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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062619 ID=TCONS_00062619|Name=TCONS_00062619|organism=Clytia hemisphaerica|type=transcript|length=821bp
cttttagatgtttgaactaatattaaaacaaacaatacaaaataaaaata
cattatTACGTCATGCGCTGCAACCACAATGTTGCGCATGTGCAGTACGT
CACATTATGAGGAAACCCCTCACCAAGCTTCCCAACCAATCAACGAAAGG
CACCAAAATGAAGAAATATGTTGTACCACCGCATAGGATTGGTGTAATCA
AAGGCCATGATTCACAGCATACTGGTGGTTTGAAAGGAAGTCATTGGGCT
GCCGAAAGATTTGCCGACGATATCATGATTCGACGTTTTATCGAAGGAAC
ATTTTACCAACATATTACGTCTGACGTTATTATTAAACGACGTTTGAACG
AAATTATCGTCACGTTTTTCGTAACGGGGCGTGGAGCTGACGGGACAACG
GCTAAAGTGTATTTCCTGAAAGCGTTTACAGAGAAACTTTTATCTGAGAT
GATGGGTTGTATTGTGAAAATGGAACTAAGGACTGGACCCGAATTTGtgt
gatatatttttctagcTCACATTTGTATTGATTGCTTGCAAGTAAAATGA
AGACAAATATTGCGATTGACGTTATTTCCAACCAATGTTATGGCTAATTT
AAGTGCTACCAAACGTCATTAAATCATCTCCCTTGTTGCGACGTAATTTT
AAGGACTGTTGGATCGTACTCATTTACACGTCtccgatttttgaaatttt
ccttagTAAAATTatagttttttgtttatttttttcaaaagaaatgatGA
GTGTGTTATTAGAGAAATATCTAAAAGTGAAAGTATTCAGACAAATGAAT
aataattttgaacttttgaat Run BLAST on NCBI protein sequence of TCONS_00062619-protein >TCONS_00062619-protein ID=TCONS_00062619-protein|Name=TCONS_00062619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MFELILKQTIQNKNTLLRHALQPQCCACAVRHIMRKPLTKLPNQSTKGTK
MKKYVVPPHRIGVIKGHDSQHTGGLKGSHWAAERFADDIMIRRFIEGTFY
QHITSDVIIKRRLNEIIVTFFVTGRGADGTTAKVYFLKAFTEKLLSEMMG
CIVKMELRTGPEFV Run BLAST on NCBI transcript from alignment at scaffold_370:79934..81639+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062619 ID=TCONS_00062619|Name=TCONS_00062619|organism=Clytia hemisphaerica|type=transcript|length=1706bp|location=Sequence derived from alignment at scaffold_370:79934..81639+ (Clytia hemisphaerica)
cttttagatgtttgaactaatattaaaacaaacaatacaaaataaaaata
cattatTACGTCATGCGCTGCAACCACAATGTTGCGCATGTGCAGTACGT
CACATTATGAGGAAACCCCTCACCAAGCTTCCCAACCAATCAACGAAAGG
CACCAAAATGAAGAAATATGTTGTACCACCGCATAGGATTGGTGTAATCA
AAGGCCATGATTCACAGCATACTGGTAAGATAGACTTCGTTTTTAATAGT
AAGGGGTTCCTTTATGATTCGTACCATCTTCCGTGGGACTCAATCGCATT
GGTTAGAAATAGATaggattttgaaacttttttgagagggcCGTGAATTA
GGCCTGGCTAGagttttcaaagttgaaaattgGAAAGTTATGTTAGTCAA
CGGGTTTTGACATTCCCTGGGCTATTATGTATGTATTTATGAATGTTGGG
ATCCTTTTTTAGAAGTATTTATCCTTCTTTTGAACTTTCGATAGCCTCTT
ATGCTTTTCGAGGGTCCGGCACTTTCTATTTTGTTGACACTTATACCATT
ATTTTATTTAAGGTGGTTTGAAAGGAAGTCATTGGGCTGCCGAAAGATTT
