TCONS_00062565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062565
Unique NameTCONS_00062565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062565 ID=TCONS_00062565|Name=TCONS_00062565|organism=Clytia hemisphaerica|type=transcript|length=1461bp
CTTTAATCTAATCCATCTAAATCTATTTTTTGTCTATATAATGAATATGA
GATTGTGACTGTTAAACCTTTATTGAAGTATTTTAATTAATTTCGCGACT
TCTATGAGTAGTATTTGATTTGATATTCGATATTGTCTAAGCTTGTGTTT
TTGTGATCTGAATTTATATTTTGAAGGGCGAGTCAGGCTTCAAGTTCAAT
TGAGtttaacttttttcaatatGGCAGAGCAAGAAATTACCGCAACAGAA
ATCAAGGATGAAACTCTTGAAGAATATTACGAGCAATCCATCGTTCCACC
ATTCCACAGATGCTATCACATCAAGCCTTTTAATGTTGTTTTCTCAAAGA
ATTACCCCAGACATCATCAGTttattcaagattttgaagtttttaaagaT
GATGTTTTCGTATCCACTTTTCCAAAATCTGGAACTCGTTGGCTTCAAGA
ATTAATTTGGTGTATGCGTCATAAAAATGGAATCGAAAAAGCGAAATCCA
AAGATCTTGATGAGAGGGTACCCCATTTTGAACTCCCTTTTGTAATGGAC
AGCAAGTCTATTGAAGAGGATAAATCATACCTCCTTAATGGAATAAACAA
CCTCTCTCGACCAAGAACGTTGAAAACTCATCTACCTTTTCCGATGCTAC
CGAAAGGAGTACAAGAGAAGGGTGCtaagATCGTATATTGTTATCGCAAC
CCTAGAGATACAATGTTGTCATTGTTTAACTTCATGAAACTCATACAAAA
TTACACTGGCACAATGGAATTGTATTCCGATGTCTTCCTGAAAGGCCTCA
CACCTTATTACTTACCCTACTTTTCTCAAGTTTTGGGATATTGGAATCGA
CGTTCCCAAGAGAATCTCTTGGTACTATGTTATGAAGAAATGCAGAAAGA
TTTGCCATCAGTTGTTCgaaaaattgcttcatttttggaCATTGAAATGA
CAGATGAAGAAGTTTTGAAATTATGTCATCATACTTCTTTTgatcaaatg
aaaaagaacCCTCATGTCAACGTATTGAAGGGACTAAAAATGTACGACGG
ACAATATTTGAACAAAGGAAAAGTTGGACAATGGAAAGATCACTTCAGTG
AAGAATTGATCCAAAAATTCGAACTATTTGAAAGAGAAGGATTAAAGGGA
ACTGATCTGGAGTTTGTTTTCGAATTATAAACCGGCAAATCGGCAGTTTT
TTAACAAGAGCagcgtcaaaatttgaaattacgaTTATCTatgatgattc
tatcaaaagttattggaatttcaattttcatgacgtcatcaaaatagcgc
aaaattgaggatttttgcgaattacgcaaaatatcaaaatgaaaaaaaca
tctgcctagactgaatcttattctaCTTAGTTCTACCAACgacttaataa
aatagatagaccaagaacttcatacaatggctcttagaaatcttttgttt
tctattcattt
Run BLAST on NCBI

protein sequence of TCONS_00062565-protein

>TCONS_00062565-protein ID=TCONS_00062565-protein|Name=TCONS_00062565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MAEQEITATEIKDETLEEYYEQSIVPPFHRCYHIKPFNVVFSKNYPRHHQ
FIQDFEVFKDDVFVSTFPKSGTRWLQELIWCMRHKNGIEKAKSKDLDERV
PHFELPFVMDSKSIEEDKSYLLNGINNLSRPRTLKTHLPFPMLPKGVQEK
GAKIVYCYRNPRDTMLSLFNFMKLIQNYTGTMELYSDVFLKGLTPYYLPY
FSQVLGYWNRRSQENLLVLCYEEMQKDLPSVVRKIASFLDIEMTDEEVLK
LCHHTSFDQMKKNPHVNVLKGLKMYDGQYLNKGKVGQWKDHFSEELIQKF
ELFEREGLKGTDLEFVFEL
Run BLAST on NCBI

transcript from alignment at scaffold_369:327398..330965+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062565 ID=TCONS_00062565|Name=TCONS_00062565|organism=Clytia hemisphaerica|type=transcript|length=3568bp|location=Sequence derived from alignment at scaffold_369:327398..330965+ (Clytia hemisphaerica)
