TCONS_00062566 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062566
Unique Name	TCONS_00062566
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	643

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_369:339933..346171+

transcript sequence

>TCONS_00062566 ID=TCONS_00062566|Name=TCONS_00062566|organism=Clytia hemisphaerica|type=transcript|length=643bp
aatgtttaagACAATGTTGGAAATTGCTGCGCAAACCATtcaacaagaaa
gttcaaatgtttgaagaacGATGTTTGATGGTTTGCTCTCAGCTTTACAA
TACCGTACAATGACTTCTCATGCTATTTTTAGCTATCAATTCAATTGGAC
GCAATCGTGAATGGCACCTGGGCGCCATGGGGTGACTGGGGTGGTTGTGA
CAAACCATGTGGTACCGGTTTCCGATACAGATGGAGAAATTGTACCAATC
CTGCACCTCAGAACGGCGGATTGGATTGTGCAGGAGATAACAGAGCACAT
AAGACGTGTAATACAAACATATGTGAGCGTGAAAGAGGAGATCTATGGAA
TACATATAGCAGGTGTAAACGAGAAATAGGGTATTGTCTTGGACCAAATG
GACGTAGGCCATCCAGGAGTGGTCTTTGGAAGCTTGTGAATAAAGTGAGA
GGAAAAGTAGATTGGGACAGAGAAATGTGTATGTATAAGTGTCTTCAAAG
ACGTGGTGCTACAGCCTGCGAAATGTACTATAACGATTGGGGATGCTATG
TTCATACTGCACCTGTGACCAGAGGAGACGGTTACACAAATAATTATTGT
TGGGTTTTATCTAAGTGTAAAActGATGGTGTCTGGTCTCAAN