GCCGACGATATCATGATTCGACGTTTTATCGAAGGAACATTTTACCAACA
TATTACGTCTGACGTTATTATTAAACGACGTTTGAACGAAATTATCGTCA
CGTTTTTCGTAACGGGGCGTGGAGCTGACGGGACNGACCTAAAAACAAGc
ttaggtcggcaaaattttgccggcctCCGGCCGGATTTGGACGGCACTTA
CGTGCCGACTTACTTTTACTTGAATTTCGAGGGCTGTCCGTGGGACTCAA
TCGCATTGGTTAGAAATAGATaggattttgaaacttttttgagagggcCG
TGAACTAGagttttcaaagttgaaaattgGAAAGTTATGTTAGTCAACGG
GTTTTGACATTCCCTGGGCTATTATGTATGTATTTATGAATGTTGGGATC
CTTTTTTAGAAGTATTTATCCTTCTTTTGAACTTTCGATAGCCTCTTATG
CTTTTCGAGGGTCCGGCACTTTCTATTTTGTTGACACTTATACCATTATT
TTATTTAAGGTGGTTTGAAAGGAAGTCATTGGGCTGCCGAAAGATTTGCC
GACGATATCATGATTCGACGTTTTATCGAAGGAACATTTTACCAACATAT
TACGTCTGACGTTATTATTAAACGACGTTTGAACGAAATTATCGTCACGT
TTTTCGTAACGGGGCGTGGAGCTGACGGGACAACGGCTAAAGTGTATTTC
CTGAAAGCGTTTACAGAGAAACTTTTATCTGAGATGATGGGTTGTATTGT
GAAAATGGAACTAAGGACTGGACCCGAATTTGtgtgatatatttttctag
cTCACATTTGTATTGATTGCTTGCAAGTAAAATGAAGACAAATATTGCGA
TTGACGTTATTTCCAACCAATGTTATGGCTAATTTAAGTGCTACCAAACG
TCATTAAATCATCTCCCTTGTTGCGACGTAATTTTAAGGACTGTTGGATC
GTACTCATTTACACGTCtccgatttttgaaattttccttagTAAAATTat
agttttttgtttatttttttcaaaagaaatgatGAGTGTGTTATTAGAGA
AATATCTAAAAGTGAAAGTATTCAGACAAATGAATaataattttgaactt
ttgaat Coding sequence (CDS) from alignment at scaffold_370:79934..81639+ >TCONS_00062619 ID=TCONS_00062619|Name=TCONS_00062619|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_370:79934..81639+ (Clytia hemisphaerica)
atgtttgaactaatattaaaacaaacaatacaaaataaaaatacattatT
ACGTCATGCGCTGCAACCACAATGTTGCGCATGTGCAGTACGTCACATTA
TGAGGAAACCCCTCACCAAGCTTCCCAACCAATCAACGAAAGGCACCAAA
ATGAAGAAATATGTTGTACCACCGCATAGGATTGGTGTAATCAAAGGCCA
TGATTCACAGCATACTGGTGGTTTGAAAGGAAGTCATTGGGCTGCCGAAA
GATTTGCCGACGATATCATGATTCGACGTTTTATCGAAGGAACATTTTAC
CAACATATTACGTCTGACGTTATTATTAAACGACGTTTGAACGAAATTAT
CGTCACGTTTTTCGTAACGGGGCGTGGAGCTGACGGGACAACGGCTAAAG
TGTATTTCCTGAAAGCGTTTACAGAGAAACTTTTATCTGAGATGATGGGT
TGTATTGTGAAAATGGAACTAAGGACTGGACCCGAATTTGtgtgaatgtt
tgaactaatattaaaacaaacaatacaaaataaaaatacattatTACGTC
ATGCGCTGCAACCACAATGTTGCGCATGTGCAGTACGTCACATTATGAGG
AAACCCCTCACCAAGCTTCCCAACCAATCAACGAAAGGCACCAAAATGAA
GAAATATGTTGTACCACCGCATAGGATTGGTGTAATCAAAGGCCATGATT
CACAGCATACTGGTGGTTTGAAAGGAAGTCATTGGGCTGCCGAAAGATTT
GCCGACGATATCATGATTCGACGTTTTATCGAAGGAACATTTTACCAACA
TATTACGTCTGACGTTATTATTAAACGACGTTTGAACGAAATTATCGTCA
CGTTTTTCGTAACGGGGCGTGGAGCTGACGGGACAACGGCTAAAGTGTAT
TTCCTGAAAGCGTTTACAGAGAAACTTTTATCTGAGATGATGGGTTGTAT