CTTTAATCTAATCCATCTAAATCTATTTTTTGTCTATATAATGAATATGA GATTGTGACTGTTAAACCTTTATTGAAGTATTTTAATTAATTTCGCGACT TCTATGAGTAGTATTTGATTTGATATTCGATATTGTCTAAGCTTGTGTTT TTGTGATCTGAATTTATATTTTGAAGGGCGAGTCAGGCTTCAAGTTCAAT TGAGtttaacttttttcaatatGGCAGAGCAAGAAATTACCGCAACAGAA ATCAAGGATGAAACTCTTGAAGAATATTACGAGCAATCCATCGTTCCACC ATTCCACAGATGCTATCACATCAAGCCTTTTAATGTTGTTTTCTCAAAGA ATTACCCCAGACATCATCAGTttattcaagattttgaagtttttaaagaT GATGTTTTCGTATCCACTTTTCCAAAATCTGGTAATTTTTGTGAACTGCC AGAATTCCTATGAATCGTTTTGTTTTAAGGCATGCGGAGGTTTATTTTGT CCTACTATCAACCATTATTTTCTTTCCATGTATTAGCTTTCAAATCCATA CATTAGGTCACAGTAGGTCAATGAAATACAGTctacgttcgttcgttcgt tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc gttcgttcgttcgttcgttcgttcgttcgttcgttcttgatattcatgat gtaatctttgcgCCTAAACAACTTTGCCGCCattatttgtggtaaaaaat ttgGCCAGCTAACctattttgtattgaaaccGGGGGTTCACGAAAAAGAA AGCCTAATAATTTGTGATGTAGTATGATAGAATTatatatctttttaaaa tctattGTAGATAATTTAATGAAAGagttttttcttcgttttggAGTATT TGGACTTCTGCAttaatcttttcctttttctttcggGGGTCCTTGCGTTG AAAACACCAAAAATGGCGGCCAAATGTTATGACTTGAAGTGTCAATCAAC GAAAATATTACATCATGAACATCGtgaattcattcattcattcattctca AAATTTGATAATACTTCATCATCACTTTCTACACGCATTTTTGTTTTCAG GAACTCGTTGGCTTCAAGAATTAATTTGGTGTATGCGTCATAAAAATGGA ATCGAAAAAGCGAAATCCAAAGATCTTGATGAGAGGGTACCCCATTTTGA GTAAGCCAGATTTCATAATATTATGATAAGACTACAATTATACAACATCA TTTCTAGCATTGATTTCAAACCCCCAAAGAGACTATAGATTTGAAACTCT tgaatgggaaatgaagccacttatctCCCACAAACGCCAGATTAAGAGTA AAACCCATcggtaaatttcaaaaataattgccgcttaaaacaaagaaagg gcTTGATTCAATCGTCATTCTAAATGCTGTGAAAATCTAAAGGCTTCACT TTCTCTTGCTccagaaaggttgaagattcctctctggCCTCTTTAGATTC AATGATTTCAAGACACCAAAATTATTATCAGTGGGTCATTACTTCCGCAG AGCTTTTTGGAATGATTCAAGTTTTCTGACGTTACTGCTTTTTTTCATTT AGACTCCCTTTTGTAATGGACAGCAAGTCTATTGAAGAGGATAAATCATA CCTCCTTAATGGAATAAACAACCTCTCTCGACCAAGAACGTTGAAAACTC ATCTACCTTTTCCGATGCTACCGAAAGGAGTACAAGAGAAGGGTGCtaag gtaaattttattgacttatcaaattccaaacattttccttgaaaaaatcA GCTAAGGCAGGCTCCAAAATTCATTTCTTTCGTGGTTTTAAGCTCAATAA TCCTTGCAATCTTTTAAACATGTTTGCTTAATGCACGTGTCGAATTCCCT TAGCCATGCCATCTCTGAAATCCGAGTCCGAGTCGTGTTCTTAAGTTTTC TTTAAGccgatttcttataaaaagaggcGTGTATTGACAATTCATTGATT GGAATAATTTTGTTTCATCTTCAGATCGTATATTGTTATCGCAACCCTAG AGATACAATGTTGTCATTGTTTAACTTCATGAAACTCATACAAAATTACA CTGGCACAATGGAATTGTATTCCGATGTCTTCCTGAAAGGCCTCACACCT TATTACTTACCCTACTTTTCTCAAGTTTTGGGATATTGGAATCGACGTTC CCAAGAGAATCTCTTGGTACTATGTTATGAAGAAATGCAGAAAGATTTGC CATCAGTTGTTCgaaaaattgcttcatttttggaCATTGAAATGACAGAT GAAGAAGTTTTGAAATTATGTCATCATACTTCTTTTgatcaaatgaaaaa gaacCCTCATGTCAACGTATTGAAGGTATTTTTTTGTAAAGGCGAATTGT TTTGTGTATTTATATAGcagattttctaaactttttaaacgcattactct cgggtacctaatagccggggggttggaataagcaggggggttggaaaaaa