TCONS_00062551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062551
Unique NameTCONS_00062551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062551 ID=TCONS_00062551|Name=TCONS_00062551|organism=Clytia hemisphaerica|type=transcript|length=559bp
GTCTTACTATTGGAAGCTTGACCACAAGATAtcaagaaacaaaagaaaga
taaaTTATTCTGATAAATTTGATCTCGATCCAAACCGAAAGCAAGTAAAC
AGAATAATCAACAAACAGAAGAAAATGCTTTCGCGTTGAAGTATGCTGGT
TCTGAAGATGACAACCATTCGTTATCGACAATCGGACGAGAATATAAAGA
TGATGACAGAGTACCGTTGCACACTTATCTCGATCTTGGTCTCGATGGAT
TAATAAGAGAGACAAATTTCACTCGTGAAGAAATACAGAGAATGTATCGT
GGCTTCAAGCAGgaaTGCCCAAGAGGTCTTCTGGACGAGGAGACATTTCT
GGCCATTTTGAACATGCTTTTCCCGGGAGGTGATCCAACGTTATATTGTA
GTCGAATATTCAACACTTTCGACCGAAGAAAGACTGGAAAGCTAACTTTT
GAGGTAAGCCACCGTCATTACGTATATACAGTgggcgctctctaattcga
cgttctactattcgataagctcccgttttcgatcaaattgaaagtcaccA
TCAAATTTC
Run BLAST on NCBI

transcript from alignment at scaffold_369:93575..101842+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062551 ID=TCONS_00062551|Name=TCONS_00062551|organism=Clytia hemisphaerica|type=transcript|length=8268bp|location=Sequence derived from alignment at scaffold_369:93575..101842+ (Clytia hemisphaerica)
GTCTTACTATTGGAAGCTTGACCACAAGATAtcaagaaacaaaagaaaga
taaaTTATTCTGATAAATTTGATCTCGGTAAGTTGTTAGTTCGTTCACTT
CTTCTGACAAATAGTTTGATTTGTGTCCATTCTAAGAGAAAATCTGAGTG
AACAATCATTTTACAGTAGTGTGGGTCACATCACTTCCAAGATTCTATTT
AAAAGAGGTACAAAGTTGAAAGACATTCTCTTTATAAAGAGAGAAAGAAA
TAAGTACAATCCTTTTGGTTCGCACTGAGCAGGGTATTTGGCACATCAAA
TTTGGCACATCAAATTTGGcttttaaaaacatatttctTTCCAACGAAGA
TGGATTTGCTATTCGGTACCGGAGGAGATGCCTCATCGTTCGCTTTGCTT
TTCAGATCCAAACCGAAAGCAAGTAAACAGAATAATCAACAAACAGAAGA
AAATGGTAAGAGAATAATTAATCGACCttctgcttcttcttcttcttctt
caatttctgtATGCTCCCTTTTATCCCCGCTTTTTGTCATGCTCTTtata
agttttttataagaataaaagaGAGAAGGCAacaaaaataatagaaattc
taCCTTGACTTGTCAGGCATTTCAATCAACTGGCTACTTTGTGCCATTTT
CAACTTCCTAATTTGATACATCTCGACGAAAGTGATCgtcgtgttttttt
ttcaccttgaaAGAAGCCTAAAAAAATGGCCAGGGTTGTATTAGGACCAA
TTAATCTCAGAACTAgaatttcttctcttaattaCGTTTCTCTAATCAAT
TCTATTTCATCTTTCGATCGTCTTTTCTTCCGATTTATCTTAAACAAGGC
TTATCATAATTTAGCTGACATTATAAAACATTTCAAGCGTAGAgaaatga
ttttcattttctacataaatcttgaaattttataaattgACTTGTATATT
AGCTGAATAAAAGGTCTTTATAAATTAATTAATGAAGTTCCAAATAGTGG
AAGAATAGATGGTTTTTAAAAAATGGAACCTTGGATTATTTCCATATTAA
AGAAGGCAGAGTTAAAAGCACAGCGTGTATAATCGTGTGATGtccaaaat
ttttgtcaaatttgtccaTTGCGTGATGAGAGAAAAATGCTGTAAAAAAA
TCTTGTACCGATCATTGAATTATTTAgggaaaaaaactaaaaaagttttt
ggaTGGAGGGTCGTTGTATAGATGTTAGCGATTGAACGGAATATTGAAAA
CTAAACTTGGGTTTATTTTACAACTGTTTATAATATACCATTTGAAAGCG
AATATTTTCTCTCatctttaaagttgaaaaatgaaactgaaaGTGGTCTT
CATTCTTTGTATTGTaaactttttgaagagaaaagtttgaaaaaaatatt