Run BLAST on NCBI

transcript from alignment at scaffold_369:339933..346171+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062566 ID=TCONS_00062566|Name=TCONS_00062566|organism=Clytia hemisphaerica|type=transcript|length=6239bp|location=Sequence derived from alignment at scaffold_369:339933..346171+ (Clytia hemisphaerica)
aatgtttaagACAATGTTGGAAATTGCTGCGCAAACCATtcaacaagaaa
gttcaaatgtttgaagaacGATGTTTGATGGTTTGCTCTCAGCTTTACAA
TACCGTACAATGACTTCTCATGCTATTTTTAGCTATCAATTCAATTGGGT
GAGCTTCATTCTTTCTTTTCTAAATGCTTCTTTAAAGCTTTTCCaatgaa
actttttttaattgctAGAGGAGGAGTTCTTCCTTATGGACTATTTTTTT
TGCGAGCGAAGAtctaaattaaatttaaattagaAGAAATAAAaccaggc
tcggatacagagggaggctataagcaatggaggagagtgcactttattat
cgtattaccttaaaTGGAAACTAATTACCCTCCATGAATAAGTTAGCCTA
CCgtcctcctgtatccgaccctgtaAAACTATTGGAtaaatttccatttt
tccaattAGTGTTACAAAATTGTACCCTAACTGCTGTGGATGATctttat
ttccaattttttctctATAAGCCACTAAAAGATACCCCTTTAATATACTC
CGAAGGACTCCGAACTTGCTTTTCTCTGAAACGCAAAAGGATTTCGTTCA
ATTACTGTTAAAGTCGAAATTCACTGGGTTCCCCACTAGCGTCGGGACAA
AATTTATCTACGGAAACAAAAATTAACAAGAGACTATTTTCCTAGTCTAC
TTATTACGACCGCCAGATTGagtatacagttgacgctctctaattcgatc
ttcaaggggaattggattatcatcgaataagggagcttatcgaataaggg
agcgtcgtttatgagagtttcttgttgacagggactttaaatttcatcga
ataagggagcctatcgaacagtagaacgtcgaattagagagcgtgaACTG
TATTAtaattgcaaaaaaattgacgtcgTAAGTAGACTTTTTTTGgttag
gcgaggccaatttaattttttgttttacggatcaagctacccaaaaaaga
gggtcggtcagtcggcgaaaaaataaaaataaaagtagaattgcATCTAT
AAAATCTCCTGAAAGTAAAAAGCCCtgaaaaggcagcaaaaactatcACA
TCTTGACAAAAgtgcaaaatagaaaataaaaagacacagaATCCTTGAAt
ttatggataaaatgaaaaattgaacattacATTCTCAAAACCATGGAAAA
ACTaccaacattttgaaattttggcattctgtaaagcaatgaaaataata
atataCAGTTGAACTCACGTAATTCGAAATCTCAAGGGACCGAACTAGAT
AAGTTTTCGTATTTTTGACCTAATTCGAAAAAAGTCTTTCCAAGGTTTAC
TTTTGAGCTTGATGGATACGACTTTATTGGACATACCATCCTCCAAGTCA
CGGAGAGCTTCGtatttcgtttttaaagtgacttcttttttatgttttct
ttttctcatcTTGTCTTGATAAGAAATGGAAGTAGTCCGGCGGCGAAAAG
GGCTTTTTTGCATCAACCCttacaagtagtaaatatgggtttttatttca
ttttctcattatatggtcccttgggaccccaaaaccggtttttgccaagc
tggcaaagctggggaaaattttttatgNtatggtcccttgggaccccaaa
accggtttttgccaagctggcaaagctggggaaaattttgcctgggggtc
cttagaaagtcaatttttgaagttctcatttagctataactgattgtgcc
atcagatagagcttgaagagtatatttccaaaatggggtcatttgtcaca
TTTGGTGGACTTAGTCTCCCGGAATTggctgatacgtcttcaaaaatgca
atatttcatgctgacgtcagcatttttgagagaattttcagcgaaagata
ccacttttaacagatgcgtctcgaagagttctatcgattagaggggtcat
ttatagggtttcctaggaTAGATaatgagatatttgagtttgaaattttg
ctgactaagcatttttcaacattttttgcccttttctgctgagtcagcaa
aatttcaaactcaaatatctcatgttctagcctataaatgacccctctaa
tcgatagtactcttcaagacgcatctgttaaaagtggtatctttcgctga
aaattttctcaaaaatgctgacgtcagcNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcgaacccctacaaacccccctcCCCAATATTGAGTCGAGAATTCC
TATAAACCATTCCTTAGCAGAGCAAGAAACATTGAATAGATGGAGAGCTG
GGAATGTAGAGAAAATCTGCATGATTTCGAAAGCTACTGTAAGGCGTTCA
GGTTTGAGGGAACTGATCCTAGATTTAAGCTAAGACTTAGTCAGTGTAGA
GaacaaaagatatttttttgagattttctcaatATAATTGCGTAATGTAA
TGTGTGAACTAATGGTTATTCTTTGGTTTTTTCTTAGACGCAATCGTGAA
TGGCACCTGGGCGCCATGGGGTGACTGGGGTGGTTGTGACAAACCATGTG
GTACCGGTTTCCGATACAGATGGAGAAATTGTACCAATCCTGCACCTCAG
AACGGCGGATTGGATTGTGCAGGAGATAACAGAGCACATAAGACGTGTAA
TACAAACATATGTGAGCGTGAAAGAGGAGGTATATTAATCATGTTTTAAT
GCCTAGCATTTATGCTAAAAAGGAAAGCACGCAAGGCAATTACCAGCCAC
TGAGGTGCTAGGCGTCTAATCAAAGGAACAGCAACCTTTTTTCTGACTGA
GTAAattaaataatgataaaaatattATGGCAATTATGagataaaataat
atatagAAAATTCatcttcaaagaaattttgatgGATTTAATAATTTTGT
GTAAGGTTTTAAGTTGATTTTAAAGAAGTAATTTTATAGCCTTTTTTAGC
ATGTAGGGAGataaatactttaatgggataaactttcgcggggattagaT
TTCGTGGTTgagcctatccgcgaaattcaaaaatttcgtggggacttaat
ttcgcgtgtGCCACTATATTGgatggcaatattttcacgattttttgact
tctactgtcaaatcatgcatgttggttgttgaaatacacattatttgcgc
ttctttgatgcaagtaaccattcataaagtatttgtttgacatattttga
gtattgtttagaaatatttcgcggatgaggctcttccaaatttccaatgg
gacttaatttcgcggatggcacccaaatccgcgaaatccgcgaaatttaa
tccccgcgcaATTTTATCCCCTTAAAGTATATATCTtccttaaccctttc
cgtgccgatgtcgtatatatccgacatgcaaattttcactctacttgcca
atgtcggatatatccgacatcaattttttttacctaattgctgaggcctt
taaaaaagagggagctctattgccgagaaatcagcttttaggaaaatggt
tttcttattttgccaaataaaaaaaatccaaataataATAGTGACAGTAT
ATATTAAGTGCTCAAAAGATTTATTTCAGGTTTATTTTAGTctatcataa
aatataaaactaatgtcaaatacaaatgtcaaacattggcaaataggaat
aaaatatccttgtcgtatatatccgacatgcggcaacacgagttaaaatt
