TCONS_00062612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062612
Unique NameTCONS_00062612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062612 ID=TCONS_00062612|Name=TCONS_00062612|organism=Clytia hemisphaerica|type=transcript|length=1399bp
ATCAACACATCAGTATCATTAAGTGATGAGGTGGATTTTAACCAAGAATA
CACAACAGATAGAAATCAAGAGATCCTGCACATTCCGAGTGACAATGACA
GTGATGTTGACGTTGTTAATGTGACTCAATTTGAAAGTGGCaacaatcaa
aatcaacaaAGCTATAATCGTCTCACAGAAAGGACAGTTGAACTTGATGA
AGATCACATTTTCAATAACAGAGACGAAGATAAAGAAAACAACAATCAAG
AAAGTGAAAGcaTTCCTGCTTGTGATCCTGATCCCCAAATTAAAACTACA
CAACCCATCGACAACGTGACAGCATTAAAGATGATCTTCGATGCAAACCC
TGATGTTGTTTCAAGTTCTCTGCCAAAGCATATTGAGAAGAAtgcatatt
ttttattgaaacttgATTCTTCAACAGATGAGTATTACGATGGTTATAAC
TGGAGACAAACAAGTGGAGAATCTGTGAAGTACTACCatattgatgaaaa
tgataaagTGGTATCAGGGAAGAACAAAAACTGGTTCAAAGTTAGTAGGA
TTCGTTCTAAAAATACGTCAGCTGCTGATTTTAACAGACTGATAATAACT
GTTGAAAACTCATTCAAAGTGCGGTGTGAGTTTGCTGTTGTTCAATACAG
GTTTGATGATAAACCACACAAAATCACGATCAAGCCTCATGGCAATTCTT
CTTTAACTATACCAAACATTCCTGTAAAGAAGTCAGTATTGGAAAGGGTT
ACTCAAGAGGTGAGAAtgcaaaaacattcaaataaaCATGTTCTACATAA
ACTTGAAAGTGAGAATGGAGGGCTGTTGGCTGATCCTGGAGATGTGCCAA
GGAACGAACGCCAAATCAAATACGTTAAATCAAAAGAGAAGCGAGGAATG
AATGATGTTATCGCAGATGTGCTAGTGTTACAAAAGGAAATGAGTCATTT
TGTTCAAAGGGTAAGAATGTTTCCTCGTCTGTTTATTTCAATCTTGTTTG
TCCCTCTTTTTTGTTATTAGCGGTATAAACTAGTTCCACGATAGAACACT
ATTACTAAATATATCAAGGAAATCTTTATTAAGAGTTGATAAAAAGTTGC
ACAAGCCACAAAACTCTTGCGTAACTAGGGGTCAAGCAATTGGTTCCAGA
CATCATAATGACTAAGTATAAATACTCACCACCCCTTTATAGTGAGCACA
TGCCCCCTTAAAGGAATTTTTGGATCAAATTTATGGGGCaatttaaaatt
tgaggggTGGTTTGAAGAAAAATTGGGGGTGGTTAAAGNCAAATTTATGG
GGCaatttaaaatttgaggggTGGTTTGAAGAAAAATTGGGGTGGTTAAA
GATCAAGGGGAGGGGGCTTGTGGAAATCTTTCCTCTCAAACACTTGATA
Run BLAST on NCBI

transcript from alignment at scaffold_370:34541..37417+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062612 ID=TCONS_00062612|Name=TCONS_00062612|organism=Clytia hemisphaerica|type=transcript|length=2877bp|location=Sequence derived from alignment at scaffold_370:34541..37417+ (Clytia hemisphaerica)
ATCAACACATCAGTATCATTAAGGTATCCTCATGAtatgattttctgaaa
aactttgATTATCCATATAACTTTAAGGGGAGGTTCNCCAATCAACACAT
CAGTATCATTAAGGTATCCTCATGAtatgattttctgaaaaactttgATT
ATCCATATAACTGTAAGGGGAGGTTCATTGACAAAGTTTGGTTAACACAT
CAGCAAAGTTCTTTGAAGCAAGTTTTCTAAATTTCTAGTTTTGCTGTTTT
GGACTGggttaaaatcctaaaaaatttctattttaagcaattttgtgAAG
CGAATACTGGTAATAGACCCAATGAACCTCTTTCAAGAGAGAATATACTA
TCATTTATGTTAACATTGGGAGTGAATAATGCCTTGAAAGATAGGAAAAA
AATCCTGTTGACACCTCGGTTTTGAGGGGGTTGCATCAAATTTTGAGAGA