gtaaatcATGGAAAGTTTCagacaagaaataaaaagcTTATCTTCATGAT
TCATATGAATCTTGTCATTCATAGAGAAAAAAACGTCACTCGACGAAAAC
AACccgaaaagaaaaatctttaaaattgtgtgtgactggttgaaaaaatc
aaattttgtttttgtgaatttGAAAGAGGAAGGTTTTTATTACtgaagaa
atttgagaaaagatGTGATGAAAGTTCCTGTTAATGACTTCACTACTTGG
GATACCATTTTGTCTAATgctaaataataagaagatatGGGCAATATTGT
ACATGCATGTAAGCCATATTTCTTTAACCACCTGTTTTGTTGAAAACCTT
GTATTTTTTATCTTCACAGAAGTATACTACAGTAATTGTTCatcattcaa
aacaaaaaattgacaTGGCGCGAAGCGAGGATGCGAGAATGATCTtgatt
gatcaaattgccggcgCAAAACTGTAGTCTACTTTGATTTACCTTCCAGA
AGCAGCCTGTGgagagatttttaaaaatatgtgttcttatttttaaggAG
AACAAAATGTTATGACCTTCAATTTTCTTATACAATTGGTGTGTTCTGAT
TTTTAGAATcctttatcgcactatttgtctccctaaacttattaCTACCT
TATGGttttgatgtgttctaaaatctaagaaaaacattttgctaaGATAA
ACTTGtatgatatttgtttttctccaccAAAGaagtgttctgaaaatttc
tagggttacaagattacatcaattttctcttgattatacccatgtctcct
taaaagatgtgttctgaagctttctaggatTACcgagacaacaagaacac
gttagatgacATTGATGATACCattgtctcgtcagaacacatcattattt
ctagctgattaattttcgaagacctgatcagaacagatcaaaactTCTAG
CTGAAATAgcctctcagaacacatcggaaaaaaaggtcgcctcgcccgGC
TGCTTTCGACTTTCTGTAAAGATGGCGAATTGTTTTAACTTCAGTATTTT
ATATAATACCGGGTGGTCAAGAAATAACATGtccaaaattctttttaaaa
ttgtgcCAAAAGTTTGACCGCTACAGCCAGGAAAATTTGTATAGTTATAA
TTTGGACACCTGGGACTCTCAAACAAAAAATtgggtttgaaaaaacaaag
tCAGGGAAACGGCAGGTATTTTTGGTAATAGTATATATTTTCAATTGACG
ATATCGGCTTCGCataaaaactcagatttgacccccgagaattccccaca
atgctttgtgcggaaaagaTTTCACCGTAAACTTTTTCCcacgcaaagca
ttgtgggaaattttcggaggtcaaatctgagttttcacgttaagccgata
tcgtctattgcaaGAAAACGatgaaaaattgacgtcaaaaagacaaattt
TGATCCGACATGAAATGTCAATTAgcaaatgaaattgaaatcatCTATCT
GCAATCTGGATAACAactatcaaaaagaaaaaagaaaactagCGACGTTC
CAACGTTTGTGTTTAGCAAGCTGCTTAAGGGTTTTATCGGAGATATATAT
TTTGGGAGCCTTTGAAAGATTGAAATAACACGATACTACTGGATAACTTG
ACTGAATCATGGTCTTCCAAAGGACAGTGGACTTCAATGCTCAAATCCTC
CAGTTCTTCTACTGTGaataaaatcttccttttcgcTGAAGAATTGTACA
TCTTTTGTGCTCAAAGATAAAGAAGTATCATTCTCCCACTGAGTTCTCAG
TCTTTGAAGTCTTAGGAAATCTTATCCAGGATATCAAGATTTActataga
ttttattttaatgaaactGTGATCAGTTGAGTTTATTTAAAagaagattt
gaaaataatgttgcaaagtttgatattttcagaaagttACATTAATAGTC
TGATGGTTTTGGTTGTCGACCAGGAAAAAGATCATTGGTACTGATTGACA
TAGTTACATGAAGATCTTGATTCCTAAATTCTATGACTTCTAGTTCCTCA
GCTAGATctcaatatttgtcaaaatactTATAATATGTTGCAATGAGTTG
GACGTATCCTACTTTGTTttttgttaaaggttttgtttctcatcaatttt
aatttacaagcttttcacattgaattgacacaaatgtggagcaagattga
tcagaaagaggaaaagaaaaacacttttttgtttatatcagcataatata
acaataggaagacactgtccaGATAtcaaacatgtgtctgatatgaaaca
gggaacacttatgtaaaactaaaacctttaaCGTGCGGTAATAATACTTT
CAACCAAGCTTTGGATCGCTTCTTTAAAACGTTTGAAAGACCAagttgga
aaatattttcttttgcttgttttttcttctattaagccttctttattttc
aatacTTTCTTCCCGTTCTATGAGTAACTAGGAGAGGGCGTGTAATAGAA
