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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062515 ID=TCONS_00062515|Name=TCONS_00062515|organism=Clytia hemisphaerica|type=transcript|length=1701bp
CCTTAAATAAAGAATTTGATTGAAAGTGATAGTTTCGACATTCAGCAAGG
GTCAAATTAAAGCAGGTTTTTGATGCATGTTATACTTGAATCATTATGAA
GTGCTAATAACTATATTACAATTAATGaataaaactgaataaaaaattac
GATAAATTCAATGCTTGAATAATGTTCATAAAGATGCCAGAGGCAGGTAA
ATTTACATTTGCTGGTATACTTTATGACGGCCATTATACTGCCTACATTC
TGTTATGTATAAATTTGTATGCAAGTCATTTCTGCAGTGCCAAAGATGTA
AAATTATTTTGGCAATTAAGAGGATCTTGAAGAATTTTGTCAGTTCTTGT
CAAATAAAAGGTCTTTGTGTAAtaaatattgttttcattttttgttttct
tgttccaaaatctttttaatttctttcacAACTTTTGGCATATTTTCTTC
ATATTCTTCTTCATTGGTGAACATATAATACAACTTCGATCCCATGATCA
TATCCAAACTATGTCCACCTCTAGGTTCGAAATCTTCCTCCAATTTCAAT
GGAATGAATGGTTTCTTCTTCTTACTGACAAATTCGTATTGAAACTTGTT
AAGTTCGTCCATCTCGTATTTTTCAGTCagacaaatcaaaacaactttaG
CTTTGTTGATTATCTCATTGATTGGCCTTTCGTCGTCATCGCTGGGATTG
TAGATTCGAATGCTATTATCGTCATTCAAACACTTTGCAATGGTATCAAC
GGTTGATTTGGAATcataatgaaatgaaatgaaaacatCACATTCCTCGC
CATCATCAGCACCACCACCACCAGAGCCTTTAGACAACACTTCAATCaat
gcttcatttttctgtGCTTTTGCCAGATCTAATGGTGTTTCTTCTTTTCC
ATCACGTTCAGATTTCAAAGAAACATCAGCTCCAGCTTTGACCAACTTTT
TCACAATCTTCAACAATGCTGTTgatttttcttcatctttcaATCGAAGC
AAATAACTGTAACAGACTTCGTACAAGACACTCTGTTTAAATTGTTCGTT
GAAAGTGTTCAAATCAAGTTTCTCTTCCTTCAAGAGATAACTCAGACACT
TCACTGCACAGTGTTTATAAGCAGCATGTCGAATCAAACCACCTCTAGAG
CAAGACACATTCAAATCAGCACCTTTCTCTTTCAAGAATTTCAGCAACTC
AAGATCATCTCTTTCGATAGCAGCATGGACAGGCACAAACTTGTTCCATC
CTGGTTTGTTAATATCAGCTTTCTCTTCGATCAGATGCTCAATGATTTCA
CGATGCCCTGATACACAGGCTTGATATAGTGGTCTGATTGTTTTGCCATC
TTTCTTGTTGACTTCAGCCCCGTTGTCAATCAATATTTTGACAGCTTCCA
AGTTTCCCTTTTCACAGGCTAAAGTTAAaggtgttttgattttgatagct
TCGTCCTCTGCCtcttcaaaaacttgatttagTTTTTCTTTATCATCGAA
ATTTTTCAGCGTATCCAAATCCTCGTTTTGTAGGGCTTCAAGAATATCCA
TTTTCGCGACGACACAGGACAAAAAAGTTGAagttctttttctgtttttg
ctTTCGTTCTACACTGAAATNtaaaaaaaattgaagttctttttctgttt
ttgctTCGTTCTACACTGAAATACGATtttaatgtttcatttttatgtgA
G Run BLAST on NCBI protein sequence of TCONS_00062515-protein >TCONS_00062515-protein ID=TCONS_00062515-protein|Name=TCONS_00062515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MDILEALQNEDLDTLKNFDDKEKLNQVFEEAEDEAIKIKTPLTLACEKGN
LEAVKILIDNGAEVNKKDGKTIRPLYQACVSGHREIIEHLIEEKADINKP