tgcatgtcgggtatatacgacatcggcaaatcaggttactaaaaaaaatt
acccctcggcaaatggattggggtacaaaaacAAGGTAACGGCACGCAAA
GGGCTTAGAGTGCGAACAGTAGttgattcaagttatgaagTGATTGATAT
TAAATAGATTTTAAACCAGTTTACGcccaaaaaatttaaagtttttttct
tcacaaCGTTCTAAGAGTTTGAAGTTTCTGTTTCTAGTGTGATGATGATG
AGAGATCACTTTAAAAGCTAATGGTTATACTCTCAAGTAACATAGAATCT
ACAGAATGTttatattaaaggttttgtttttaaataagagtgaatATCGT
TTGCTTTCTTATCAATtgtaattcacaagctttttcacattggattgaca
tggatgtggagcaagattggtcagaaagaggaaaacaaaaacatttcttt
tgtgcttatatcagcataattaTACAATAAGGCAGACACtaccctgatat
gaaatatgtgtctgaacACTTATGAAAGAATAAAACCTTTATCATAAAGA
TTTCTACATAAATCTGAGTTTGAAACAtagatattgtgtcaactctttat
tatagtaACGCTCTATTTACTTATCGAGCACTCTACGAGGAGAAGATAAA
CACCCTCTactcatggcgttctaaatctataTCATGACCTGTGTCTGCTT
TTATAGATCTATGGAATACATATAGCAGGTGTAAACGAGAAATAGGGTAT
TGTCTTGGACCAAATGGACGTAGGCCATCCAGGAGTGGTCTTTGGAAGCT
TGTGAATAAAGTGAGAGGAAAAGTAGATTGGGACAGAGAAATGTGTATGT
ATAAGTGTCTTCAAAGACGTGGTGCTACAGCCTGCGAAATGTACTATAAC
GATTGGGGATGCTATGTTCATACTGCACCTGTGACCAGAGGAGACGGTTA
CACAAATAATTATTGTTGGGTTTTATCTAAGTGTAAAAGTAAGTCATGTT
TTAtctttaaaacaatattttaaaGTGGATTAATTTACGCGAGGATTTTC
GCGAGTTTCGCAAGCTTCTCCGCAAATTAGCGAAAGTTAATGCTCCCGAA
AATCCTCAAACCAAATCAGGATTTCTGCCAAaagtagacgatcctatcgt
ctacacaagatcactaaaaaagggaatagtttaggagaggcgtgataaat
tcgatGGAGTAAgtagtggcggagatgtttacgttttgttccaaaactct
accatcagttttttcccgtaaaccgccctgaNtagtggcggagatgttta
cgttttgttccaaaactctaccatcagttttttcccgtaaaccgccctga
cgccttAACTCTTTCCCGTGTTTACTGACCTTTAAACGGATGATAGCATC
GTCTATGCCAAAAGCAttagattttttgtcaaaattcaaaggaaaattaa
aaaaattaattgaaaaaggGGACGAttcattcaaagaaaaaaccccgcga
aaataattttcttgttGATTTTTGTACAAGACTTTTaacctttcttaaaa
aaagttatCAGAGATTGACTTTCATGTTAGTACAACACAGacaacaataa
aaataatacaCTTGGCTTGATAATTTAGTTTTAAATATCCAAACCTTGTT
CATGTTGTAAGTGTAACGTTGGTGTGTAATAGAATTCTCTAACAGCTTTT
ccataaatttatttttagctGATGGTGTCTGGTCTCAAN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039198	XLOC_039198	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00062566-exon-scaffold_369-1491911889:339933..340080	TCONS_00062566-exon-scaffold_369-1491911889:339933..340080	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1510915933:339933..340080	TCONS_00062566-exon-scaffold_369-1510915933:339933..340080	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1575043694:339933..340080	TCONS_00062566-exon-scaffold_369-1575043694:339933..340080	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1491911889:343220..343411	TCONS_00062566-exon-scaffold_369-1491911889:343220..343411	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1510915933:343220..343411	TCONS_00062566-exon-scaffold_369-1510915933:343220..343411	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1575043694:343220..343411	TCONS_00062566-exon-scaffold_369-1575043694:343220..343411	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1491911889:345139..345420	TCONS_00062566-exon-scaffold_369-1491911889:345139..345420	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1510915933:345139..345420	TCONS_00062566-exon-scaffold_369-1510915933:345139..345420	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1575043694:345139..345420	TCONS_00062566-exon-scaffold_369-1575043694:345139..345420	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1491911889:346151..346171	TCONS_00062566-exon-scaffold_369-1491911889:346151..346171	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1510915933:346151..346171	TCONS_00062566-exon-scaffold_369-1510915933:346151..346171	Clytia hemisphaerica	exon
TCONS_00062566-exon-scaffold_369-1575043694:346151..346171	TCONS_00062566-exon-scaffold_369-1575043694:346151..346171	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_369	supercontig	scaffold_369:339933..346171 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.75654	5.43486	1.67663	1.04101	3.19693	3.65872	6.51603	5.21471	3.2889	2.46005	5.29226	4.35539	4.42194	5.13789	3.83625	5.72857	3.12969	6.0791	3.9104	2.50705	3.46532	3.52854	4.32112	5.64409	36.287	29.018	1.72552	1.07663	3.25743	3.82848

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00062566 vs. Swiss-Prot (Human)

BLAST of TCONS_00062566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00062566 (transcript) - C. hemisphaerica