CTCCAGGAAGCCTGAAACCTAATGACTTTTTTCTTTGGCTATCATTCGAT
TTGATTTTTACGGGTAAAGGGTTTTACATAGCTAGATGGACTTTCTCGAT
CTTATCCGAGCACTAGACTTATATAAATGTGATTAAAGGATTATTGCCAA
AAGGAAAAGAAGTTCTGAGATATTTTTTCATGGAACGTCGAAGCGAATGG
ACTGTTGTTTTATGATAACATAATTAACATGTTCTAAAATCGGCTAGTTc
caaacgcaggtcacaggtcatagaCACAGGTAACAGGccgtacaaactac
agaccagaaaCAGTAACGCACTCGTAATATGTAATTCATAACATGTTTCT
CTAAATATTATATGCAATGGAAATCGTTGTATACAAAATATTACTATTTA
GAAGATTTCAatgacaaatcatcaaccccaaatattgacaaagtgacact
taaataaatattaaaaaatataaaataccttcagtatgatatttttgaca
ataaaaaaatgtttttctgttGACATGTGACCTGTTGAcatgtgacctgt
gacctgcgttttcaactacacgttttttttttatataagaaacacgttta
taaggaacttgaggctgaaaatggtctgGGAAagaaggaattgttaagga
actgctcaggctgagaataaaatATCAAGTTAAAGAACAGCAAAAGTTCA
ATTTGAAATTGCACACATTTACAACAACCTAAATAAAAAGACGGTAAATA
TTGCTGAAACGCCTTTCAATAtgtcaaaaagacaaaaaatactGATAAAG
AAGCTACACACTTAGCAAATCCAAACTTCACAGCTACTAAGTAactaagg
aactcgataaggaactttgaagctgaaactctctggcaaaataaggaact
ccaggctcggagccaagttaaggttccttataaaaaaaacgtgtacccat
TCTAAAATCTATTCCTAAAGAAAAAGCagtcattttcaatcttcattttc
gttttttgagaatcttttCTTTAAATTCGTTCACTGAAAATTACCTTTCC
AACAAGGTATTACTTTTATAGAGCAGACTTTTTCATTACATTTTAAGAGC
ATTATAGTCTGAAAACAAAACACAACAACATTTATTCTCGTAAAAAAGGG
TATAAACTTTTTTACATGTTTGTttccttttccaaaaaaaacttctcttt
TCTGCAAGGCATAACTTTCTTGAATCATTTATGGCTGTACGTTTGTGAGG
GTGAATTTCCGAAGGCTCGATCACGAAGAATTAATcataataaatttgat
ttgataaaatttgatttttttatcaacaACAATAGGCttaattttgagaa
attaaTTTACACGTTTTATGAAGTATTAAAtatcatgttttgaaaattca
atcAGTTAAACTCTAGTCTTCGTGAATAAAAGTGAAGAAAAGACGTGAGT
TTGGGTTCgatgttttaattttctaaaaagtttgGTTACTTTGATTTTAC
TTTGAGAAAACTGAGCTTGGATTGGGCTTTTCTTGGGGGAGGgccaaaat
tcaaaaaggtTTATGTCGAAAATTCCGGAAATTTTGACCATAATTACCAA
AATCCGTAATCTCGCCCAATTCTGGCTAAATTCCTATCCAGTTGTCCGTC
TTCGAGAAGGGACTAAATTTCCGAAATTCATTTTGTTCGAAATCCGCTAC
TACTACGGGATGTTATTTAAAGTCTTATTACCACATGAGACAAAAAACTt
agctttgaaaaaaaaatacataataCTCATTCACTCTCAATGATGGCATC
AGCAGCAATCACGCAAATTATTCGTACCGTGAGTCGTGATTCGACAGGTT
CAAGTGGTTCCCGGAACTCAATGAACTTCTCTGGACGTTTTCAAAACCTC
GTCACTCTGATGGCACATCGTAAGTGTTTGAGATTCAAAGTACAGTTGTT
CAAAGACAGTGGTATATTAGCTCTTCACGATATGTTTAAGTCATTTTCTT
TAACGGAAACACCGGAAAAAACCGGGACTTGATCACTGGCTGTTATTAAA
ATAGAAACATAGCATGCAAAGTCCGGCTTTATCAGGGTGctttcgttgga
aagatattaccTCATTTTGACTTACGAATGTCATAGTTTACTAGTTTCTT
CTTGAGAAGTGTTAATTATCAGTGATAGGTCATAAAGTTACTAGGCTATG
TTGAGAATTTTACAGTGTGtggaattttgaatgaaaaaaaaacaattttg
aggGAGAGATctcgattttttttaattgtttgtaATATTCTCATCACCCT
TGTAGATGCTTTACGACCACTCCCTTACCTCGCTATTAAGTTTAGATTTA
TATAAAGTTTATACAGTACAGACAAGAAATTGACCTCTTGAAAGCTTCGA
TTTACTTGACATAAAAAAGTCCCGAAAAAGTTCGAGTTGTTTGTGACACA
GGAGTGTTATTATGCCCAGACcctaaagaatttttttcgaaattgagAAA
GCTTGTCGCTATGAAGTACAGCTGAAGTTAGAAACCAAAAATCCTCTTTA
