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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062592 ID=TCONS_00062592|Name=TCONS_00062592|organism=Clytia hemisphaerica|type=transcript|length=1176bp
CATTGCACTGTGATATGCAGTAAGGAAAAAAAGTATTACgaaaacgctca
gttcgtatattaagaggataaataggatttcttgttcttatgTTAACTGG
CTCTGTAAGCGTAAGTAAGACGGAGCTTggttatttatgattttatagaa
aaatatcattctTCTGGCAAAGCGTCTGTCAGCAAGGCTTTCAAGCCCAA
GTTCAGAGTAGATTCTCtcctgagacgttccacgaaagcaACCTGTGATA
GCTAagcaggcattatattgaatggattcaagcttctgcacaaaaGAGGC
ATTTCCTGGGCGGTCATATATGATATCACCGTAGTCAAGATGAGGTCTAA
TGTAAGATTTATAGATGGTAAGAAGAGATCTTCTAGGCACATGCTTGCAA
AGTCTGTTAATAAGGCCAATacctttattggccttttttatctTCTCCTC
AAGATGgtaatcaaaagaaagttttgaatctaagataAGACCTAGATATT
TCTGGTGCTCACTGACAGCGATGTTGAGTTATTGAAGGagattactggag
cattagcaGGAGTGATTCTGCAGGTAAAATAGACTTCCACAGCTTGTTTA
GAAGTGTCAGGGTTgaaagacatcttccattgacgaGCCGTCCCACTTAT
CCTGGCAAGATCTCTGTTTAGTACCCCAAGGCTCAAAGAGCTGGTCCATC
ACAAGGGAGAATAAGAAGGTGTCATCAGTCaagattttgagttttgagtc
AAGGTTTAATGGGAGATCATTAATGTAAATTAAGAAGAATAAGGGACCAA
GAATCGAGCCCTGAGGTACCCCAGCATTGATCCTCTTCCACTCAGACGTT
TTCCCATTCAACACAACTCTCTGATGCCTATCATCAAGAAAGTTACGTAT
TAAGGAAAGCAGAGGTCCGGTTACCCCATaagatttgaatttgaaaatca
agcCATCATGCCAAACCCGgtcgaatgcctttgaaatatctaaaaaaaca
CCCCTGGTATCTAAAGTAGGGTTCACGTCGAACCCTGTAAAaatatcatg
cgttatggaCAACAACTGAGAAATGCAAGAGTCACCCTCCCGAAATCCAG
ACTGACATGGAGAAAATAGattatttgtttcaaaatatctgtaaagTGCA
TCATAGATacacttttcaaatatttt Run BLAST on NCBI protein sequence of TCONS_00062592-protein >TCONS_00062592-protein ID=TCONS_00062592-protein|Name=TCONS_00062592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
KIFEKCIYDALYRYFETNNLFSPCQSGFREGDSCISQLLSITHDIFTGFD
VNPTLDTRGVFLDISKAFDRVWHDGLIFKFKSYGVTGPLLSLIRNFLDDR
HQRVVLNGKTSEWKRINAGVPQGSILGPLFFLIYINDLPLNLDSKLKILT
DDTFLFSLVMDQLFEPWGTKQRSCQDKWDGSSMEDVFQP Run BLAST on NCBI transcript from alignment at scaffold_369:428549..429724 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062592 ID=TCONS_00062592|Name=TCONS_00062592|organism=Clytia hemisphaerica|type=transcript|length=1176bp|location=Sequence derived from alignment at scaffold_369:428549..429724 (Clytia hemisphaerica)
aaaatatttgaaaagtgtATCTATGATGCActttacagatattttgaaac
aaataatCTATTTTCTCCATGTCAGTCTGGATTTCGGGAGGGTGACTCTT
GCATTTCTCAGTTGTTGtccataacgcatgatattTTTACAGGGTTCGAC
GTGAACCCTACTTTAGATACCAGGGGtgtttttttagatatttcaaaggc
attcgacCGGGTTTGGCATGATGgcttgattttcaaattcaaatcttATG
