TCONS_00062578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062578
Unique NameTCONS_00062578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062578 ID=TCONS_00062578|Name=TCONS_00062578|organism=Clytia hemisphaerica|type=transcript|length=330bp
cACAAATAGAACCAAGATGTGTCTCACTGGCAGCTTGTCAGAATATTGTT
TTCGTATAAAAagcattcaatttttaaattccaaattaccactttcactt
ttcatcatttccacACCATGTATCGCACCAccaaaaatgttatataaatA
CCATATTTCCATCTTATTTTTGAGGATTTCTGTAGCCATTTCAGAGTTAC
ATTCTCTGGGATAAGAAGGTTATCAAGTTTAACTTGTACTATAGAAAAAG
CAGTGATCTGTTACCCAATGAATGTGAGCATATAAACATATTGAACATTC
CGTGCAAAAAGCATCCTGCATGCAGTCATG
Run BLAST on NCBI

transcript from alignment at scaffold_369:53147..53476

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062578 ID=TCONS_00062578|Name=TCONS_00062578|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at scaffold_369:53147..53476 (Clytia hemisphaerica)
CATGACTGCATGCAGGATGCTTTTTGCACGGAATGTTCAATATGTTTATA
TGCTCACATTCATTGGGTAACAGATCACTGCTTTTTCTATAGTACAAGTT
AAACTTGATAACCTTCTTATCCCAGAGAATGTAACTCTGAAATGGCTACA
GAAATCCTCAAAAATAAGATGGAAATATGGTatttatataacatttttgg
TGGTGCGATACATGGTgtggaaatgatgaaaagtgaaagtggtaatttgg
aatttaaaaattgaatgctTTTTATACGAAAACAATATTCTGACAAGCTG
CCAGTGAGACACATCTTGGTTCTATTTGTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039207XLOC_039207Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062578-exon-scaffold_369-1491911889:53147..53476TCONS_00062578-exon-scaffold_369-1491911889:53147..53476Clytia hemisphaericaexon
TCONS_00062578-exon-scaffold_369-1510915933:53147..53476TCONS_00062578-exon-scaffold_369-1510915933:53147..53476Clytia hemisphaericaexon
TCONS_00062578-exon-scaffold_369-1575043694:53147..53476TCONS_00062578-exon-scaffold_369-1575043694:53147..53476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:53147..53476 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.94108	1.46404	0.757465	0.954127	11.9887	7.22736	10.0758	7.02381	2.27313	0.506424	0	1.71634	1.6527	0.922695	1.12323	1.17097	0.220101	0.377223	2.38749	3.26686	0	0	0	2.48274	5.09787	4.84273	5.1278	3.90187	3.29393	3.14424
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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