TCONS_00062568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062568
Unique NameTCONS_00062568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1110

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062568 ID=TCONS_00062568|Name=TCONS_00062568|organism=Clytia hemisphaerica|type=transcript|length=1110bp
AAAATGTTTCCTTTCATCAAACTGATTTCAAgctgcaatttttctttttg
gaggGTTAGAATTTCGTCCTCTCGTCGAAGGTTTCTCTCTTTCAAAAGAA
GGTTTTTGTTTCTGAGGCGTTCGCCTTTCAGACGAGCCTTTTGTATTGCA
AGTTCTTGAAGAAGacattttttctgaattttcttatTCGCAGCTAGCGT
CGAGCGTTTGATTAATGACTTCCCTTGCTTGGGTGCTGTGgctttttgtt
ttcctttcgTAGTTTTTTGAATTGTTTCGTTGGTTTCATCTTGAGGACCC
ATAATAGCGGTCGATGAAAGCATTGGGTCTGCTGATACCTCACTCATCAT
TGACGTTGAAAAAGATCcgatttctgtaaaaataaataattaggAAATTA
TTATCTTAGAATTATAATTAGCTGATTGCTTCATTAGTCTCTTGTTTTCC
GGTGGGAGGGAGTAGAGGACATCAAGGATAATAAGTATCACACCAGAAAG
ATCATCAGCAAGTGtattgaaaaaacaaacaaggaaaCTTACCAGTTTCA
TGTGCGTTTGTTGCAAAACCATGAAGGCCCTCAAAAGAGGGACGCCCTTC
GAATAAACTCATTATTCTCTGGTCTGATGAAGACGGTTCTTTTGGTGGAG
GACCACCACCAGTGCCATTTTGATGTTTCTTGAATTTATTATAGGCCAGT
TTTGCTTCAGATTTAATGTTTTTAAATTTGTTTTGTATACTAGCAATCGT
ACGAGGCGTTACCCCAACAGCATTAACGTTGCTGGCTATTTTTTGCCATG
ATTCGTTCTTGTTTTGTTGTGTAAGAGCATTTGAAAATTTTCCTTCAAGG
ATATCTTTGAATTCTTCGTATGAGTCTAGTAGGAATCGTGTTTCATCTGC
TGAAAAGTTCGGTTTTCTTGTGAACTTTGGTTTCTTCTCATTTACATTCT
CCATTTTTATTTGAGTTTTGGTGATTTTAGAATTTTTTTTTGTTTTGTTT
TTGTTTTTGTTTTGGAAACGAGGGAAAACCCCGGCGCATTCGATTTTGCT
CGAATTGCGCTTCAAGGTCTTCTTTTTCGGGGAAACCCCTCGGATTAGTA
AATCAAGCTT
Run BLAST on NCBI

transcript from alignment at scaffold_369:364662..365830+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062568 ID=TCONS_00062568|Name=TCONS_00062568|organism=Clytia hemisphaerica|type=transcript|length=1169bp|location=Sequence derived from alignment at scaffold_369:364662..365830+ (Clytia hemisphaerica)
AAAATGTTTCCTTTCATCAAACTGATTTCAAgctgcaatttttctttttg
gaggGTTAGAATTTCGTCCTCTCGTCGAAGGTTTCTCTCTTTCAAAAGAA
GGTTTTTGTTTCTGAGGCGTTCGCCTTTCAGACGAGNAGGTTTCTCTCTT
TCAAAAGAAGGTTTTTGTTTCTGAGGCGTTCGCCTTTCAGACGAGCCTTT
TGTATTGCAAGTTCTTGAAGAAGacattttttctgaattttcttatTCGC
AGCTAGCGTCGAGCGTTTGATTAATGACTTCCCTTGCTTGGGTGCTGTGg
ctttttgttttcctttcgTAGTTTTTTGAATTGTTTCGTTGGTTTCATCT
TGAGGACCCATAATAGCGGTCGATGAAAGCATTGGGTCTGCTGATACCTC
ACTCATCATTGACGTTGAAAAAGATCcgatttctgtaaaaataaataatt
aggAAATTATTATCTTAGAATTATAATTAGCTGATTGCTTCATTAGTCTC
TTGTTTTCCGGTGGGAGGGAGTAGAGGACATCAAGGATAATAAGTATCAC
ACCAGAAAGATCATCAGCAAGTGtattgaaaaaacaaacaaggaaaCTTA
CCAGTTTCATGTGCGTTTGTTGCAAAACCATGAAGGCCCTCAAAAGAGGG
ACGCCCTTCGAATAAACTCATTATTCTCTGGTCTGATGAAGACGGTTCTT
TTGGTGGAGGACCACCACCAGTGCCATTTTGATGTTTCTTGAATTTATTA
TAGGCCAGTTTTGCTTCAGATTTAATGTTTTTAAATTTGTTTTGTATACT
AGCAATCGTACGAGGCGTTACCCCAACAGCATTAACGTTGCTGGCTATTT
TTTGCCATGATTCGTTCTTGTTTTGTTGTGTAAGAGCATTTGAAAATTTT
CCTTCAAGGATATCTTTGAATTCTTCGTATGAGTCTAGTAGGAATCGTGT
TTCATCTGCTGAAAAGTTCGGTTTTCTTGTGAACTTTGGTTTCTTCTCAT
TTACATTCTCCATTTTTATTTGAGTTTTGGTGATTTTAGAATTTTTTTTT
GTTTTGTTTTTGTTTTTGTTTTGGAAACGAGGGAAAACCCCGGCGCATTC
GATTTTGCTCGAATTGCGCTTCAAGGTCTTCTTTTTCGGGGAAACCCCTC
GGATTAGTAAATCAAGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039200XLOC_039200Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062568-exon-scaffold_369-1491911889:364662..364741TCONS_00062568-exon-scaffold_369-1491911889:364662..364741Clytia hemisphaericaexon
TCONS_00062568-exon-scaffold_369-1510915933:364662..364741TCONS_00062568-exon-scaffold_369-1510915933:364662..364741Clytia hemisphaericaexon
TCONS_00062568-exon-scaffold_369-1575043694:364662..364741TCONS_00062568-exon-scaffold_369-1575043694:364662..364741Clytia hemisphaericaexon
TCONS_00062568-exon-scaffold_369-1491911889:364801..365830TCONS_00062568-exon-scaffold_369-1491911889:364801..365830Clytia hemisphaericaexon
TCONS_00062568-exon-scaffold_369-1510915933:364801..365830TCONS_00062568-exon-scaffold_369-1510915933:364801..365830Clytia hemisphaericaexon
TCONS_00062568-exon-scaffold_369-1575043694:364801..365830TCONS_00062568-exon-scaffold_369-1575043694:364801..365830Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:364662..365830 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149403	0.304963	0.491284	0.567034	0	0	0	0.325881	0	0.175407	0.0492275	0.109607	0	0	0	0	0.0886782	0	0	0.129496	0	0	0	0.246275	0	0	0	0.263084	0.110206	0.133583
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR028002Myb_DNA-bind_5
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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