TCONS_00062660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062660
Unique NameTCONS_00062660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062660 ID=TCONS_00062660|Name=TCONS_00062660|organism=Clytia hemisphaerica|type=transcript|length=546bp
GACTTTAATTTGCCAGACATCAACTGGGATTCAAAAGAAATTGCTACAAA
TCACTACTCAAAAGagacaaatgaaaattttttaaatctctttgataCGT
TAAACCTTACCCAACACGTAAACTTCACCACACGTAAAAAATCAGTACTT
GATCTCTTCCTAACCAACCGTCCAGGTTTGATAGAACGTTGTGAACCGCT
ACCCGGCTTTGGAGATCACGATACAGCAGTTATATCAGATATTTTATGTC
ACCCTACCAAAATTAAACCTATTCAAcgcaaaatatatatttggaaGAGG
GCAAACTTAACAGCTTTAAAAGACCAAGTACAGAATAAGATAAACAGACT
TATTGAAATTGAATCAACCGCAACATCAATAAACACTTTATGGTTTCAAT
TCAAAGACATTCTTCAGACAGCTCAAGATGCACATGTTCCAACAAAAATG
ACATCTTCAAGATACACCCAACCTTGGTTCAATAGAGATTGTAAACGTGC
TACCCGAAAGAAAAAAAGACGTTACCGAGTATACAAACGTACAAAA
Run BLAST on NCBI

protein sequence of TCONS_00062660-protein

>TCONS_00062660-protein ID=TCONS_00062660-protein|Name=TCONS_00062660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
DFNLPDINWDSKEIATNHYSKETNENFLNLFDTLNLTQHVNFTTRKKSVL
DLFLTNRPGLIERCEPLPGFGDHDTAVISDILCHPTKIKPIQRKIYIWKR
ANLTALKDQVQNKINRLIEIESTATSINTLWFQFKDILQTAQDAHVPTKM
TSSRYTQPWFNRDCKRATRKKKRRYRVYKRTK
Run BLAST on NCBI

transcript from alignment at scaffold_370:305587..306132

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062660 ID=TCONS_00062660|Name=TCONS_00062660|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at scaffold_370:305587..306132 (Clytia hemisphaerica)
TTTTGTACGTTTGTATACTCGGTAACGTCTTTTTTTCTTTCGGGTAGCAC
GTTTACAATCTCTATTGAACCAAGGTTGGGTGTATCTTGAAGATGTCATT
TTTGTTGGAACATGTGCATCTTGAGCTGTCTGAAGAATGTCTTTGAATTG
AAACCATAAAGTGTTTATTGATGTTGCGGTTGATTCAATTTCAATAAGTC
TGTTTATCTTATTCTGTACTTGGTCTTTTAAAGCTGTTAAGTTTGCCCTC
ttccaaatatatattttgcgTTGAATAGGTTTAATTTTGGTAGGGTGACA
TAAAATATCTGATATAACTGCTGTATCGTGATCTCCAAAGCCGGGTAGCG
GTTCACAACGTTCTATCAAACCTGGACGGTTGGTTAGGAAGAGATCAAGT
ACTGATTTTTTACGTGTGGTGAAGTTTACGTGTTGGGTAAGGTTTAACGt
atcaaagagatttaaaaaattttcatttgtctCTTTTGAGTAGTGATTTG
TAGCAATTTCTTTTGAATCCCAGTTGATGTCTGGCAAATTAAAGTC

Coding sequence (CDS) from alignment at scaffold_370:305587..306132

>TCONS_00062660 ID=TCONS_00062660|Name=TCONS_00062660|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_370:305587..306132 (Clytia hemisphaerica)
TTTTGTACGTTTGTATACTCGGTAACGTCTTTTTTTCTTTCGGGTAGCAC
GTTTACAATCTCTATTGAACCAAGGTTGGGTGTATCTTGAAGATGTCATT
TTTGTTGGAACATGTGCATCTTGAGCTGTCTGAAGAATGTCTTTGAATTG
AAACCATAAAGTGTTTATTGATGTTGCGGTTGATTCAATTTCAATAAGTC
TGTTTATCTTATTCTGTACTTGGTCTTTTAAAGCTGTTAAGTTTGCCCTC
ttccaaatatatattttgcgTTGAATAGGTTTAATTTTGGTAGGGTGACA
TAAAATATCTGATATAACTGCTGTATCGTGATCTCCAAAGCCGGGTAGCG
GTTCACAACGTTCTATCAAACCTGGACGGTTGGTTAGGAAGAGATCAAGT
ACTGATTTTTTACGTGTGGTGAAGTTTACGTGTTGGGTAAGGTTTAACGt
atcaaagagatttaaaaaattttcatttgtctCTTTTGAGTAGTGATTTG
TAGCAATTTCTTTTGAATCCCAGTTGATGTCTGGCAAATTAAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039272XLOC_039272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062660-exon-scaffold_370-1491911889:305587..306132TCONS_00062660-exon-scaffold_370-1491911889:305587..306132Clytia hemisphaericaexon
TCONS_00062660-exon-scaffold_370-1510915933:305587..306132TCONS_00062660-exon-scaffold_370-1510915933:305587..306132Clytia hemisphaericaexon
TCONS_00062660-exon-scaffold_370-1575043694:305587..306132TCONS_00062660-exon-scaffold_370-1575043694:305587..306132Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062660-proteinTCONS_00062660-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:305587..306132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75656	0.988576	1.00064	0.832868	1.79808	1.9105	1.48655	1.30788	0.533562	1.0573	1.05911	0.556374	1.75572	0.471001	0.67221	0.359606	1.26891	1.00416	1.04977	0.698285	1.18267	0.695869	0	0.753346	0	0.845167	0.18195	0.169829	1.13499	0.661398
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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