GWNKFVPVHAAIERDDLELLKFLKEKGADLNVSCSRGGLIRHAAYKHCAV
KCLSYLLKEEKLDLNTFNEQFKQSVLYEVCYSYLLRLKDEEKSTALLKIV
KKLVKAGADVSLKSERDGKEETPLDLAKAQKNEALIEVLSKGSGGGGADD
GEECDVFISFHYDSKSTVDTIAKCLNDDNSIRIYNPSDDDERPINEIINK
AKVVLICLTEKYEMDELNKFQYEFVSKKKKPFIPLKLEEDFEPRGGHSLD
MIMGSKLYYMFTNEEEYEENMPKVVKEIKKILEQENKK Run BLAST on NCBI transcript from alignment at scaffold_367:94808..96508 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062515 ID=TCONS_00062515|Name=TCONS_00062515|organism=Clytia hemisphaerica|type=transcript|length=1701bp|location=Sequence derived from alignment at scaffold_367:94808..96508 (Clytia hemisphaerica)
CTcacataaaaatgaaacattaaaATCGTATTTCAGTGTAGAACGAagca
aaaacagaaaaagaacttcaattttttttaNATTTCAGTGTAGAACGAAa
gcaaaaacagaaaaagaactTCAACTTTTTTGTCCTGTGTCGTCGCGAAA
ATGGATATTCTTGAAGCCCTACAAAACGAGGATTTGGATACGCTGAAAAA
TTTCGATGATAAAGAAAAActaaatcaagtttttgaagaGGCAGAGGACG
AagctatcaaaatcaaaacacctTTAACTTTAGCCTGTGAAAAGGGAAAC
TTGGAAGCTGTCAAAATATTGATTGACAACGGGGCTGAAGTCAACAAGAA
AGATGGCAAAACAATCAGACCACTATATCAAGCCTGTGTATCAGGGCATC
GTGAAATCATTGAGCATCTGATCGAAGAGAAAGCTGATATTAACAAACCA
GGATGGAACAAGTTTGTGCCTGTCCATGCTGCTATCGAAAGAGATGATCT
TGAGTTGCTGAAATTCTTGAAAGAGAAAGGTGCTGATTTGAATGTGTCTT
GCTCTAGAGGTGGTTTGATTCGACATGCTGCTTATAAACACTGTGCAGTG
AAGTGTCTGAGTTATCTCTTGAAGGAAGAGAAACTTGATTTGAACACTTT
CAACGAACAATTTAAACAGAGTGTCTTGTACGAAGTCTGTTACAGTTATT
TGCTTCGATtgaaagatgaagaaaaatcAACAGCATTGTTGAAGATTGTG
AAAAAGTTGGTCAAAGCTGGAGCTGATGTTTCTTTGAAATCTGAACGTGA
TGGAAAAGAAGAAACACCATTAGATCTGGCAAAAGCacagaaaaatgaag
cattGATTGAAGTGTTGTCTAAAGGCTCTGGTGGTGGTGGTGCTGATGAT
GGCGAGGAATGTGatgttttcatttcatttcattatgATTCCAAATCAAC
CGTTGATACCATTGCAAAGTGTTTGAATGACGATAATAGCATTCGAATCT
ACAATCCCAGCGATGACGACGAAAGGCCAATCAATGAGATAATCAACAAA
GCtaaagttgttttgatttgtctGACTGAAAAATACGAGATGGACGAACT
TAACAAGTTTCAATACGAATTTGTCAGTAAGAAGAAGAAACCATTCATTC
CATTGAAATTGGAGGAAGATTTCGAACCTAGAGGTGGACATAGTTTGGAT
ATGATCATGGGATCGAAGTTGTATTATATGTTCACCAATGAAGAAGAATA
TGAAGAAAATATGCCAAAAGTTgtgaaagaaattaaaaagattttggaac
aagaaaacaaaaaatgaaaacaatatttaTTACACAAAGACCTTTTATTT
GACAAGAACTGACAAAATTCTTCAAGATCCTCTTAATTGCCAAAATAATT
TTACATCTTTGGCACTGCAGAAATGACTTGCATACAAATTTATACATAAC
AGAATGTAGGCAGTATAATGGCCGTCATAAAGTATACCAGCAAATGTAAA
TTTACCTGCCTCTGGCATCTTTATGAACATTATTCAAGCATTGAATTTAT