tctcaaaatttaataagcgggggggttggaataaaaatgtcatggatgga aaatgtttgaaaaggaggctaatacagcagaattaagacaaaaaagggaa cttttcccaaaaattaataagcgggggggggggttggaataagaatgtcc tggggggaaaattttcgaaaaattaaNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaattaattagca gggggggacggctattaggtacccgagagtagttgcATATTCCCGTAGTT TGAATCGcagactttaaaaaaaaatttgtctctaaaaatatttttcgcta gaggatgaacAGAAGCCTAACTTTCCCGGGGCCCTTAGAGACAGTCATGT CCTATAGAATTATAGACTTGGTATAAACCTACTTTGGCCCAGAAGATTTT CCTTTTAgatcacacccctgtctcggtgACTTAGTAGTGGGGTTAAAACG AAAGGGACTTATTCAGATAGCAATGGTAAGATCGTATCGTGTAAAGAAAC ATTAGAAACATTTAGAAGTTTCTTTTCTTAATTCTAGGGACTAAAAATGT ACGACGGACAATATTTGAACAAAGGAAAAGTTGGACAATGGAAAGATCAC TTCAGTGAAGAATTGATCCAAAAATTCGAACTATTTGAAAGAGAAGGATT AAAGGGAACTGATCTGGAGTTTGTTTTCGAATTATAAACCGGCAAATCGG CAGTTTTTTAACAAGAGCagcgtcaaaatttgaaattacgaTTATCTatg atgattctatcaaaagttattggaatttcaattttcatgacgtcatcaaa atagcgcaaaattgaggatttttgcgaattacgcaaaatatcaaaatgaa aaaaacatctgcctagactgaatcttattctaCTTAGTTCTACCAACgac ttaataaaatagatagaccaagaacttcatacaatggctcttagaaatct tttgttttctattcattt

Coding sequence (CDS) from alignment at scaffold_369:327398..330965+

>TCONS_00062565 ID=TCONS_00062565|Name=TCONS_00062565|organism=Clytia hemisphaerica|type=CDS|length=4800bp|location=Sequence derived from alignment at scaffold_369:327398..330965+ (Clytia hemisphaerica)
atGGCAGAGCAAGAAATTACCGCAACAGAAATCAAGGATGAAACTCTTGA
AGAATATTACGAGCAATCCATCGTTCCACCATTCCACAGATGCTATCACA
TCAAGCCTTTTAATGTTGTTTTCTCAAAGAATTACCCCAGACATCATCAG
TttattcaagattttgaagtttttaaagaTGATGTTTTCGTATCCACTTT
TCCAAAATCTGGAACTCGTTGGCTTCAAGAATTAATTTGGTGTATGCGTC
ATAAAAATGGAATCGAAAAAGCGAAATCCAAAGATCTTGATGAGAGGGTA
CCCCATTTTGAACTCCCTTTTGTAATGGACAGCAAGTCTATTGAAGAGGA
TAAATCATACCTCCTTAATGGAATAAACAACCTCTCTCGACCAAGAACGT
TGAAAACTCATCTACCTTTTCCGATGCTACCGAAAGGAGTACAAGAGAAG
GGTGCtaagATCGTATATTGTTATCGCAACCCTAGAGATACAATGTTGTC
ATTGTTTAACTTCATGAAACTCATACAAAATTACACTGGCACAATGGAAT
TGTATTCCGATGTCTTCCTGAAAGGCCTCACACCTTATTACTTACCCTAC
TTTTCTCAAGTTTTGGGATATTGGAATCGACGTTCCCAAGAGAATCTCTT
GGTACTATGTTATGAAGAAATGCAGAAAGATTTGCCATCAGTTGTTCgaa
aaattgcttcatttttggaCATTGAAATGACAGATGAAGAAGTTTTGAAA
TTATGTCATCATACTTCTTTTgatcaaatgaaaaagaacCCTCATGTCAA
CGTATTGAAGGGACTAAAAATGTACGACGGACAATATTTGAACAAAGGAA
AAGTTGGACAATGGAAAGATCACTTCAGTGAAGAATTGATCCAAAAATTC
GAACTATTTGAAAGAGAAGGATTAAAGGGAACTGATCTGGAGTTTGTTTT
CGAATTATAAatGGCAGAGCAAGAAATTACCGCAACAGAAATCAAGGATG
AAACTCTTGAAGAATATTACGAGCAATCCATCGTTCCACCATTCCACAGA
TGCTATCACATCAAGCCTTTTAATGTTGTTTTCTCAAAGAATTACCCCAG
ACATCATCAGTttattcaagattttgaagtttttaaagaTGATGTTTTCG
TATCCACTTTTCCAAAATCTGGAACTCGTTGGCTTCAAGAATTAATTTGG
TGTATGCGTCATAAAAATGGAATCGAAAAAGCGAAATCCAAAGATCTTGA