CCTAAATCTGTTTAATTTTTTCTCCGGAACCCTTAAACCTTTGTTTAGGc
ccttttggaaatttttttccagaaatttGGGGTTTGAAAAACCTTTTGGA
AACAGGATTCGACACCGTAAGGTGCTTTGAtaagatgaaaaagaaacacT
GCAAATCTGGAaaggatttttgaaatattatggtttgaaaaatatttcga
gtgaaaaatgttgaaagtcGCCTTAATCTCCTGTTGTTTTGTAGCATATT
GCTGTTATGAAATATTCACTTAAATCCTCCACAAAACTTATTAgtttatt
ttcaaagtttttccaCATTCCTCTTGGACACAAAGGGAATGATTACAGTT
TTCTAATGTTCCTTGTTATTCCGACGAAGGACCTCGTTAGTGTTGTAGTC
TGTCTGCAGACTTTTTCTCAAGTGTTGTTAATAGACTTGATATGGCCTGT
TTTTCAGCTTTCGCGTTGAAGTATGCTGGTTCTGAAGATGACAACCATTC
GTTATCGACAATCGGACGAGAATATAAAGGTAAGATATTTTGATACTACA
CCCtcttctcatagacccactgggaccccttccctctgaaaaaattggcc
aacATATCGTCCCCGCTGAAAACTATACTCCAATTTTTTGTCGCCACTGA
AATAATCAAatgaaccaatcctcactgcaaatttcttttgctttttatcc
atcccactgaattttctgacttgataaaacaatggaatttaaatccccag
ccataaaaatatgttaataTAAATCCCTATCATGTTTCAGTCCgaaaaaa
attccaccggggccGTAAGAAGGGGATAGGATACTATATTTCGTTCTACC
CATTGCGTTTTAAACGACTGTTCATTCATATGTTGTTAAACCTTAGATCA
ATGCTACTAAAGTGTATTTGCTAAGGGTGCAATATTATTGTTAAAATATG
GAAATcggaattcgaatttttttgataatggAGCAAGTTGGATTCTCTAA
CCATGCCCCATTCTATTTTTCTTAAACgcttcgaaaaaaaagtttagaaa
ttacaCGAAGGGGCGGAACCTCGTGCGTTCTTCCgttattttcatcttta
ttttcttgAGATGCCCAAAATTGAATCCGGCATGACTGTTTTACgttata
aattttttgatttgattagtTTCCATTCCCCTTTCTTGATGCTTCAGATG
ATGACAGAGTACCATTGCACACTTATCTCGATCTTGNCTTTCTTGACGCT
TCAGATGATGACAGAGTACCGTTGCACACTTATCTCGATCTTGGTCTCGA
TGGATTAATAAGAGAGACAAATTTCACTCGTGAAGAAATACAGAGAATGT
ATCGTGGCTTCAAGCAGGTAGActtattaaataataaagtttcTCTCAAA
ACTGAGTATAGTAGTCTTTTATTCCGATATGCATGTTTTATTGGTAGTCG
AAGCATTTGTTGAAAGAatggaggttcgagttaaagagacttcaCTGTAT
TTGATCTTAAAGCCGAACTGAGAGCTCTCTGAAAAATTTAGTTTGATTac
cgataattttttttttctcaggaaTGCCCAAGAGGTCTTCTGGACGAGGA
GACATTTCTGGCCATTTTGAACATGCTTTTCCCGGGAGGTGATCCAACGT
TATATTGTAGTCGAATATTCAACACTTTCGACCGAAGAAAGACTGGAAAG
CTAACTTTTGAGGTAAGCCACCGTCATTACGTATATACAGTgggcgctct
ctaattcgacgttctactattcgataagctcccgttttcgatcaaattga
aagtcaccATCAAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039189XLOC_039189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062551-exon-scaffold_369-1491911889:93575..93651TCONS_00062551-exon-scaffold_369-1491911889:93575..93651Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1510915933:93575..93651TCONS_00062551-exon-scaffold_369-1510915933:93575..93651Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1575043694:93575..93651TCONS_00062551-exon-scaffold_369-1575043694:93575..93651Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1491911889:93980..94029TCONS_00062551-exon-scaffold_369-1491911889:93980..94029Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1510915933:93980..94029