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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062516 ID=TCONS_00062516|Name=TCONS_00062516|organism=Clytia hemisphaerica|type=transcript|length=1139bp
CAGAATGTCCTCTAATTTTCTTAGCTTAAAAAAAACACGATCATTTATCA
CCAACTGAATAAGTATAAacatgttttgatattttgtttgcttatcaatg
tttttatttgttttctttttaaattgaatGTTGTATGTTCCTGTAAAAAT
ATGTGTTGCAAAAACACAATcccaagtaaaaaaaattacatataatccat
ctataaaaattaaaatataaaatttttgtgGTAAATAAACTAtcgagaaa
attaaaaaagcaaaattGCCCATAATTATAATTATATTTACATTATAATG
TTTTTTAATTCGTTGACCAAAACCAACATAAAGATCCCCATTagcatatt
tttataaaatttttgattctcTGTTTATAACATAAAGTTTGTTGTGTAAA
AATTAAAACTCCTCTAGAGGAATCCAATTCAACCATCTTAAAAATTCTGG
AAATGAAACAAGGCCATTTGCATCTTTGTCAAGCTCTTTTAATGCTTTGT
CAAGATTATGAGGTTTCCCACCAACTTCTTTGAACAGTTTTTTGAATTCA
CCTTTATCTAAAGCATGACTTTTATCAACATCGTATTTATTAAATAAGTC
AACTGCTTTCACTAACCGATGGTATCTACAtttgtcattaatatttttaa
atttctctcCACTTTTTAACCAGGAGTTAAATTCATCAAAAGATACTTGT
CCATTGCCATCCCTATCAAGTAGCAAAGCATAAGCATCTGCTTGCTCATT
GTTAAACCCAAGATCTTGCTTGAAAAGTACAGCCAACTCAGATTTGCTGA
GTTGCCCACTGCCATCTTTGTCGTATTTGTaaaacaaacttttcaaaaca
acagcAGGAGCATTGGGGTCAAAGAAGGTTTTAGCCCCCATGTTTTTAGC
CATGTTTccttgaagtattgaaaaaagctaaaaaaacacAACAAGTAAAG
ACGCAAAAGACAACCAAACTACAAGAGGTTAAGCTTGATGCTTGTCGGAG
GCCAAAGTGAAGTGAAAGAACGAAGGAGGGAGTCTTCCGCTTTTTCAAGG
CTAccatttttaatgttttgacgGGTGCCATCGAGCCAAAATGTGCGCTC
GCTTCTAACGTAAACATTGCTCGCCCACCCATACATTTC Run BLAST on NCBI protein sequence of TCONS_00062516-protein >TCONS_00062516-protein ID=TCONS_00062516-protein|Name=TCONS_00062516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MAKNMGAKTFFDPNAPAVVLKSLFYKYDKDGSGQLSKSELAVLFKQDLGF
NNEQADAYALLLDRDGNGQVSFDEFNSWLKSGEKFKNINDKCRYHRLVKA
VDLFNKYDVDKSHALDKGEFKKLFKEVGGKPHNLDKALKELDKDANGLVS
FPEFLRWLNWIPLEEF Run BLAST on NCBI transcript from alignment at scaffold_367:141434..142572 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062516 ID=TCONS_00062516|Name=TCONS_00062516|organism=Clytia hemisphaerica|type=transcript|length=1139bp|location=Sequence derived from alignment at scaffold_367:141434..142572 (Clytia hemisphaerica)
GAAATGTATGGGTGGGCGAGCAATGTTTACGTTAGAAGCGAGCGCACATT
TTGGCTCGATGGCACCcgtcaaaacattaaaaatggTAGCCTTGAAAAAG
CGGAAGACTCCCTCCTTCGTTCTTTCACTTCACTTTGGCCTCCGACAAGC
ATCAAGCTTAACCTCTTGTAGTTTGGTTGTCTTTTGCGTCTTTACTTGTT
gtgtttttttagcttttttcaatacttcaaggAAACATGGCTAAAAACAT