TGAGAGGGTACCCCATTTTGAACTCCCTTTTGTAATGGACAGCAAGTCTA
TTGAAGAGGATAAATCATACCTCCTTAATGGAATAAACAACCTCTCTCGA
CCAAGAACGTTGAAAACTCATCTACCTTTTCCGATGCTACCGAAAGGAGT
ACAAGAGAAGGGTGCtaagATCGTATATTGTTATCGCAACCCTAGAGATA
CAATGTTGTCATTGTTTAACTTCATGAAACTCATACAAAATTACACTGGC
ACAATGGAATTGTATTCCGATGTCTTCCTGAAAGGCCTCACACCTTATTA
CTTACCCTACTTTTCTCAAGTTTTGGGATATTGGAATCGACGTTCCCAAG
AGAATCTCTTGGTACTATGTTATGAAGAAATGCAGAAAGATTTGCCATCA
GTTGTTCgaaaaattgcttcatttttggaCATTGAAATGACAGATGAAGA
AGTTTTGAAATTATGTCATCATACTTCTTTTgatcaaatgaaaaagaacC
CTCATGTCAACGTATTGAAGGGACTAAAAATGTACGACGGACAATATTTG
AACAAAGGAAAAGTTGGACAATGGAAAGATCACTTCAGTGAAGAATTGAT
CCAAAAATTCGAACTATTTGAAAGAGAAGGATTAAAGGGAACTGATCTGG
AGTTTGTTTTCGAATTATAAatGGCAGAGCAAGAAATTACCGCAACAGAA
ATCAAGGATGAAACTCTTGAAGAATATTACGAGCAATCCATCGTTCCACC
ATTCCACAGATGCTATCACATCAAGCCTTTTAATGTTGTTTTCTCAAAGA
ATTACCCCAGACATCATCAGTttattcaagattttgaagtttttaaagaT
GATGTTTTCGTATCCACTTTTCCAAAATCTGGAACTCGTTGGCTTCAAGA
ATTAATTTGGTGTATGCGTCATAAAAATGGAATCGAAAAAGCGAAATCCA
AAGATCTTGATGAGAGGGTACCCCATTTTGAACTCCCTTTTGTAATGGAC
AGCAAGTCTATTGAAGAGGATAAATCATACCTCCTTAATGGAATAAACAA
CCTCTCTCGACCAAGAACGTTGAAAACTCATCTACCTTTTCCGATGCTAC
CGAAAGGAGTACAAGAGAAGGGTGCtaagATCGTATATTGTTATCGCAAC
CCTAGAGATACAATGTTGTCATTGTTTAACTTCATGAAACTCATACAAAA
TTACACTGGCACAATGGAATTGTATTCCGATGTCTTCCTGAAAGGCCTCA
CACCTTATTACTTACCCTACTTTTCTCAAGTTTTGGGATATTGGAATCGA
CGTTCCCAAGAGAATCTCTTGGTACTATGTTATGAAGAAATGCAGAAAGA
TTTGCCATCAGTTGTTCgaaaaattgcttcatttttggaCATTGAAATGA
CAGATGAAGAAGTTTTGAAATTATGTCATCATACTTCTTTTgatcaaatg
aaaaagaacCCTCATGTCAACGTATTGAAGGGACTAAAAATGTACGACGG
ACAATATTTGAACAAAGGAAAAGTTGGACAATGGAAAGATCACTTCAGTG
AAGAATTGATCCAAAAATTCGAACTATTTGAAAGAGAAGGATTAAAGGGA
ACTGATCTGGAGTTTGTTTTCGAATTATAAatGGCAGAGCAAGAAATTAC
CGCAACAGAAATCAAGGATGAAACTCTTGAAGAATATTACGAGCAATCCA
TCGTTCCACCATTCCACAGATGCTATCACATCAAGCCTTTTAATGTTGTT
TTCTCAAAGAATTACCCCAGACATCATCAGTttattcaagattttgaagt
ttttaaagaTGATGTTTTCGTATCCACTTTTCCAAAATCTGGAACTCGTT
GGCTTCAAGAATTAATTTGGTGTATGCGTCATAAAAATGGAATCGAAAAA
GCGAAATCCAAAGATCTTGATGAGAGGGTACCCCATTTTGAACTCCCTTT
TGTAATGGACAGCAAGTCTATTGAAGAGGATAAATCATACCTCCTTAATG
GAATAAACAACCTCTCTCGACCAAGAACGTTGAAAACTCATCTACCTTTT
CCGATGCTACCGAAAGGAGTACAAGAGAAGGGTGCtaagATCGTATATTG
TTATCGCAACCCTAGAGATACAATGTTGTCATTGTTTAACTTCATGAAAC
TCATACAAAATTACACTGGCACAATGGAATTGTATTCCGATGTCTTCCTG
AAAGGCCTCACACCTTATTACTTACCCTACTTTTCTCAAGTTTTGGGATA
TTGGAATCGACGTTCCCAAGAGAATCTCTTGGTACTATGTTATGAAGAAA
TGCAGAAAGATTTGCCATCAGTTGTTCgaaaaattgcttcatttttggaC
ATTGAAATGACAGATGAAGAAGTTTTGAAATTATGTCATCATACTTCTTT
TgatcaaatgaaaaagaacCCTCATGTCAACGTATTGAAGGGACTAAAAA
TGTACGACGGACAATATTTGAACAAAGGAAAAGTTGGACAATGGAAAGAT
CACTTCAGTGAAGAATTGATCCAAAAATTCGAACTATTTGAAAGAGAAGG
