TCONS_00062648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062648
Unique NameTCONS_00062648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062648 ID=TCONS_00062648|Name=TCONS_00062648|organism=Clytia hemisphaerica|type=transcript|length=590bp
cgaatgtttaccatatgatttcttctgttattttctgaagttttggaaat
tatgattctaaaaatttctttggctgagcctcaaagtatgcttagcatat
gcttaagttttctggaaatttgagcttcagtatgcttataaacgttatgc
ttataaaacaaaatgagtgtaaCCCATTATTACTGATGCTAATCTTGCTG
TCACGTCCAGCCCATTTAACCTCGATGATATTAGATTGCTTGATTTTTCT
TAAGTAGTAGTTTATACTGTTTGAAGTGTTCTCTCTTAAGCATGATTATC
TCGGTCATGAAATGAGGGTCGAATCTCAATACGAAGACTTTTAGGTTTCT
GAGTATGAATAGAGAACTGATTTTCCTCTGCGATTTAGGTATATCAAGAG
TTTATCCGCATAGAATTTTAAAGGCTTGGTCGCATGGTACATTTACATTT
ACTTCTTGAAGGAAATATATACAATATCTTAAAATTGTaagaattgttga
aattttaGTATATTTAAAGTTGTTAGTATTGAAATTTATTGTACATATTA
TCCTCAACTTCAACAGTACTATAAGAAAATTTATTTGCAC
Run BLAST on NCBI

transcript from alignment at scaffold_370:84820..85409

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062648 ID=TCONS_00062648|Name=TCONS_00062648|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at scaffold_370:84820..85409 (Clytia hemisphaerica)
GTGCAAATAAATTTTCTTATAGTACTGTTGAAGTTGAGGATAATATGTAC
AATAAATTTCAATACTAACAACTTTAAATATACtaaaatttcaacaattc
ttACAATTTTAAGATATTGTATATATTTCCTTCAAGAAGTAAATGTAAAT
GTACCATGCGACCAAGCCTTTAAAATTCTATGCGGATAAACTCTTGATAT
ACCTAAATCGCAGAGGAAAATCAGTTCTCTATTCATACTCAGAAACCTAA
AAGTCTTCGTATTGAGATTCGACCCTCATTTCATGACCGAGATAATCATG
CTTAAGAGAGAACACTTCAAACAGTATAAACTACTACTTAAGAAAAATCA
AGCAATCTAATATCATCGAGGTTAAATGGGCTGGACGTGACAGCAAGATT
AGCATCAGTAATAATGGGttacactcattttgttttataagcataacgtt
tataagcatactgaagctcaaatttccagaaaacttaagcatatgctaag
catactttgaggctcagccaaagaaatttttagaatcataatttccaaaa
cttcagaaaataacagaagaaatcatatggtaaacattcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039260XLOC_039260Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062648-exon-scaffold_370-1491911889:84820..85409TCONS_00062648-exon-scaffold_370-1491911889:84820..85409Clytia hemisphaericaexon
TCONS_00062648-exon-scaffold_370-1510915933:84820..85409TCONS_00062648-exon-scaffold_370-1510915933:84820..85409Clytia hemisphaericaexon
TCONS_00062648-exon-scaffold_370-1575043694:84820..85409TCONS_00062648-exon-scaffold_370-1575043694:84820..85409Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:84820..85409 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.637229	0.599717	0.55333	0.163295	2.29045	1.41452	3.14719	3.69871	0.534156	0.538533	0.561752	1.25857	0.758858	1.49449	0.38018	0.258577	0	1.22399	0.541733	0.569637	2.36098	1.83524	0.506612	0.861875	1.38516	2.11043	0.196184	0.901404	0.690086	1.58396
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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