTTTCTATTCCAGACAAACAAATGGAAAGGAAAT
gtttttcttacaccaaatgGTTCCCAGACGCGTATCTGATGAAGAGGTac
ttttgaactcccaaaatgaTGTTCATTGAATGATTCAAACATTTCAAATG
ATCCTCGCTATGTTTGGGCTattttgaatagacctttttcaaagaggcca
ccctgttgaataattatgtagtccagcagaaaaacaatgataaaaccatg
cataattattacaatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039140XLOC_039140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062473-exon-scaffold_364-1491911889:398445..398811TCONS_00062473-exon-scaffold_364-1491911889:398445..398811Clytia hemisphaericaexon
TCONS_00062473-exon-scaffold_364-1510915933:398445..398811TCONS_00062473-exon-scaffold_364-1510915933:398445..398811Clytia hemisphaericaexon
TCONS_00062473-exon-scaffold_364-1575043694:398445..398811TCONS_00062473-exon-scaffold_364-1575043694:398445..398811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:398445..398811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.480494	0	2.32459	0.587578	0.946381	0.505893	1.20912	1.68535	0.397888	0	1.423	0.654876	0.644989	0.487202	0.808418	0.573735	0	0.179556	1.29159	0.2727	0	0.718039	0	0.910292	0.24771	0.222041	0	0	0.592208	0.300479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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