GGGGGCTAAAACCTTCTTTGACCCCAATGCTCCTgctgttgttttgaaaa
gtttgttttACAAATACGACAAAGATGGCAGTGGGCAACTCAGCAAATCT
GAGTTGGCTGTACTTTTCAAGCAAGATCTTGGGTTTAACAATGAGCAAGC
AGATGCTTATGCTTTGCTACTTGATAGGGATGGCAATGGACAAGTATCTT
TTGATGAATTTAACTCCTGGTTAAAAAGTGgagagaaatttaaaaatatt
aatgacaaaTGTAGATACCATCGGTTAGTGAAAGCAGTTGACTTATTTAA
TAAATACGATGTTGATAAAAGTCATGCTTTAGATAAAGGTGAATTCAAAA
AACTGTTCAAAGAAGTTGGTGGGAAACCTCATAATCTTGACAAAGCATTA
AAAGAGCTTGACAAAGATGCAAATGGCCTTGTTTCATTTCCAGAATTTTT
AAGATGGTTGAATTGGATTCCTCTAGAGGAGTTTTAATTTTTACACAACA
AACTTTATGTTATAAACAgagaatcaaaaattttataaaaatatgctAAT
GGGGATCTTTATGTTGGTTTTGGTCAACGAATTAAAAAACATTATAATGT
AAATATAATTATAATTATGGGCaattttgcttttttaattttctcgaTAG
TTTATTTACcacaaaaattttatattttaatttttatagatggattatat
gtaattttttttacttgggATTGTGTTTTTGCAACACATATTTTTACAGG
AACATACAACattcaatttaaaaagaaaacaaataaaaacattgataagc
aaacaaaatatcaaaacatgtTTATACTTATTCAGTTGGTGATAAATGAT
CGTGTTTTTTTTAAGCTAAGAAAATTAGAGGACATTCTG Coding sequence (CDS) from alignment at scaffold_367:141434..142572 >TCONS_00062516 ID=TCONS_00062516|Name=TCONS_00062516|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_367:141434..142572 (Clytia hemisphaerica)
ATGGCTAAAAACATGGGGGCTAAAACCTTCTTTGACCCCAATGCTCCTgc
tgttgttttgaaaagtttgttttACAAATACGACAAAGATGGCAGTGGGC
AACTCAGCAAATCTGAGTTGGCTGTACTTTTCAAGCAAGATCTTGGGTTT
AACAATGAGCAAGCAGATGCTTATGCTTTGCTACTTGATAGGGATGGCAA
TGGACAAGTATCTTTTGATGAATTTAACTCCTGGTTAAAAAGTGgagaga
aatttaaaaatattaatgacaaaTGTAGATACCATCGGTTAGTGAAAGCA
GTTGACTTATTTAATAAATACGATGTTGATAAAAGTCATGCTTTAGATAA
AGGTGAATTCAAAAAACTGTTCAAAGAAGTTGGTGGGAAACCTCATAATC
TTGACAAAGCATTAAAAGAGCTTGACAAAGATGCAAATGGCCTTGTTTCA
TTTCCAGAATTTTTAAGATGGTTGAATTGGATTCCTCTAGAGGAGTTTTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062516-exon-scaffold_367-1491911889:141434..142572 | TCONS_00062516-exon-scaffold_367-1491911889:141434..142572 | Clytia hemisphaerica | exon |
| TCONS_00062516-exon-scaffold_367-1510915933:141434..142572 | TCONS_00062516-exon-scaffold_367-1510915933:141434..142572 | Clytia hemisphaerica | exon |
| TCONS_00062516-exon-scaffold_367-1575043694:141434..142572 | TCONS_00062516-exon-scaffold_367-1575043694:141434..142572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_367 | supercontig | scaffold_367:141434..142572 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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