GGGTTGCTCTAGTCTAGGGGTAATGGTCCCCTTCTGAACAACGAACCTAA
ATATCATGTTTGTTTCTATGCTTATAAGTGTTATACTTGTATAAGAAAAC
ATGTAGTAAACTACTTTCTGCCATTTTACCTTAAGTGATGAGGTGGATTT
TAACCAAGAATACACAACAGATAGAAATCAAGAGATCCTGCACATTCCGA
GGTAAGTTTGGTGGGAACATTGTGATCTTTTGGCCAGGAAAGTGATTTAT
TATGGTTATCTGCAGTCATGAGATTGGTTGGATGAATAATAATTATACCG
GGTGTCTGTGAAAAAACTTCCNTGCACATTCCGAGGTAAGTTTGGTGGGA
ACATTGTGATCTTTTGGCCAGGAAAGCGATTTATTATTATGGTTATCTGC
AGTCATGAGATTGGTTGGATGAATAATAATTATACCGGGTGtgaaaaaac
ttccccctgtttgattcaaaatttcgaaaaagtgaaaaatatattagctt
gattttttcgaaatcgtttagaAGAGGGTTTAACTTAAGTTAAACTAATA
Tatgttttcactttttcgcaattttgaatcaaacagggggaagttttttc
aCAGACACCTGGTATGAATTGTATTATTCATTTGAGATTTTATAACTTAT
TACATCTTACAGTGACAATGACAGTGATGTTGACGTTGTTAATGTGACTC
AATTTGAAAGTGGCaacaatcaaaatcaacaaAGCTATAATCGTCTCACA
GAAAGGTAAACAATTACATTTCTTAATATGAAAACTTAACCCCTGCTGCa
cctctttttaaaatttttcttgactCCCCTCCACAGTGTTATCTCATATT
TTAATTCCAGAATTTTTGCTTCGTTCTTTTGTTTGCTCCTTTTTAGGATA
TTTTCCTTTAATGTCTATTATTTGCTCTCATTTCTAATCAACATCTAGCT
TGTGtgagtttttaattttaagttaATACAAAATGAAGGTCTTTCCAATA
TATCTTACTAACTGACCAAGTAAGCATACAAATTTATTAATATTTCAGGA
CAGTTGAACTTGATGAAGATCACATTTTCAATAACAGAGACGAAGATAAA
GAAAACAACAATCAAGAAAGTGAAAGGTATTATCtagatttgaatttaaa
ttttcaattgtgACCTTTCACTTAAACGTGTATTCGACTTTACTGAATTT
GATTTCATattaaaataaaagataaacTCTCAGGGCAGAAATAGATTTTA
AAACATGACTGATTattgtttctaaatttttatttaagcaTTCCTGCTTG
TGATCCTGATCCCCAAATTAAAACTACACAACCCATCGACAACGTGACAG
CATTAAAGATGATCTTCGATGCAAACCCTGATGTTGTTTCAAGTTCTCTG
CCAAAGCATATTGAGAAGAAtgcatattttttattgaaacttgATTCTTC
AACAGATGAGTATTACGATGGTTATAACTGGAGACAAACAAGTGGAGAAT
CTGTGAAGTACTACCatattgatgaaaatgataaagTGGTATCAGGGAAG
AACAAAAACTGGTTCAAAGTTAGTAGGATTCGTTCTAAAAATACGTCAGC
TGCTGATTTTAACAGACTGATAATAACTGTTGAAAACTCATTCAAAGTGC
GGTGTGAGTTTGCTGTTGTTCAATACAGGTTTGATGATAAACCACACAAA
ATCACGATCAAGCCTCATGGCAATTCTTCTTTAACTATACCAAACATTCC
TGTAAAGAAGTCAGTATTGGAAAGGGTTACTCAAGAGGTGAGAAtgcaaa
aacattcaaataaaCATGTTCTACATAAACTTGAAAGTGAGAATGGAGGG
CTGTTGGCTGATCCTGGAGATGTGCCAAGGAACGAACGCCAAATCAAATA
CGTTAAATCAAAAGAGAAGCGAGGAATGAATGATGTTATCGCAGATGTGC
TAGTGTTACAAAAGGAAATGAGTCATTTTGTTCAAAGGGTAAGAATGTTT
CCTCGTCTGTTTATTTCAATCTTGTTTGTCCCTCTTTTTTGTTATTAGCG
GTATAAACTAGTTCCACGATAGAACACTATTACTAAATATATCAAGGAAA
TCTTTATTAAGAGTTGATAAAAAGTTGCACAAGCCACAAAACTCTTGCGT
AACTAGGGGTCAAGCAATTGGTTCCAGACATCATAATGACTAAGTATAAA
TACTCACCACCCCTTTATAGTGAGCACATGCCCCCTTAAAGGAATTTTTG
GATCAAATTTATGGGGCaatttaaaatttgaggggTGGTTTGAAGAAAAA
TTGGGGGTGGTTAAAGNCAAATTTATGGGGCaatttaaaatttgaggggT
GGTTTGAAGAAAAATTGGGGTGGTTAAAGATCAAGGGGAGGGGGCTTGTG
GAAATCTTTCCTCTCAAACACTTGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039238XLOC_039238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062612-exon-scaffold_370-1491911889:34541..34563TCONS_00062612-exon-scaffold_370-1491911889:34541..34563Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1510915933:34541..34563TCONS_00062612-exon-scaffold_370-1510915933:34541..34563Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1575043694:34541..34563TCONS_00062612-exon-scaffold_370-1575043694:34541..34563Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1491911889:35126..35191TCONS_00062612-exon-scaffold_370-1491911889:35126..35191Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1510915933:35126..35191TCONS_00062612-exon-scaffold_370-1510915933:35126..35191Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1575043694:35126..35191TCONS_00062612-exon-scaffold_370-1575043694:35126..35191Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1491911889:35653..35745TCONS_00062612-exon-scaffold_370-1491911889:35653..35745Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1510915933:35653..35745TCONS_00062612-exon-scaffold_370-1510915933:35653..35745Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1575043694:35653..35745TCONS_00062612-exon-scaffold_370-1575043694:35653..35745Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1491911889:36039..36116TCONS_00062612-exon-scaffold_370-1491911889:36039..36116Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1510915933:36039..36116TCONS_00062612-exon-scaffold_370-1510915933:36039..36116Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1575043694:36039..36116TCONS_00062612-exon-scaffold_370-1575043694:36039..36116Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1491911889:36279..37417TCONS_00062612-exon-scaffold_370-1491911889:36279..37417Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1510915933:36279..37417TCONS_00062612-exon-scaffold_370-1510915933:36279..37417Clytia hemisphaericaexon
TCONS_00062612-exon-scaffold_370-1575043694:36279..37417TCONS_00062612-exon-scaffold_370-1575043694:36279..37417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:34541..37417 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15724	0.0597193	0	0.0835808	0.559951	0.573649	0.440455	0.566189	0.0536658	0.141106	0	0.217236	0.150885	0.192139	0.132339	0.243775	0.079732	0.0500483	0	0.165735	0.275887	0.177751	0.103156	0.136376	0.186669	0.483047	0.0585336	0.0568076	0	0.134362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top