|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062523 ID=TCONS_00062523|Name=TCONS_00062523|organism=Clytia hemisphaerica|type=transcript|length=1411bp
ATTAACTGCATCTTGTTGTGACCGTTTCTCAAAAATGTTGACCAGTACGA
CTGCCGTGGCATCTTCTGTTGCAGGTTGGTGATGAAAATATCCCGCCCTG
GCTCTCCACGTTTGAGTTACGTCATTTGCTTAATGGTGTTGTCTCGGTAG
GAATCAAAAATGATATAGAGGCGATTTACTGGGCTTCCTGgtttgcaaaa
attgaaaaatttctttgcaTAATCTTCCCATGTATCAGCCACCTTAACTG
CTGCAAACCTGCCATGCCATCAATGAACCAATCAGGAGATTCTTTGGTTG
GTAGTTTACACTCAGCTTTTGCTTCATCCTTCAAATGATTTCGTAGTGTA
GCCTTGTTTCCTTGTCTGAGGGTGTTATCAGGATCTGCAAGAGCGAATGG
GAGCTTTGTCAATGGGTATTCCAATGCTTCTTCCGGAGATTTCACCTTTC
CAACCAGCAGACCAAAAGCTTGTCGGTCTTCTTTCAGAACGTCAatctgt
ttttctttcttcttttcttttttcaaaccaGTTGCAATACTTTCTCGTGG
GATTTTCTCGAAAAcgcttcttttttcttctttctttactTTGATTCGTT
CCTTGATAAATTTCTGCAACCGTTTTTCGCCGCGATTTTGCGAATCTAAC
AGGCCGTCGATGACACTAGTTTCAATCTTGACTCCAGACTTGAAATTACG
CGCAGGTCCATCCAAAAAGGGATCACAAAGGTCGTCAAGTTTCTTTGTCA
GATTTCGAACGGTTTCATCGTTTCGCTTTCGGGAGCCTGGAGACATTTCT
TTGTGAGCGCTGGATGTGACATACTCTAGCTTTTCTTCTACAGCTCTCCT
GATGGCGGCCATAAGGTGACTAGTTTTGATGAAGGTATCGTTGGCTCTTT
CTGAAGTACTGTATCCACCTCGCATTGGTCCACCTCTAACTTTGACTTCT
CGGTTGATGGTGGTTTCAGTGATCAAATCGCCATGAATTGTGGAAAATGG
TTCTCCTATCCTTGATCCACCGAACCCATTTTCCTTCAGGTCATCCCAAA
CGTCAGGTTTATTGATTTGAATGTTCTCCCAGCTAACATGTTGCACTGTG
AGATAACGACAGTAGTTAACATGGTCAAAAGCAAAACACTTTGGCAACAG
CTCTCTTTCTGCAGCAGCATGTAATTCAATGGATTTCTCCCTGACAGCAT
AAACCAATGCTAACATTTTCGATACATCTCTCATGTATTCCAGCATCATT
TTAGATTGGGTACCTTCACCTGGAACACACAAAAGATCTTTACACAAAAC
TTTGAATGATTCGAGTTCCATCAGCGTCGATAGGTTTTTCCCGTTCGTCT
CAGCCCGAAGATTTCTAATAGAATTTTTCAGTTCCTCGTCATTTGGAGCA
CTACTTTTCAG Run BLAST on NCBI protein sequence of TCONS_00062523-protein >TCONS_00062523-protein ID=TCONS_00062523-protein|Name=TCONS_00062523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
LKSSAPNDEELKNSIRNLRAETNGKNLSTLMELESFKVLCKDLLCVPGEG
TQSKMMLEYMRDVSKMLALVYAVREKSIELHAAAERELLPKCFAFDHVNY
CRYLTVQHVSWENIQINKPDVWDDLKENGFGGSRIGEPFSTIHGDLITET
TINREVKVRGGPMRGGYSTSERANDTFIKTSHLMAAIRRAVEEKLEYVTS
SAHKEMSPGSRKRNDETVRNLTKKLDDLCDPFLDGPARNFKSGVKIETSV