GGGTAACCGGACCTCTGCTTTCCTTAATACGTAACTTTCTTGATGATAGG
CATCAGAGAGTTGTGTTGAATGGGAAAACGTCTGAGTGGAAGAGGATCAA
TGCTGGGGTACCTCAGGGCTCGATTCTTGGTCCCTTATTCTTCTTAATTT
ACATTAATGATCTCCCATTAAACCTTgactcaaaactcaaaatcttGACT
GATGACACCTTCTTATTCTCCCTTGTGATGGACCAGCTCTTTGAGCCTTG
GGGTACTAAACAGAGATCTTGCCAGGATAAGTGGGACGGCtcgtcaatgg
aagatgtctttcAACCCTGACACTTCTAAACAAGCTGTGGAAGTCTATTT
TACCTGCAGAATCACTCCtgctaatgctccagtaatctCCTTCAATAACT
CAACATCGCTGTCAGTGAGCACCAGAAATATCTAGGTCTtatcttagatt
caaaactttcttttgattacCATCTTGAGGAGAagataaaaaaggccaat
aaaggtATTGGCCTTATTAACAGACTTTGCAAGCATGTGCCTAGAAGATC
TCTTCTTACCATCTATAAATCTTACATTAGACCTCATCTTGACTACGGTG
ATATCATATATGACCGCCCAGGAAATGCCTCttttgtgcagaagcttgaa
tccattcaatataatgcctgctTAGCTATCACAGGTtgctttcgtggaac
gtctcaggaGAGAATCTACTCTGAACTTGGGCTTGAAAGCCTTGCTGACA
GACGCTTTGCCAGAagaatgatatttttctataaaatcataaataaccAA
GCTCCGTCTTACTTACGCTTACAGAGCCAGTTAAcataagaacaagaaat
cctatttatcctcttaatatacgaactgagcgttttcGTAATACTTTTTT
TCCTTACTGCATATCACAGTGCAATG Coding sequence (CDS) from alignment at scaffold_369:428549..429724 >TCONS_00062592 ID=TCONS_00062592|Name=TCONS_00062592|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_369:428549..429724 (Clytia hemisphaerica)
aaaatatttgaaaagtgtATCTATGATGCActttacagatattttgaaac
aaataatCTATTTTCTCCATGTCAGTCTGGATTTCGGGAGGGTGACTCTT
GCATTTCTCAGTTGTTGtccataacgcatgatattTTTACAGGGTTCGAC
GTGAACCCTACTTTAGATACCAGGGGtgtttttttagatatttcaaaggc
attcgacCGGGTTTGGCATGATGgcttgattttcaaattcaaatcttATG
GGGTAACCGGACCTCTGCTTTCCTTAATACGTAACTTTCTTGATGATAGG
CATCAGAGAGTTGTGTTGAATGGGAAAACGTCTGAGTGGAAGAGGATCAA
TGCTGGGGTACCTCAGGGCTCGATTCTTGGTCCCTTATTCTTCTTAATTT
ACATTAATGATCTCCCATTAAACCTTgactcaaaactcaaaatcttGACT
GATGACACCTTCTTATTCTCCCTTGTGATGGACCAGCTCTTTGAGCCTTG
GGGTACTAAACAGAGATCTTGCCAGGATAAGTGGGACGGCtcgtcaatgg
aagatgtctttcAACCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062592-exon-scaffold_369-1491911889:428549..429724 | TCONS_00062592-exon-scaffold_369-1491911889:428549..429724 | Clytia hemisphaerica | exon |
| TCONS_00062592-exon-scaffold_369-1510915933:428549..429724 | TCONS_00062592-exon-scaffold_369-1510915933:428549..429724 | Clytia hemisphaerica | exon |
| TCONS_00062592-exon-scaffold_369-1575043694:428549..429724 | TCONS_00062592-exon-scaffold_369-1575043694:428549..429724 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_369 | supercontig | scaffold_369:428549..429724 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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