ATTAAAGGGAACTGATCTGGAGTTTGTTTTCGAATTATAAatGGCAGAGC
AAGAAATTACCGCAACAGAAATCAAGGATGAAACTCTTGAAGAATATTAC
GAGCAATCCATCGTTCCACCATTCCACAGATGCTATCACATCAAGCCTTT
TAATGTTGTTTTCTCAAAGAATTACCCCAGACATCATCAGTttattcaag
attttgaagtttttaaagaTGATGTTTTCGTATCCACTTTTCCAAAATCT
GGAACTCGTTGGCTTCAAGAATTAATTTGGTGTATGCGTCATAAAAATGG
AATCGAAAAAGCGAAATCCAAAGATCTTGATGAGAGGGTACCCCATTTTG
AACTCCCTTTTGTAATGGACAGCAAGTCTATTGAAGAGGATAAATCATAC
CTCCTTAATGGAATAAACAACCTCTCTCGACCAAGAACGTTGAAAACTCA
TCTACCTTTTCCGATGCTACCGAAAGGAGTACAAGAGAAGGGTGCtaagA
TCGTATATTGTTATCGCAACCCTAGAGATACAATGTTGTCATTGTTTAAC
TTCATGAAACTCATACAAAATTACACTGGCACAATGGAATTGTATTCCGA
TGTCTTCCTGAAAGGCCTCACACCTTATTACTTACCCTACTTTTCTCAAG
TTTTGGGATATTGGAATCGACGTTCCCAAGAGAATCTCTTGGTACTATGT
TATGAAGAAATGCAGAAAGATTTGCCATCAGTTGTTCgaaaaattgcttc
atttttggaCATTGAAATGACAGATGAAGAAGTTTTGAAATTATGTCATC
ATACTTCTTTTgatcaaatgaaaaagaacCCTCATGTCAACGTATTGAAG
GGACTAAAAATGTACGACGGACAATATTTGAACAAAGGAAAAGTTGGACA
ATGGAAAGATCACTTCAGTGAAGAATTGATCCAAAAATTCGAACTATTTG
AAAGAGAAGGATTAAAGGGAACTGATCTGGAGTTTGTTTTCGAATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039197XLOC_039197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062565-exon-scaffold_369-1491911889:327398..327828TCONS_00062565-exon-scaffold_369-1491911889:327398..327828Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1510915933:327398..327828TCONS_00062565-exon-scaffold_369-1510915933:327398..327828Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1575043694:327398..327828TCONS_00062565-exon-scaffold_369-1575043694:327398..327828Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1491911889:328498..328597TCONS_00062565-exon-scaffold_369-1491911889:328498..328597Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1510915933:328498..328597TCONS_00062565-exon-scaffold_369-1510915933:328498..328597Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1575043694:328498..328597TCONS_00062565-exon-scaffold_369-1575043694:328498..328597Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1491911889:329000..329147TCONS_00062565-exon-scaffold_369-1491911889:329000..329147Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1510915933:329000..329147TCONS_00062565-exon-scaffold_369-1510915933:329000..329147Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1575043694:329000..329147TCONS_00062565-exon-scaffold_369-1575043694:329000..329147Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1491911889:329422..329772TCONS_00062565-exon-scaffold_369-1491911889:329422..329772Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1510915933:329422..329772TCONS_00062565-exon-scaffold_369