TCONS_00062596 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062596
Unique NameTCONS_00062596
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062596 ID=TCONS_00062596|Name=TCONS_00062596|organism=Clytia hemisphaerica|type=transcript|length=342bp
AGCCTGTTCAATTGATTTGTGCTTAGACACCAATTCTGACATGCATATAT
CAGGCGACTTCGTACAAAACAATCCAGGAAAGAAACACGGGTTCGTAAGT
TTACGTGAAAATTTTGCAGGAGATTTGATAATTCAGCAAATTTTACACAC
GCTAATTGAATACGTTGATTTACTTCACTATCTCCTGTGCTGGGGTCTTT
ACAGTTTATATAGGCCCCGAGGTATCGAAAGATGGTGacatttttcaagt
taaaaCCTTTGAGGTTGACAATAGACGGTGGTATGTCATCAGCGTTGAGG
ATCATCGTTTCAGTTTTCGTATTATTTATTGTAAGACCAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_369:440111..440452

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062596 ID=TCONS_00062596|Name=TCONS_00062596|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at scaffold_369:440111..440452 (Clytia hemisphaerica)
ATTTGGTCTTACAATAAATAATACGAAAACTGAAACGATGATCCTCAACG
CTGATGACATACCACCGTCTATTGTCAACCTCAAAGGttttaacttgaaa
aatgtCACCATCTTTCGATACCTCGGGGCCTATATAAACTGTAAAGACCC
CAGCACAGGAGATAGTGAAGTAAATCAACGTATTCAATTAGCGTGTGTAA
AATTTGCTGAATTATCAAATCTCCTGCAAAATTTTCACGTAAACTTACGA
ACCCGTGTTTCTTTCCTGGATTGTTTTGTACGAAGTCGCCTGATATATGC
ATGTCAGAATTGGTGTCTAAGCACAAATCAATTGAACAGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039225XLOC_039225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062596-exon-scaffold_369-1491911889:440111..440452TCONS_00062596-exon-scaffold_369-1491911889:440111..440452Clytia hemisphaericaexon
TCONS_00062596-exon-scaffold_369-1510915933:440111..440452TCONS_00062596-exon-scaffold_369-1510915933:440111..440452Clytia hemisphaericaexon
TCONS_00062596-exon-scaffold_369-1575043694:440111..440452TCONS_00062596-exon-scaffold_369-1575043694:440111..440452Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:440111..440452 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06699	1.82085	1.81216	1.47743	7.91396	8.81205	7.88779	11.2372	6.29395	8.9098	11.0803	5.86255	4.96737	5.89561	0.757343	1.13784	0	0.410494	0.850679	1.78035	0	0.75479	0.917546	1.3903	0.859188	0.766805	6.21801	1.95177	2.9607	1.50824
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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