TCONS_00062551-exon-scaffold_369-1510915933:93980..94029Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1575043694:93980..94029TCONS_00062551-exon-scaffold_369-1575043694:93980..94029Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1491911889:100482..100553TCONS_00062551-exon-scaffold_369-1491911889:100482..100553Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1510915933:100482..100553TCONS_00062551-exon-scaffold_369-1510915933:100482..100553Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1575043694:100482..100553TCONS_00062551-exon-scaffold_369-1575043694:100482..100553Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1491911889:101279..101391TCONS_00062551-exon-scaffold_369-1491911889:101279..101391Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1510915933:101279..101391TCONS_00062551-exon-scaffold_369-1510915933:101279..101391Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1575043694:101279..101391TCONS_00062551-exon-scaffold_369-1575043694:101279..101391Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1491911889:101596..101842TCONS_00062551-exon-scaffold_369-1491911889:101596..101842Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1510915933:101596..101842TCONS_00062551-exon-scaffold_369-1510915933:101596..101842Clytia hemisphaericaexon
TCONS_00062551-exon-scaffold_369-1575043694:101596..101842TCONS_00062551-exon-scaffold_369-1575043694:101596..101842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:93575..101842 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.765272	0.391375	1.37725	0	0	0	0	1.38857	1.18643	1.56533	0	2.58519	0.622664	1.18023	0	0	2.24518	1.72631	1.16606	0	3.31155	2.96347	1.39376	0	3.09317	2.98236	0	0	0	0.229254
Blast
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BLAST of TCONS_00062551 vs. Swiss-Prot (Human)
Match: KCIP1 (Kv channel-interacting protein 1 OS=Homo sapiens GN=KCNIP1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.438e-18
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:  238 GLDGLIRETNFTREEIQRMYRGFKQECPRGLLDEETFLAILNMLFPGGDPTLYCSRIFNTFDRRKTGKLTFE 453
            GL+ L  +TNFT+ E+Q +YRGFK ECP G+++E+TF  I    FP GD + Y   +FN FD  +TG + FE
Sbjct:   49 GLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEDTFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFE 120
The following BLAST results are available for this feature:
BLAST of TCONS_00062551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCIP11.438e-1848.61Kv channel-interacting protein 1 OS=Homo sapiens G... [more]
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