IDGLLDSQNRGEKRLQKFIKERIKVKKEEKRSVFEKIPRESIATGLKKEK
KKEKQIDVLKEDRQAFGLLVGKVKSPEEALEYPLTKLPFALADPDNTLRQ
GNKATLRNHLKDEAKAECKLPTKESPDWFIDGMAGLQQLRWLIHGKIMQR
NFSIFANQEAQ Run BLAST on NCBI transcript from alignment at scaffold_368:30543..31953 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062523 ID=TCONS_00062523|Name=TCONS_00062523|organism=Clytia hemisphaerica|type=transcript|length=1411bp|location=Sequence derived from alignment at scaffold_368:30543..31953 (Clytia hemisphaerica)
CTGAAAAGTAGTGCTCCAAATGACGAGGAACTGAAAAATTCTATTAGAAA
TCTTCGGGCTGAGACGAACGGGAAAAACCTATCGACGCTGATGGAACTCG
AATCATTCAAAGTTTTGTGTAAAGATCTTTTGTGTGTTCCAGGTGAAGGT
ACCCAATCTAAAATGATGCTGGAATACATGAGAGATGTATCGAAAATGTT
AGCATTGGTTTATGCTGTCAGGGAGAAATCCATTGAATTACATGCTGCTG
CAGAAAGAGAGCTGTTGCCAAAGTGTTTTGCTTTTGACCATGTTAACTAC
TGTCGTTATCTCACAGTGCAACATGTTAGCTGGGAGAACATTCAAATCAA
TAAACCTGACGTTTGGGATGACCTGAAGGAAAATGGGTTCGGTGGATCAA
GGATAGGAGAACCATTTTCCACAATTCATGGCGATTTGATCACTGAAACC
ACCATCAACCGAGAAGTCAAAGTTAGAGGTGGACCAATGCGAGGTGGATA
CAGTACTTCAGAAAGAGCCAACGATACCTTCATCAAAACTAGTCACCTTA
TGGCCGCCATCAGGAGAGCTGTAGAAGAAAAGCTAGAGTATGTCACATCC
AGCGCTCACAAAGAAATGTCTCCAGGCTCCCGAAAGCGAAACGATGAAAC
CGTTCGAAATCTGACAAAGAAACTTGACGACCTTTGTGATCCCTTTTTGG
ATGGACCTGCGCGTAATTTCAAGTCTGGAGTCAAGATTGAAACTAGTGTC
ATCGACGGCCTGTTAGATTCGCAAAATCGCGGCGAAAAACGGTTGCAGAA
ATTTATCAAGGAACGAATCAAagtaaagaaagaagaaaaaagaagcgTTT
TCGAGAAAATCCCACGAGAAAGTATTGCAACtggtttgaaaaaagaaaag
aagaaagaaaaacagatTGACGTTCTGAAAGAAGACCGACAAGCTTTTGG
TCTGCTGGTTGGAAAGGTGAAATCTCCGGAAGAAGCATTGGAATACCCAT
TGACAAAGCTCCCATTCGCTCTTGCAGATCCTGATAACACCCTCAGACAA
GGAAACAAGGCTACACTACGAAATCATTTGAAGGATGAAGCAAAAGCTGA
GTGTAAACTACCAACCAAAGAATCTCCTGATTGGTTCATTGATGGCATGG
CAGGTTTGCAGCAGTTAAGGTGGCTGATACATGGGAAGATTAtgcaaaga
aatttttcaatttttgcaaacCAGGAAGCCCAGTAAATCGCCTCTATATC
ATTTTTGATTCCTACCGAGACAACACCATTAAGCAAATGACGTAACTCAA
ACGTGGAGAGCCAGGGCGGGATATTTTCATCACCAACCTGCAACAGAAGA
TGCCACGGCAGTCGTACTGGTCAACATTTTTGAGAAACGGTCACAACAAG