CgtaattttttattcagttttattCATTAATTGTAATATAGTTATTAGCA
CTTCATAATGATTCAAGTATAACATGCATCAAAAACCTGCTTTAATTTGA
CCCTTGCTGAATGTCGAAACTATCACTTTCAATCAAATTCTTTATTTAAG
G Coding sequence (CDS) from alignment at scaffold_367:94808..96508 >TCONS_00062515 ID=TCONS_00062515|Name=TCONS_00062515|organism=Clytia hemisphaerica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_367:94808..96508 (Clytia hemisphaerica)
ATGGATATTCTTGAAGCCCTACAAAACGAGGATTTGGATACGCTGAAAAA
TTTCGATGATAAAGAAAAActaaatcaagtttttgaagaGGCAGAGGACG
AagctatcaaaatcaaaacacctTTAACTTTAGCCTGTGAAAAGGGAAAC
TTGGAAGCTGTCAAAATATTGATTGACAACGGGGCTGAAGTCAACAAGAA
AGATGGCAAAACAATCAGACCACTATATCAAGCCTGTGTATCAGGGCATC
GTGAAATCATTGAGCATCTGATCGAAGAGAAAGCTGATATTAACAAACCA
GGATGGAACAAGTTTGTGCCTGTCCATGCTGCTATCGAAAGAGATGATCT
TGAGTTGCTGAAATTCTTGAAAGAGAAAGGTGCTGATTTGAATGTGTCTT
GCTCTAGAGGTGGTTTGATTCGACATGCTGCTTATAAACACTGTGCAGTG
AAGTGTCTGAGTTATCTCTTGAAGGAAGAGAAACTTGATTTGAACACTTT
CAACGAACAATTTAAACAGAGTGTCTTGTACGAAGTCTGTTACAGTTATT
TGCTTCGATtgaaagatgaagaaaaatcAACAGCATTGTTGAAGATTGTG
AAAAAGTTGGTCAAAGCTGGAGCTGATGTTTCTTTGAAATCTGAACGTGA
TGGAAAAGAAGAAACACCATTAGATCTGGCAAAAGCacagaaaaatgaag
cattGATTGAAGTGTTGTCTAAAGGCTCTGGTGGTGGTGGTGCTGATGAT
GGCGAGGAATGTGatgttttcatttcatttcattatgATTCCAAATCAAC
CGTTGATACCATTGCAAAGTGTTTGAATGACGATAATAGCATTCGAATCT
ACAATCCCAGCGATGACGACGAAAGGCCAATCAATGAGATAATCAACAAA
GCtaaagttgttttgatttgtctGACTGAAAAATACGAGATGGACGAACT
TAACAAGTTTCAATACGAATTTGTCAGTAAGAAGAAGAAACCATTCATTC
CATTGAAATTGGAGGAAGATTTCGAACCTAGAGGTGGACATAGTTTGGAT
ATGATCATGGGATCGAAGTTGTATTATATGTTCACCAATGAAGAAGAATA
TGAAGAAAATATGCCAAAAGTTgtgaaagaaattaaaaagattttggaac
aagaaaacaaaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062515-exon-scaffold_367-1491911889:94808..96508 | TCONS_00062515-exon-scaffold_367-1491911889:94808..96508 | Clytia hemisphaerica | exon |
| TCONS_00062515-exon-scaffold_367-1510915933:94808..96508 | TCONS_00062515-exon-scaffold_367-1510915933:94808..96508 | Clytia hemisphaerica | exon |
| TCONS_00062515-exon-scaffold_367-1575043694:94808..96508 | TCONS_00062515-exon-scaffold_367-1575043694:94808..96508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_367 | supercontig | scaffold_367:94808..96508 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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