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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062475 ID=TCONS_00062475|Name=TCONS_00062475|organism=Clytia hemisphaerica|type=transcript|length=3352bpRun BLAST on NCBI protein sequence of TCONS_00062475-protein >TCONS_00062475-protein ID=TCONS_00062475-protein|Name=TCONS_00062475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=675bp YFYVTGRLLKDKQTKEINMSLPPEKVNELKQVIHAHLNQLDIHGQIKNIVRun BLAST on NCBI transcript from alignment at scaffold_365:26976..108421+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062475 ID=TCONS_00062475|Name=TCONS_00062475|organism=Clytia hemisphaerica|type=transcript|length=81446bp|location=Sequence derived from alignment at scaffold_365:26976..108421+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_365:26976..108421+ >TCONS_00062475 ID=TCONS_00062475|Name=TCONS_00062475|organism=Clytia hemisphaerica|type=CDS|length=28392bp|location=Sequence derived from alignment at scaffold_365:26976..108421+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062475 vs. Swiss-Prot (Human)
Match: CEP76 (Centrosomal protein of 76 kDa OS=Homo sapiens GN=CEP76 PE=1 SV=1) HSP 1 Score: 741.11 bits (1912), Expect = 0.000e+0 Identity = 363/664 (54.67%), Postives = 492/664 (74.10%), Query Frame = 3
Query: 57 MSLPPEKVNELKQVIHAHLNQLDIHGQIKNIVNESMKNTSLDESREDEEKNVLKMLKEQGVVDDILSTLKFQGLKDKQ----TPSKRVLKDKEGKWIPDEDRRFPIDPGKRYLYFQVTGGRAFLEHLQDPEPYPGRVCSYFTLHVNFMGQRYHSKDIACACEPAFDEAFLLEIKPHSSND--KQPDTRNLLTINDKIHVVIIRTEPSGESHLIGSHYLEWRGIVCNTSSRMQNSVEINGIGAESNVPIGILDIKMNLIPRLNQVTTTDVITTQLNLERTRVAERDRLFLAYSKQWWREYLQIRSTHSNRLVKIFAQDENSIHRFVCSYLRPLRSGRLLDTPRQAARFVSLLGYEKHPVVSGT-RTEMWTSMHSFLARGKGDVEDHCVXXXXXXXXXXXDAYVCIGTKAKGISHAWVVTINPDGTVLFWESLTAQRHQHQEINPHDPPLAKQKQPSYQYRTVGCIFNHQAFYANSQPTDGVHVCAFDLSNKSAWKSMSADAIRSVCGSGLSPKLLGAVNLVPTNIDPILKSNDLEMELRSLVFDHRNXXXXXXXXXXXXCYLLSPALAAYEFDYSTGVSVGNDDFQNGIRRNVPDGHTFKGFPIQFIHMNARRAFAACLRSPMCEEIICCRGDQVRLAVRVRIFPYPERACAVWIMFAVKYKSVL 2027
MSLPPEK +ELKQ+IH L+++D+HG+I+ I+ E+++ + + ++++K L+ +G++DD++ L F +Q +P + + D++ ++ IDP +RYLY QV GG+AFLEHLQ+PEP PG+VCS FTL +++ QR+ SK + CACEP F + FLLE+ S D + D+ +L+I+D IH+V+I+T+ GE+ L+ S++LEWR ++ + + +VE+ G+G ES V +GIL+IK+ + P LNQ + +V+ TQL LER + AE++RLFL Y+KQWWREYLQIR +H++RLVKIFAQDEN I+R VCSY++PLR+GRLLDTPRQAARFV++LGYE+ PV+ G + E W ++ +FL R KGD EDH LLCSLLLG+GL+A+VC+GTKAKG+ HAWV+T DG + FWESLT R+ H+ NP +PP+A+Q +P Y YRT+GC+FNHQ F N QP+D V C FDL+++S WK MS +AI+SVC G + L L + ID + SN++EM+LR LV +HR DLGLTT W+D L YLLSPALA+YEF+ +T +S GN++FQ+ IRR VPDGHTFKGFPI F++ NARRAFA CLRSP CEEIICCRGDQVRLAVRVR+F YPE ACAVWIMFA KY+SVL
Sbjct: 1 MSLPPEKASELKQLIHQQLSKMDVHGRIREILAETIREELAPDQQHLSTEDLIKALRRRGIIDDVMKELNFVTDSVEQELPSSPKQPICFDRQSTL-----KKTNIDPTRRYLYLQVLGGKAFLEHLQEPEPLPGQVCSTFTLCLHYRNQRFRSKPVPCACEPDFHDGFLLEVHRESLGDGTRMADSTTMLSISDPIHMVLIKTDIFGETTLVASYFLEWRSVLGSENGVTSLTVELMGVGTESKVSVGILNIKLEMYPPLNQTLSQEVVNTQLALERQKTAEKERLFLVYAKQWWREYLQIRPSHNSRLVKIFAQDENGINRPVCSYVKPLRAGRLLDTPRQAARFVNVLGYERAPVIGGGGKQEQWCTLLAFLCRNKGDCEDHANLLCSLLLGYGLEAFVCVGTKAKGVPHAWVMTCGTDGAITFWESLTGHRYIHKPTNPDEPPVAEQPKPLYPYRTIGCVFNHQMFLGNCQPSDAVETCVFDLNDESKWKPMSEEAIKSVCAPGATTSLPPFPPLCASTIDASVTSNEIEMQLRLLVSEHRKDLGLTTVWEDQLSYLLSPALASYEFERTTSISAGNEEFQDAIRRAVPDGHTFKGFPIHFVYRNARRAFATCLRSPFCEEIICCRGDQVRLAVRVRVFTYPESACAVWIMFACKYRSVL 659 The following BLAST results are available for this feature:
BLAST of TCONS_00062475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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