-1510915933:329422..329772Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1575043694:329422..329772TCONS_00062565-exon-scaffold_369-1575043694:329422..329772Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1491911889:330535..330965TCONS_00062565-exon-scaffold_369-1491911889:330535..330965Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1510915933:330535..330965TCONS_00062565-exon-scaffold_369-1510915933:330535..330965Clytia hemisphaericaexon
TCONS_00062565-exon-scaffold_369-1575043694:330535..330965TCONS_00062565-exon-scaffold_369-1575043694:330535..330965Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062565-proteinTCONS_00062565-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:327398..330965 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0629898 0.236037 0.200322 0.260207 0.658336 0.246916 0.367628 0.517368 0.290637 0.510675 0.14616 0.26984 0.171905 0.195717 0.0967482 0.173477 8.0974 8.94241 0.361472 0.350989 13.3707 12.899 4.09694 6.65342 6.19422 8.4988 9.00032 5.27121 0.162522 0.194438
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000863Sulfotransferase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008146sulfotransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008146 sulfotransferase activity
Blast
BLAST of TCONS_00062565 vs. Swiss-Prot (Human)
Match: ST1C4 (Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 8.911e-43
Identity = 87/274 (31.75%), Postives = 150/274 (54.74%), Query Frame = 2
Query:  374 IQDFEVFKDDVFVSTFPKSGTRWLQELIWCMRHKNGIEKAKSKDLDERVPHFELPFVMDSKSIEEDKSYLLNGINNLSRPRTLKTHLPFPMLPKGVQEKGAKIVYCYRNPRDTMLSLFNFMKLIQN--YTGTMELYSDVFLKGLTPYYLPYFSQVLGYWNRRSQENLLVLCYEEMQKDLPSVVRKIASFLDIEMTDEEVLKLCHHTSFDQMKKNPHVNV----LKGLKMYDGQYLNKGKVGQWKDHFSEELIQKFELFEREGLKGTDLEFVFEL 1177
            I +F+   DD+ +ST+PK+GT W QE++  ++++  +EK+K     +R P  E+        +E+         + +  PR LKTHLPF +LP  + EK  KI+Y  RNP+D M+S ++F ++ +     GT E Y + FL G    +  +   V G+W  + +  +L L YE+M+K+    ++K+A F+  ++ D+ + K+ H+TSFD MK+NP  N      + +      ++ KG VG WK HF+    ++F+   ++ +  T L F F+ 
Sbjct:   38 IWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPSLGSGLEQ--------AHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFLAGKV-CWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSISPFMRKGAVGDWKKHFTVAQNERFDEDYKKKMTDTRLTFHFQF 302          
The following BLAST results are available for this feature:
BLAST of TCONS_00062565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1C48.911e-4331.75Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE... [more]
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