ATGCAGTTAAT Coding sequence (CDS) from alignment at scaffold_368:30543..31953 >TCONS_00062523 ID=TCONS_00062523|Name=TCONS_00062523|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_368:30543..31953 (Clytia hemisphaerica)
CTGAAAAGTAGTGCTCCAAATGACGAGGAACTGAAAAATTCTATTAGAAA
TCTTCGGGCTGAGACGAACGGGAAAAACCTATCGACGCTGATGGAACTCG
AATCATTCAAAGTTTTGTGTAAAGATCTTTTGTGTGTTCCAGGTGAAGGT
ACCCAATCTAAAATGATGCTGGAATACATGAGAGATGTATCGAAAATGTT
AGCATTGGTTTATGCTGTCAGGGAGAAATCCATTGAATTACATGCTGCTG
CAGAAAGAGAGCTGTTGCCAAAGTGTTTTGCTTTTGACCATGTTAACTAC
TGTCGTTATCTCACAGTGCAACATGTTAGCTGGGAGAACATTCAAATCAA
TAAACCTGACGTTTGGGATGACCTGAAGGAAAATGGGTTCGGTGGATCAA
GGATAGGAGAACCATTTTCCACAATTCATGGCGATTTGATCACTGAAACC
ACCATCAACCGAGAAGTCAAAGTTAGAGGTGGACCAATGCGAGGTGGATA
CAGTACTTCAGAAAGAGCCAACGATACCTTCATCAAAACTAGTCACCTTA
TGGCCGCCATCAGGAGAGCTGTAGAAGAAAAGCTAGAGTATGTCACATCC
AGCGCTCACAAAGAAATGTCTCCAGGCTCCCGAAAGCGAAACGATGAAAC
CGTTCGAAATCTGACAAAGAAACTTGACGACCTTTGTGATCCCTTTTTGG
ATGGACCTGCGCGTAATTTCAAGTCTGGAGTCAAGATTGAAACTAGTGTC
ATCGACGGCCTGTTAGATTCGCAAAATCGCGGCGAAAAACGGTTGCAGAA
ATTTATCAAGGAACGAATCAAagtaaagaaagaagaaaaaagaagcgTTT
TCGAGAAAATCCCACGAGAAAGTATTGCAACtggtttgaaaaaagaaaag
aagaaagaaaaacagatTGACGTTCTGAAAGAAGACCGACAAGCTTTTGG
TCTGCTGGTTGGAAAGGTGAAATCTCCGGAAGAAGCATTGGAATACCCAT
TGACAAAGCTCCCATTCGCTCTTGCAGATCCTGATAACACCCTCAGACAA
GGAAACAAGGCTACACTACGAAATCATTTGAAGGATGAAGCAAAAGCTGA
GTGTAAACTACCAACCAAAGAATCTCCTGATTGGTTCATTGATGGCATGG
CAGGTTTGCAGCAGTTAAGGTGGCTGATACATGGGAAGATTAtgcaaaga
aatttttcaatttttgcaaacCAGGAAGCCCAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062523-exon-scaffold_368-1491911889:30543..31953 | TCONS_00062523-exon-scaffold_368-1491911889:30543..31953 | Clytia hemisphaerica | exon |
| TCONS_00062523-exon-scaffold_368-1510915933:30543..31953 | TCONS_00062523-exon-scaffold_368-1510915933:30543..31953 | Clytia hemisphaerica | exon |
| TCONS_00062523-exon-scaffold_368-1575043694:30543..31953 | TCONS_00062523-exon-scaffold_368-1575043694:30543..31953 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_368 | supercontig | scaffold_368:30543..31953 . |
Blast
The following BLAST results are available for this feature:
|