TGTGAAAATGGAACTAAGGACTGGACCCGAATTTGtgtgaatgtttgaac
taatattaaaacaaacaatacaaaataaaaatacattatTACGTCATGCG
CTGCAACCACAATGTTGCGCATGTGCAGTACGTCACATTATGAGGAAACC
CCTCACCAAGCTTCCCAACCAATCAACGAAAGGCACCAAAATGAAGAAAT
ATGTTGTACCACCGCATAGGATTGGTGTAATCAAAGGCCATGATTCACAG
CATACTGGTGGTTTGAAAGGAAGTCATTGGGCTGCCGAAAGATTTGCCGA
CGATATCATGATTCGACGTTTTATCGAAGGAACATTTTACCAACATATTA
CGTCTGACGTTATTATTAAACGACGTTTGAACGAAATTATCGTCACGTTT
TTCGTAACGGGGCGTGGAGCTGACGGGACAACGGCTAAAGTGTATTTCCT
GAAAGCGTTTACAGAGAAACTTTTATCTGAGATGATGGGTTGTATTGTGA
AAATGGAACTAAGGACTGGACCCGAATTTGtgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062619-exon-scaffold_370-1491911889:79934..80157 | TCONS_00062619-exon-scaffold_370-1491911889:79934..80157 | Clytia hemisphaerica | exon |
| TCONS_00062619-exon-scaffold_370-1510915933:79934..80157 | TCONS_00062619-exon-scaffold_370-1510915933:79934..80157 | Clytia hemisphaerica | exon |
| TCONS_00062619-exon-scaffold_370-1575043694:79934..80157 | TCONS_00062619-exon-scaffold_370-1575043694:79934..80157 | Clytia hemisphaerica | exon |
| TCONS_00062619-exon-scaffold_370-1491911889:80496..80571 | TCONS_00062619-exon-scaffold_370-1491911889:80496..80571 | Clytia hemisphaerica | exon |
| TCONS_00062619-exon-scaffold_370-1510915933:80496..80571 | TCONS_00062619-exon-scaffold_370-1510915933:80496..80571 | Clytia hemisphaerica | exon |
| TCONS_00062619-exon-scaffold_370-1575043694:80496..80571 | TCONS_00062619-exon-scaffold_370-1575043694:80496..80571 | Clytia hemisphaerica | exon |
| TCONS_00062619-exon-scaffold_370-1491911889:81119..81639 | TCONS_00062619-exon-scaffold_370-1491911889:81119..81639 | Clytia hemisphaerica | exon |
| TCONS_00062619-exon-scaffold_370-1510915933:81119..81639 | TCONS_00062619-exon-scaffold_370-1510915933:81119..81639 | Clytia hemisphaerica | exon |
| TCONS_00062619-exon-scaffold_370-1575043694:81119..81639 | TCONS_00062619-exon-scaffold_370-1575043694:81119..81639 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_370 | supercontig | scaffold_370:79934..81639 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005739 | mitochondrion |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005739 |
mitochondrion |
| molecular_function |
GO:0003723 |
RNA binding |
Blast
The following BLAST results are available for this feature:
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